mRNA_P-wetherbeei_contig6886.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6886.2.1
Unique NamemRNA_P-wetherbeei_contig6886.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6886.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6886contigP-wetherbeei_contig6886:1600..3268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1290
Hectar predicted targeting categoryother localisation
Exons2
Cds size933
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186943.4917548-UTR-P-wetherbeei_contig6886:1599..18951683186943.4917548-UTR-P-wetherbeei_contig6886:1599..1895Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6886 1600..1895 -
1683186943.523797-UTR-P-wetherbeei_contig6886:3207..32681683186943.523797-UTR-P-wetherbeei_contig6886:3207..3268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6886 3208..3268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186943.5029223-CDS-P-wetherbeei_contig6886:1895..26391683186943.5029223-CDS-P-wetherbeei_contig6886:1895..2639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6886 1896..2639 -
1683186943.5139115-CDS-P-wetherbeei_contig6886:3018..32071683186943.5139115-CDS-P-wetherbeei_contig6886:3018..3207Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6886 3019..3207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6886.2.1prot_P-wetherbeei_contig6886.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6886 1896..3207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6886.2.1

>prot_P-wetherbeei_contig6886.2.1 ID=prot_P-wetherbeei_contig6886.2.1|Name=mRNA_P-wetherbeei_contig6886.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=311bp
MVAAPPEPAAMARRKPIVSKANGRSGVNQSFNHPSFERGQQKTPPQASAG
AVADRWVPTNVHPAPKPSTSPILALLGAAAVIEGCRTPRPDSPLPLAPAQ
RSAKRERAETPQLPPPPLSPLERRALEDIESPLPSLSALLGHVSQSHGTS
SGSSPASSPGGGGVDGGDHAPTFIRTPPRRGPSFERVARPAVRAVALAPP
PPTLRVGPSGPPVPPPPPKQQQEQQQRQPQRQHQQQQQRRRPELTEQPQH
RQRPIQMSACGPISPTDTVTATVTVTRRHPQYHGFYSPPAAYGGPNPWLY
APWAPHVQSY*
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mRNA from alignment at P-wetherbeei_contig6886:1600..3268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6886.2.1 ID=mRNA_P-wetherbeei_contig6886.2.1|Name=mRNA_P-wetherbeei_contig6886.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1669bp|location=Sequence derived from alignment at P-wetherbeei_contig6886:1600..3268- (Phaeothamnion wetherbeei SAG_119_79)
AAGGGCAAAGAGGAAAGGAAGCTGAAAGAAGCGAAAGCCAAACACAAAAC
ACCTTCGCAACATGGTTGCCGCCCCACCCGAGCCGGCAGCGATGGCGAGA
CGCAAGCCCATAGTTTCGAAGGCGAACGGCCGCAGCGGGGTCAACCAGAG
CTTTAACCATCCGTCATTTGAAAGAGGACAACAAAAGACCCCTCCGCAAG
CTAGTGCCGGCGCGGTTGCTGATCGCTGGGTTCCGACCAATGTCCATCCC
GTGAGCATCTTCTCCGTTTGGTTGCTCTGTCGACGACCCGACATTGGCTT
TTTCAGGAACCCGGGACCTTGTTGCCCTGCCCGTTCGTTGCCAGGCATGA
CGGCTTTTTAAGACGTCTCTCTTTGCAACGGCTGCAAAACAAGGGGCTTT
CCAAGGGGTCCAATTTTCCCTTCCCGTTTGATGTTGCTCGTTGCTAATGA
TCACCCTTGCCCGAGCCAAGGCATGAGAGCGAGGAGAAACGGAGGGAAGC
TTGAGGCAAGAGGCTGTAAAGAAGGACGTTCTGTCACTTCGCTCTGTCCT
TCCCTCTCATGGCGCCACAAATGCTGACATTTGCCCACGCTGCCGACGTG
TCCCCGCCCCTACATCCCCACTTCCGCAGGCGCCGAAACCATCCACTTCG
CCGATCCTGGCCCTGCTGGGCGCAGCGGCCGTGATCGAAGGCTGCCGCAC
CCCACGTCCGGACTCGCCACTGCCGTTGGCCCCTGCCCAACGAAGCGCGA
AGCGAGAAAGGGCGGAGACGCCGCAACTACCGCCGCCGCCGCTGTCGCCA
CTCGAGCGGCGCGCCCTTGAGGACATAGAAAGCCCGTTGCCGTCTCTTAG
CGCACTTCTTGGCCACGTCAGCCAAAGCCACGGTACGAGCAGCGGTTCGA
GCCCTGCCAGCAGCCCCGGCGGCGGCGGTGTCGATGGCGGCGATCACGCT
CCGACGTTCATCCGGACGCCGCCGAGGCGTGGCCCAAGCTTTGAGCGGGT
TGCAAGGCCCGCTGTGCGAGCAGTGGCGCTGGCGCCGCCCCCACCGACCC
TTCGGGTTGGGCCATCTGGGCCGCCGGTGCCGCCGCCGCCGCCGAAGCAG
CAGCAGGAGCAGCAGCAACGACAGCCGCAGCGGCAGCACCAGCAGCAGCA
GCAGCGGCGGCGGCCGGAGCTGACCGAGCAGCCGCAGCACCGGCAGCGCC
CGATCCAAATGTCAGCCTGCGGACCCATCTCCCCGACGGACACCGTAACC
GCCACCGTGACGGTTACACGGCGCCACCCGCAGTACCACGGCTTCTACTC
GCCGCCGGCGGCGTACGGCGGGCCGAATCCATGGCTTTATGCGCCGTGGG
CGCCTCACGTGCAGAGCTACTAGTGTTGGAAGCCGTGCACGGCGGCGCCG
GCGTCGGCACGGCCGCCGACGCGGCGCCGGGAGCGGGTTGAACAAAAGAA
CATACATGGCGAGCCACGCCGCGCTGCTCCGGCCGCCGCACTGCCGTATC
TGGGTATGGTTGATGAGGCTGCCATCGCCTCCGTATAATCCCTGTCCGGC
TTCCTTGCTAACCGGCACGGACAAAGGGTAGTATTGCAAAGCTTTCACAT
CAGATTTCCAAGGCGATAGAACGGTCTAGAATGCGGGCAATGTAAATGGA
AGGAAAGCTGCAGACTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6886:1600..3268-

>mRNA_P-wetherbeei_contig6886.2.1 ID=mRNA_P-wetherbeei_contig6886.2.1|Name=mRNA_P-wetherbeei_contig6886.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=933bp|location=Sequence derived from alignment at P-wetherbeei_contig6886:1600..3268- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGCCGCCCCACCCGAGCCGGCAGCGATGGCGAGACGCAAGCCCAT
AGTTTCGAAGGCGAACGGCCGCAGCGGGGTCAACCAGAGCTTTAACCATC
CGTCATTTGAAAGAGGACAACAAAAGACCCCTCCGCAAGCTAGTGCCGGC
GCGGTTGCTGATCGCTGGGTTCCGACCAATGTCCATCCCGCGCCGAAACC
ATCCACTTCGCCGATCCTGGCCCTGCTGGGCGCAGCGGCCGTGATCGAAG
GCTGCCGCACCCCACGTCCGGACTCGCCACTGCCGTTGGCCCCTGCCCAA
CGAAGCGCGAAGCGAGAAAGGGCGGAGACGCCGCAACTACCGCCGCCGCC
GCTGTCGCCACTCGAGCGGCGCGCCCTTGAGGACATAGAAAGCCCGTTGC
CGTCTCTTAGCGCACTTCTTGGCCACGTCAGCCAAAGCCACGGTACGAGC
AGCGGTTCGAGCCCTGCCAGCAGCCCCGGCGGCGGCGGTGTCGATGGCGG
CGATCACGCTCCGACGTTCATCCGGACGCCGCCGAGGCGTGGCCCAAGCT
TTGAGCGGGTTGCAAGGCCCGCTGTGCGAGCAGTGGCGCTGGCGCCGCCC
CCACCGACCCTTCGGGTTGGGCCATCTGGGCCGCCGGTGCCGCCGCCGCC
GCCGAAGCAGCAGCAGGAGCAGCAGCAACGACAGCCGCAGCGGCAGCACC
AGCAGCAGCAGCAGCGGCGGCGGCCGGAGCTGACCGAGCAGCCGCAGCAC
CGGCAGCGCCCGATCCAAATGTCAGCCTGCGGACCCATCTCCCCGACGGA
CACCGTAACCGCCACCGTGACGGTTACACGGCGCCACCCGCAGTACCACG
GCTTCTACTCGCCGCCGGCGGCGTACGGCGGGCCGAATCCATGGCTTTAT
GCGCCGTGGGCGCCTCACGTGCAGAGCTACTAG
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