mRNA_P-wetherbeei_contig684.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig684.1.1
Unique NamemRNA_P-wetherbeei_contig684.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A482SLQ3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLQ3_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 9.840e-11
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 MATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            M  I++E+KATAKEFN RGDL AG +I AF +VA+VML HG+V
Sbjct:    1 MTDIYQEIKATAKEFNARGDLIAGTNIAAFLRVANVMLVHGSV 43
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A836CHL3_9STRA (Glutamate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.560e-10
Identity = 33/43 (76.74%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 MATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            MA IF +V  TAKEFNTRGDL AGA I  F KVADVMLAHGAV
Sbjct:  442 MARIFADVNNTAKEFNTRGDLHAGAVISGFVKVADVMLAHGAV 484
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: D8LK56_ECTSI (Glutamate dehydrogenase 1 (NADP-dependent) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK56_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.280e-9
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 MATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            M  IF +VKATA EFN RGD  AGA+I  F KVADVMLAHGAV
Sbjct:  485 MKDIFADVKATATEFNARGDYGAGATISGFMKVADVMLAHGAV 527
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A6U5GFP7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GFP7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.110e-8
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 MATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            +A ++KE+K+TA+EFNTRGDL AGA+I  F +VA+ M +HGAV
Sbjct:  219 IARVYKEIKSTAREFNTRGDLHAGATIAGFIRVANQMTSHGAV 261
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A7S3PXE2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXE2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 MATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            +A I+K+ K TA+EFN RGDL  GA+I  F +VA+ MLAHGAV
Sbjct:  476 IARIYKDTKNTAQEFNARGDLYVGANISGFLRVANAMLAHGAV 518
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A7S3ZJ22_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJ22_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.370e-7
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    4 ATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            A +F+EV+ TA E+N RGDL AGA+I +F +VA+VM +HG+V
Sbjct:  464 ARVFQEVQRTASEYNVRGDLDAGAAIASFLRVANVMASHGSV 505
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A4D9CY97_9STRA (Glutamate dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY97_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.720e-7
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 TIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            +I+ E KATAKEFN RGD+ AGA +  F +VAD ++ HGAV
Sbjct:  474 SIYLEAKATAKEFNVRGDMHAGAIMAGFLRVADTIICHGAV 514
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A7S2LN49_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LN49_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   10 IFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            I+ +VK+ A EFN RGDL AG S+  F +VAD MLAHGA+
Sbjct:  343 IYNDVKSAATEFNARGDLFAGGSMVGFLRVADAMLAHGAI 382
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A7S2WPC4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WPC4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 MATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            +A I+ EVK T++EFN RGDL  GA+I  F +VA+ M++HG V
Sbjct:  344 VARIYNEVKRTSQEFNARGDLNTGANIAGFLRVANAMMSHGVV 386
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BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Match: A0A6V1RCQ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RCQ3_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 3.050e-6
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 MATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV 129
            MA     VK TA+EFN RGDL AGASI AF KVAD ML  G+V
Sbjct:  478 MARTHALVKDTAQEFNLRGDLNAGASIAAFLKVADAMLLQGSV 520
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig684.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A482SLQ3_9ARCH9.840e-1165.12Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A836CHL3_9STRA2.560e-1076.74Glutamate dehydrogenase n=1 Tax=Tribonema minus Ta... [more]
D8LK56_ECTSI2.280e-972.09Glutamate dehydrogenase 1 (NADP-dependent) n=2 Tax... [more]
A0A6U5GFP7_9STRA1.110e-860.47Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3PXE2_9STRA2.490e-760.47Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3ZJ22_9STRA6.370e-757.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CY97_9STRA8.720e-758.54Glutamate dehydrogenase n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2LN49_9STRA2.230e-660.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2WPC4_9STRA2.230e-653.49Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6V1RCQ3_HETAK3.050e-665.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig684contigP-wetherbeei_contig684:298..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK56
PFAMsELFV_dehydrog,ELFV_dehydrog_N
Model size132
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC02799
KEGG koko:K00262
KEGG ReactionR00248
KEGG Pathwayko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue3.74e-10
EggNOG OGsCOG0334@1|root,KOG2250@2759|Eukaryota
EC1.4.1.4
Descriptionglutamate dehydrogenase [NAD(P) ] activity
Cds size132
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.0765963-CDS-P-wetherbeei_contig684:297..3931683186941.0765963-CDS-P-wetherbeei_contig684:297..393Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig684 298..393 +
1683186941.0895493-CDS-P-wetherbeei_contig684:650..6861683186941.0895493-CDS-P-wetherbeei_contig684:650..686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig684 651..686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig684.1.1prot_P-wetherbeei_contig684.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig684 298..686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig684.1.1

>prot_P-wetherbeei_contig684.1.1 ID=prot_P-wetherbeei_contig684.1.1|Name=mRNA_P-wetherbeei_contig684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
MATIFKEVKATAKEFNTRGDLQAGASICAFRKVADVMLAHGAV*
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mRNA from alignment at P-wetherbeei_contig684:298..686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig684.1.1 ID=mRNA_P-wetherbeei_contig684.1.1|Name=mRNA_P-wetherbeei_contig684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=389bp|location=Sequence derived from alignment at P-wetherbeei_contig684:298..686+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACCATCTTCAAGGAGGTGAAGGCTACGGCGAAGGAGTTCAACAC
GCGGGGGGACCTCCAAGCAGGAGCGTCCATCTGCGCCTTCCGCAAGGTAC
AAAGACGTTGTTGCGTCGCCGCCGCCGCTGCTGCCGCGGGAGATTAACCA
GCTGTTGCCGGCCGCAGTCAACGCTTGCTTTTGGTCGCTGCTGGCCATCG
CCGCCGCCGCTCCGGCTTGTGCCTGTTAGCAGACATGCATTATTCTATCC
GCCGCTTATCGAACGTTCGGAATAGGACCGGCTGACGAACGTCTTGTCTT
TCTTCCTCCGCTTTTCTTTCGGCCCGAACTACCCGTCACTCTGGATACGA
CAGGTGGCTGATGTCATGCTGGCACACGGTGCAGTATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig684:298..686+

>mRNA_P-wetherbeei_contig684.1.1 ID=mRNA_P-wetherbeei_contig684.1.1|Name=mRNA_P-wetherbeei_contig684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig684:298..686+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACCATCTTCAAGGAGGTGAAGGCTACGGCGAAGGAGTTCAACAC
GCGGGGGGACCTCCAAGCAGGAGCGTCCATCTGCGCCTTCCGCAAGGTGG
CTGATGTCATGCTGGCACACGGTGCAGTATAA
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