mRNA_P-wetherbeei_contig696.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig696.1.1
Unique NamemRNA_P-wetherbeei_contig696.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig696.1.1 vs. uniprot
Match: D7G491_ECTSI (Similar to Dynein heavy chain 3, axonemal (Axonemal beta dynein heavy chain 3) (Ciliary dynein heavy chain 3), partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G491_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 8.850e-41
Identity = 89/217 (41.01%), Postives = 133/217 (61.29%), Query Frame = 1 
Query:   16 DMGGRPRDCNERTRHVAAEVAALRKQAEAVAQEEQKLEGTSHGKQLAMVAELEEVLRPVADLWGAAVAVAKNLASWTRTPVTALDGAAVRVEHTKLRETLMGLLQGLRVAKRDAPAKAAQEALLQLESFEKDIPVVLALSSPEFRAQHWRQVSALAGVTLSREHPTTLQQLNELGALTDTKATNIVKIGAEATEEAALLRQLRPVELFVRDEAVLRL 666
            D   RPR+ +E    ++ E+A L+ QA  + +EE K++G + G  +A+  ++    +P ADLW    +V   + +  R PVT L+   +  EH  +++ L  L++ +       P KAAQE+L  L + EKDIP++ AL++P  + +HW Q+SALAGVT+S EHPTTLQQLNEL  LTDTKA  I+++  +A  E AL      V+ FV +EAVLR+
Sbjct: 1524 DSDARPREMSENAASISKELAGLKAQAVDIGEEEAKVDGHTSGTLVALAEKVIVSFQPYADLWSLVGSVGPFITTIMRAPVTTLNPEEITAEHASIKQRLEALIKIMEAKSHANPTKAAQESLRLLAALEKDIPILKALTNPHLKDRHWWQISALAGVTVSVEHPTTLQQLNELDVLTDTKADAILRLSDDADAEHALETSTAEVDRFVSEEAVLRI 1740
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BLAST of mRNA_P-wetherbeei_contig696.1.1 vs. uniprot
Match: A0A6H5L524_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L524_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.440e-32
Identity = 87/257 (33.85%), Postives = 134/257 (52.14%), Query Frame = 1 
Query:   16 DMGGRPRDCNERTRHVAAEVAALRKQAEAVAQEEQKLEGTSHGKQLAMVAELEEVLRPVADLWGAAVAVAKNLASWTRTPVTALDGAAVRVEHTKLRET-----------------------------LMGLLQGLRVAKRDAPAKAAQEALLQLESFEKDIPVVLALSSPEFRAQHWRQVSALAGVTLSREHPTTLQQLNELGALTDTKATNIV-----------KIGAEATEEAALLRQLRPVELFVRDEAVLRL 666
            D   RPR+ +E    ++ E+A L+ QA  + +EE K++G + G  +A+  ++    +P AD+W    +V   + +  R PVT L+   +  EH  +++                              L  L++ +    +  P KAAQE+L  L + EKDIP++ AL++P  + +HW Q+SALAGVT+S EHPTTLQQLNEL  LTD KA  I+            + ++A  E AL +    V+ FV +EAVLR+
Sbjct: 1711 DSDARPREMSETAASISKELAGLKAQAVDIGEEEAKVDGHTSGALVALAEKVIVSFQPYADIWSLVGSVGPFITTVMRAPVTTLNPEEITAEHASIKQRWSKFSFLANTSPVKCVLFLLSNCSDPSFRLEALIKIMEARSQATPTKAAQESLRLLAALEKDIPIIKALTNPRLKDRHWWQISALAGVTVSVEHPTTLQQLNELDVLTDIKADAILLTSTKQLIIFNMLNSDADAEHALEKSTAEVDRFVSEEAVLRI 1967
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BLAST of mRNA_P-wetherbeei_contig696.1.1 vs. uniprot
Match: A0A7S4SC59_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SC59_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-6
Identity = 42/154 (27.27%), Postives = 74/154 (48.05%), Query Frame = 1 
Query:  160 VAELEEVLRPVADLWGAAVAVAKNLASWTRTPVT-------ALDGAAVRVEHTKLRETLMGLLQGLRVAKRDAPAKAAQEALLQLESFEKDIPVVLALSSPEFRAQHWRQVSALAGVTLSREHPTTLQQLNELGALTDTKATNIVKIGAEATEE 600
            +AE+   L+P   LW       +  A WT++P+        A D         +  + L   L+G   A+   P +  Q   L LE     +P++ A+++P+   +HWR++ A+ G  L R+H  TLQ+L ++     + A +I++I   AT+E
Sbjct: 1159 LAEVHAALQPFKSLWILVREYQQAHALWTKSPLVCSQLPFRAEDVQEEAAAMHRRAKALQARLEGEGAAR---PGRVVQRLSLDLELLRDSLPLLRAVANPDLGERHWREIYAVLGFVLERDHALTLQRLLDMDI--GSYAMDIIEISEGATKE 1307
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig696.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G491_ECTSI8.850e-4141.01Similar to Dynein heavy chain 3, axonemal (Axonema... [more]
A0A6H5L524_9PHAE2.440e-3233.85DHC_N2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S4SC59_9DINO1.260e-627.27Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig696contigP-wetherbeei_contig696:576..2263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G491
Preferred nameDNAH12
PFAMsDHC_N1
Model size666
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons6
Evalue4.05e-41
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Ec32 ortholog descriptionDynein heavy chain
Ec32 orthologEc-02_001770.1
Descriptiondynein light chain binding
Cds size648
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig696.1.1prot_P-wetherbeei_contig696.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig696 576..2245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.2913072-CDS-P-wetherbeei_contig696:575..6651683186948.2913072-CDS-P-wetherbeei_contig696:575..665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig696 576..665 -
1683186948.3010206-CDS-P-wetherbeei_contig696:909..10171683186948.3010206-CDS-P-wetherbeei_contig696:909..1017Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig696 910..1017 -
1683186948.3127782-CDS-P-wetherbeei_contig696:1207..13001683186948.3127782-CDS-P-wetherbeei_contig696:1207..1300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig696 1208..1300 -
1683186948.3268523-CDS-P-wetherbeei_contig696:1438..15651683186948.3268523-CDS-P-wetherbeei_contig696:1438..1565Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig696 1439..1565 -
1683186948.3436863-CDS-P-wetherbeei_contig696:1813..19501683186948.3436863-CDS-P-wetherbeei_contig696:1813..1950Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig696 1814..1950 -
1683186948.3539026-CDS-P-wetherbeei_contig696:2152..22451683186948.3539026-CDS-P-wetherbeei_contig696:2152..2245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig696 2153..2245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.363705-UTR-P-wetherbeei_contig696:2245..22631683186948.363705-UTR-P-wetherbeei_contig696:2245..2263Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig696 2246..2263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig696.1.1

>prot_P-wetherbeei_contig696.1.1 ID=prot_P-wetherbeei_contig696.1.1|Name=mRNA_P-wetherbeei_contig696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
MGGRPRDCNERTRHVAAEVAALRKQAEAVAQEEQKLEGTSHGKQLAMVAE
LEEVLRPVADLWGAAVAVAKNLASWTRTPVTALDGAAVRVEHTKLRETLM
GLLQGLRVAKRDAPAKAAQEALLQLESFEKDIPVVLALSSPEFRAQHWRQ
VSALAGVTLSREHPTTLQQLNELGALTDTKATNIVKIGAEATEEAALLRQ
LRPVELFVRDEAVLRL
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mRNA from alignment at P-wetherbeei_contig696:576..2263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig696.1.1 ID=mRNA_P-wetherbeei_contig696.1.1|Name=mRNA_P-wetherbeei_contig696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1688bp|location=Sequence derived from alignment at P-wetherbeei_contig696:576..2263- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGTCGCTGCGGGACATGGGAGGCCGCCCGCGGGACTGCAACGAGCG
AACGCGGCATGTTGCCGCCGAGGTAGCGGCGCTGCGGAAGCAAGCCGAGG
CCGTGGCGCAGGTGAGTAAAAGGAAGATAGAGGGGCTCTTCGCGGACAGT
ATAGTATGCCCAAAATGCTCCTTCTGTGTTAGCCGGGTAGCCCCTATTGC
GAGCTTTTTCAGCCGACTGATGACCGAGTGGGGAAATTTGTTTGTGCCCA
CTTCGCTGTTTGTTGTTTCGCCTCCCGGCGCCTTGCCTGCGCCCCGCCGC
CCCGTCGTTACAGGAGGAGCAAAAACTAGAGGGCACGAGCCACGGCAAAC
AGCTGGCCATGGTGGCGGAGCTGGAGGAAGTTCTGCGCCCCGTCGCCGAC
CTCTGGGGCGCCGCCGTCGCCGTCGCCAAGAACCTCGCGTCGTGGACGAG
GTCAGTATTCGCTCCGCGGCCGCCACCGCTGCTCCCGCCGTTCTGCCGCC
GCCGCTTCCATCAGCGTAGCCGCTTTGGCTGCCGCCGCTTCCCCTACGGC
CGCTCCCGCCGTTTTCTTCTTCGATACGCCGCGCCACCAATGGAATCTGA
AACCCTCATAGCTCAGTTCCTTTGCTTTTTCTGAAAGTGTCCTTGTGACA
TGGCGCTGAGTCCGTCTCCATCTATTTTTTCTTCCCTTGCGGCGACAGGA
CTCCGGTGACGGCTCTGGACGGCGCGGCGGTGCGGGTGGAGCACACAAAG
CTACGTGAGACGCTGATGGGACTACTGCAAGGCCTGCGAGTAGCAAAACG
AGACGCCCCGGCTAAGGCTGCTCAGGTGCACTTTAGACTGTTCGTGTGGC
TTGGCATTGCGCAGGCGGTCGGTTGCTGTCGCGCAGCACTTTTTGCTGAC
TCACCACCACCTTTGCTGCCGCCGCCGCTGTTTGCCACCGCTGCGTTTGG
TGCACACATGTAGGAAGCACTTTTGCAGTTGGAGAGTTTCGAGAAGGACA
TCCCGGTGGTTCTGGCGCTATCCAGCCCGGAGTTCCGAGCGCAGCACTGG
CGGCAGGTAAGATGCACTGTTCCGTTCTGTCACTTTCTGACCATGTACTA
CCAACTACAGGAAGACTGTATGTTTCAATCCAGCAAAGAAGCCACCATTA
CACGACGAGGCGCGCGTGGTTCTAGCGGCAGCACTTAACGCCGCTGCTTT
GCTATGCCGCTCACCGCTTCCGCCGCCGCTGGCACTGCGAACACAGGTGT
CGGCGCTGGCGGGCGTGACGCTATCCCGCGAGCATCCGACGACGCTGCAG
CAGCTTAACGAGCTCGGCGCCCTCACAGACACCAAGGCCACGAACATCGT
CAAGGTGCGGAAACGGCATAAGGAATGCCGGTGTTTATGCTGGCTTGAAA
GGGTTGGCAGACAGCCAGGCTGACCATAATTTGCGTCAAGCTGCGGCGGC
ATCCCTGATATATTTGCCTCTCGCTTCTAGTGGCGGCTGCCGCAAGGCCA
GCCAGCCGTTAGTCTACGCCAAACTGCTGGCTTCAGCCCTCGGGGATCCT
AAGGAACGTGCCTTCTTTCCCACCGTATTTTTGATTGTCTGCTGCCAGAT
CGGCGCCGAGGCCACCGAGGAGGCAGCGCTGCTGCGCCAGCTGCGACCGG
TCGAGCTCTTCGTCCGCGACGAGGCCGTGCTGCGGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig696:576..2263-

>mRNA_P-wetherbeei_contig696.1.1 ID=mRNA_P-wetherbeei_contig696.1.1|Name=mRNA_P-wetherbeei_contig696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig696:576..2263- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGGCCGCCCGCGGGACTGCAACGAGCGAACGCGGCATGTTGCCGC
CGAGGTAGCGGCGCTGCGGAAGCAAGCCGAGGCCGTGGCGCAGGAGGAGC
AAAAACTAGAGGGCACGAGCCACGGCAAACAGCTGGCCATGGTGGCGGAG
CTGGAGGAAGTTCTGCGCCCCGTCGCCGACCTCTGGGGCGCCGCCGTCGC
CGTCGCCAAGAACCTCGCGTCGTGGACGAGGACTCCGGTGACGGCTCTGG
ACGGCGCGGCGGTGCGGGTGGAGCACACAAAGCTACGTGAGACGCTGATG
GGACTACTGCAAGGCCTGCGAGTAGCAAAACGAGACGCCCCGGCTAAGGC
TGCTCAGGAAGCACTTTTGCAGTTGGAGAGTTTCGAGAAGGACATCCCGG
TGGTTCTGGCGCTATCCAGCCCGGAGTTCCGAGCGCAGCACTGGCGGCAG
GTGTCGGCGCTGGCGGGCGTGACGCTATCCCGCGAGCATCCGACGACGCT
GCAGCAGCTTAACGAGCTCGGCGCCCTCACAGACACCAAGGCCACGAACA
TCGTCAAGATCGGCGCCGAGGCCACCGAGGAGGCAGCGCTGCTGCGCCAG
CTGCGACCGGTCGAGCTCTTCGTCCGCGACGAGGCCGTGCTGCGGCTC
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