mRNA_P-wetherbeei_contig10219.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10219.1.1
Unique NamemRNA_P-wetherbeei_contig10219.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10219.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10219contigP-wetherbeei_contig10219:437..1819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1111
Hectar predicted targeting categoryother localisation
Exons2
Cds size669
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.6113074-UTR-P-wetherbeei_contig10219:436..5851683185859.6113074-UTR-P-wetherbeei_contig10219:436..585Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10219 437..585 -
1683185859.6415305-UTR-P-wetherbeei_contig10219:1526..18191683185859.6415305-UTR-P-wetherbeei_contig10219:1526..1819Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10219 1527..1819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.6202574-CDS-P-wetherbeei_contig10219:585..9541683185859.6202574-CDS-P-wetherbeei_contig10219:585..954Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10219 586..954 -
1683185859.6309316-CDS-P-wetherbeei_contig10219:1226..15261683185859.6309316-CDS-P-wetherbeei_contig10219:1226..1526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10219 1227..1526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10219.1.1prot_P-wetherbeei_contig10219.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10219 586..1526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10219.1.1

>prot_P-wetherbeei_contig10219.1.1 ID=prot_P-wetherbeei_contig10219.1.1|Name=mRNA_P-wetherbeei_contig10219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
MKRSRLWREEDIQSSRRARELRRCPEETKANSAAIAAMLESQVHANKSVK
STQLQASLKAAGFEADRRHVNNAKLRVKKDMALGEDDSCQLMEPFLKAFE
EKNSGSVISLQKDEKGRLKRRCLIMPNACAIAAYRTPKQLLMIEGRLNGS
AQPSVLCCKVAYQRLIAPEWTRYAGGTWQERGMCVGKNGKRYVLSIHIID
SRKRSGIPPPLQWNRYRILKSL*
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mRNA from alignment at P-wetherbeei_contig10219:437..1819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10219.1.1 ID=mRNA_P-wetherbeei_contig10219.1.1|Name=mRNA_P-wetherbeei_contig10219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1383bp|location=Sequence derived from alignment at P-wetherbeei_contig10219:437..1819- (Phaeothamnion wetherbeei SAG_119_79)
AGGAAGAGGTATAGTCTGGGATCTTATCCCAAAAAGTCGCCTTAAACCAT
AAAATTGCTGAAATATGATCTCCATTGTGGCAGCAGAGTCTGCAGCCAGA
CGCGCAAGGGGAGGCTATATTAAACGTAGGGCAGCGTTTTAAGATCTCAG
AGGATATATGCGCCACCATGTTGAGGACTATTTCCTCGCTGGAAGGCACA
GGCTGACCTCAATCTCTTCGGCTGGGCGGCAGAAGAAGTACGGGTGTACA
AGGTCCAACATCAAGGACAGAACTGGCTACACCTTTCGTGCATATGAAAC
GAAGCAGGCTATGGCGAGAGGAAGATATCCAAAGTAGTAGACGAGCACGA
GAACTGCGCCGCTGTCCCGAAGAAACGAAGGCGAATTCAGCGGCGATCGC
GGCGATGCTGGAGTCGCAGGTGCACGCCAACAAGAGCGTGAAGTCCACGC
AGCTCCAGGCATCGCTCAAGGCAGCCGGGTTTGAGGCAGACCGGCGCCAC
GTCAACAACGCGAAGCTGCGCGTGAAGAAGGACATGGCCCTGGGCGAGGA
TGACTCATGCCAGCTCATGGAGCCGTTCTTGAAGGCATTCGAGGTTAGTT
GCGACCCTTTTGTCTCTTTGCACCGGAGACGCCGCATTTGCTATCTCCGT
TTTCACGAGTGGAGGTTTTCAAGCACTGCTGCGACTACCGCATCGTTATT
ACTGTCGAGGTAGTGTCTTATCGTATTTACCCTTCCTTGCAATTGTAACT
TGTTTCAGTTTTCGAAATTTTGAATATTTGAATATCTGCCGCCAATTCTC
ATTTAAACTCCGCCTTCTTTTGCGGATTCTGCCGGAATTAATGCCACTCC
CCCCGCATTTATCAGGAGAAGAACTCTGGAAGCGTTATTTCGCTGCAGAA
GGATGAGAAGGGGCGCTTAAAGCGGCGGTGTCTCATCATGCCGAATGCCT
GTGCCATCGCCGCCTACAGGACGCCAAAGCAGCTCCTGATGATAGAGGGA
AGGCTAAATGGAAGTGCACAGCCTTCAGTATTGTGCTGCAAAGTTGCCTA
TCAACGTCTAATAGCCCCGGAATGGACAAGGTATGCGGGTGGCACGTGGC
AAGAAAGAGGTATGTGCGTGGGAAAGAATGGAAAGAGGTACGTATTATCG
ATACATATCATCGATAGTAGAAAGAGGTCCGGTATACCACCCCCCTTACA
GTGGAATAGGTACAGAATACTGAAATCGCTTTAAAGCCGCCCACGTCAAT
ACCTCTTCTGTTCCAGTTCAGGGAGGTATACCTTTTTATTCCAATCCCAT
GTAGCCTCCGAAAAAAGATGCGGGATGGAGGGGAGGCCGGCTTTTCTATC
ATTATTCGGCAGAACTCTCTTGCGTTTGGGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10219:437..1819-

>mRNA_P-wetherbeei_contig10219.1.1 ID=mRNA_P-wetherbeei_contig10219.1.1|Name=mRNA_P-wetherbeei_contig10219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig10219:437..1819- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGAAGCAGGCTATGGCGAGAGGAAGATATCCAAAGTAGTAGACG
AGCACGAGAACTGCGCCGCTGTCCCGAAGAAACGAAGGCGAATTCAGCGG
CGATCGCGGCGATGCTGGAGTCGCAGGTGCACGCCAACAAGAGCGTGAAG
TCCACGCAGCTCCAGGCATCGCTCAAGGCAGCCGGGTTTGAGGCAGACCG
GCGCCACGTCAACAACGCGAAGCTGCGCGTGAAGAAGGACATGGCCCTGG
GCGAGGATGACTCATGCCAGCTCATGGAGCCGTTCTTGAAGGCATTCGAG
GAGAAGAACTCTGGAAGCGTTATTTCGCTGCAGAAGGATGAGAAGGGGCG
CTTAAAGCGGCGGTGTCTCATCATGCCGAATGCCTGTGCCATCGCCGCCT
ACAGGACGCCAAAGCAGCTCCTGATGATAGAGGGAAGGCTAAATGGAAGT
GCACAGCCTTCAGTATTGTGCTGCAAAGTTGCCTATCAACGTCTAATAGC
CCCGGAATGGACAAGGTATGCGGGTGGCACGTGGCAAGAAAGAGGTATGT
GCGTGGGAAAGAATGGAAAGAGGTACGTATTATCGATACATATCATCGAT
AGTAGAAAGAGGTCCGGTATACCACCCCCCTTACAGTGGAATAGGTACAG
AATACTGAAATCGCTTTAA
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