mRNA_P-wetherbeei_contig6740.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6740.2.1
Unique NamemRNA_P-wetherbeei_contig6740.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: A0A7S3Y5S7_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5S7_HETAK)

HSP 1 Score: 319 bits (818), Expect = 7.320e-105
Identity = 169/295 (57.29%), Postives = 205/295 (69.49%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERCMAEGRVYLT----------SHYLARLTMECIRELFAEARDIMDWLAQLATLVANEG--QPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFF 849
            VNL+P D+P DVY GVC  V  +V    + ELP DA E  +  + +ARL   +V RK++KQTVMTSVYGVT  GAR Q+  +L +     G+  LT          S +LA LTMECI E+F EAR IMDWLA  A LVA  G   P+ W+TP+GLPV+QPYR+   + V+TL+Q +QL  + D  PVAA RQRSAFPPNFVHSLDSTHM++TAV M    L FAAVHDSYW HA +VD MNR LRE F+ELY++PVLE L+ SLR R+PG+ FPPVPPRG L L  VL+SPYFF
Sbjct:   97 VNLVPQDKPGDVYAGVCEKVIEKVEALVAEELPGDAPEGRLRAQRLARLLRGKVSRKVIKQTVMTSVYGVTPYGARLQIANQLEDIFTDFGKKVLTAEEEQDITRASQFLATLTMECIGEVFKEARRIMDWLADCAALVAGTGCGAPVAWVTPLGLPVVQPYRKNTRYVVQTLVQYLQLARSDDALPVAAQRQRSAFPPNFVHSLDSTHMMMTAVKMHEAGLDFAAVHDSYWTHAADVDTMNRLLRESFVELYQQPVLERLYDSLRKRHPGLAFPPVPPRGALDLASVLDSPYFF 391          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: A0A6H5JU39_9PHAE (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU39_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 2.280e-104
Identity = 166/296 (56.08%), Postives = 215/296 (72.64%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERCMA------------EGRVYLTSHYLARLTMECIRELFAEARDIMDWLAQLATLVANEGQPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNL PS  PQDVY GVC +V ++VA EAS      A  + + +  +A++    +DRK+VKQTVMTSVYGVTFVGAR Q+Q  L ++ +             E  VY  S Y+A+ TM+ + ELF EAR+ MDWL  +A LVA EGQPM+W+TP+GLPVLQPYRR   +QV+TLLQ V ++++SD+ PVA  RQ +AFPPNFVHSLDSTHM++TA+ M++  +PFAAVHDSYW HAGNVD MN  LR+CF++LY  P+LE+L  SLR+RYP ++FPP+P RGTL L+ V +S YFFN
Sbjct:  870 VNLSPSPEPQDVYSGVCDVVKKKVALEASTVPREGASVVELANHELAKMVDGLIDRKVVKQTVMTSVYGVTFVGARAQIQNVLGDKMIGHTDESGVPSAEVEETVYKASAYVAKHTMKVLEELFTEARNTMDWLKAVAQLVAKEGQPMSWITPLGLPVLQPYRRNDTYQVQTLLQGVHIREDSDNLPVAVKRQTTAFPPNFVHSLDSTHMMMTAIEMDKVGVPFAAVHDSYWVHAGNVDVMNDKLRQCFVDLYSGPILEDLQDSLRMRYPTIDFPPIPERGTLVLDSVKDSKYFFN 1165          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: F0XZ85_AURAN (DNA-directed RNA polymerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ85_AURAN)

HSP 1 Score: 319 bits (818), Expect = 3.110e-99
Identity = 163/285 (57.19%), Postives = 206/285 (72.28%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERC-MAEGRVYLTSHYLARLTMECIRELFAEARDIMDWLAQLATLVANEGQPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNLLP + P+DVY+GV ALVA +VA  A+ +        A+    +A++    + RK+VKQTVMTSVYGVTFVGARQQ+  RL +   + E  +YL + Y+ARLT+E + ELF  AR IM WLAQ A LV+  GQP++W+TP+GLPV+QPYRR G   V+TL Q+V L DNSD  PV+  RQ+SAFPPNFVHSLDS+HML+TAV M+ + L F AVHDSYW HA +V  MN TLR CFLELY  P+LE+L  S  LRYP  +FPP+PPRG L + KVL++ YFF+
Sbjct:  625 VNLLPGEAPRDVYEGVRALVAEKVARAATGDE-------ALETVRLAQIVDGLITRKVVKQTVMTSVYGVTFVGARQQILGRLTDAGDVDEAELYLCACYVARLTLEVLEELFTSARHIMGWLAQCARLVSLHGQPVSWITPLGLPVVQPYRRDGQHAVKTLAQTVLLVDNSDKLPVSVTRQKSAFPPNFVHSLDSSHMLMTAVEMDHRGLAFTAVHDSYWTHAADVATMNSTLRHCFLELYEAPLLEKLLESFELRYPDTDFPPLPPRGDLDIAKVLDADYFFS 902          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: A0A836CEF2_9STRA (DNA-directed RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF2_9STRA)

HSP 1 Score: 316 bits (809), Expect = 1.010e-96
Identity = 181/348 (52.01%), Postives = 211/348 (60.63%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDA--KELAVHDRNVARLAASQVDRKL------------------------------------------------VKQTVMTSVYGVTFVGARQQMQARLRER---------CMAEGRVYLT---SHYLARLTMECIRELFAEARDIMDWLAQLATLVANEGQPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDH--YPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNLLP DRP+DVY GVC LVA  V   A  ELP DA  +E   H+   AR+    VDRK+                                                VKQTVMTSVYGVTF+GAR Q+QARL ER            E R       ++YLA LTM  +  LF+EAR IMDWLA LA +VA +GQPM W+TP+GLPV+QPYRR G F ++TLLQSV L    D    PV A RQRSAFPPNFVHSLDSTHML+TA AM+ + +PFAAVHDSYW HAG+VD MN  LR+ F+ELY RP+LE+LHASL  R+P V FP VPPRG L +  V +S YFFN
Sbjct:  726 VNLLPGDRPRDVYSGVCKLVAAEVQRAADCELPADATTEEQLAHE--YARMLVGIVDRKVKFGWQQVEVLGRGVSEDILKCGTVDLKMIGSQRDDGMRXXXXXXXXXVVKQTVMTSVYGVTFIGARSQIQARLEERLALDTCADAAAVEARAAAIRGCANYLASLTMGALSGLFSEARAIMDWLATLARIVAQQGQPMAWVTPLGLPVVQPYRRGGDFTIKTLLQSVTLSGAGDDAALPVEAARQRSAFPPNFVHSLDSTHMLMTAAAMDARGIPFAAVHDSYWCHAGHVDVMNAALRDTFVELYSRPILEDLHASLTARFPDVKFPRVPPRGALDVGAVRDSAYFFN 1071          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: A0A4D9D3J6_9STRA (DNA-directed RNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J6_9STRA)

HSP 1 Score: 314 bits (805), Expect = 6.100e-96
Identity = 163/295 (55.25%), Postives = 208/295 (70.51%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERCMA-----------EGRVYLTSHYLARLTMECIRELFAEARDIMDWLAQLATLVANEGQPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNL+ S  P+DVY GVC  V + V  EA+  L   A E     +  ARL    ++RK+VKQTVMTSVYGVT+VGAR+Q+QARL+E+              E  VY  S Y+A +T+  + ELF+ AR+IM+WL+  A+LVA +GQPM+W+TP+GLPV+QPYRR     V+TL+QSV L D +D  PV+++RQRSAFPPNFVHSLDSTHML+TA  ++   +PF AVHDSYW HA NV+ MN TLRECF+ LY +PVLE L  SL  R+P V FPP+P RG L LE+V +SPYFF+
Sbjct:  812 VNLIHSAVPRDVYTGVCDRVIKHVHSEATRALGRTATEEERRQQRHARLVDGLINRKVVKQTVMTSVYGVTYVGARKQIQARLKEKFQEREKGRMLTKEEEQEVYEASRYVATVTLSKLAELFSAARNIMEWLSTCASLVARQGQPMSWVTPLGLPVIQPYRRDKGLLVKTLIQSVILVDCNDKLPVSSSRQRSAFPPNFVHSLDSTHMLMTANRLQGLGVPFTAVHDSYWCHASNVEVMNATLRECFITLYEQPVLEALRDSLVARFPDVAFPPIPQRGKLRLEEVKDSPYFFD 1106          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: A0A7S2HVI8_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVI8_9STRA)

HSP 1 Score: 301 bits (772), Expect = 6.950e-95
Identity = 155/302 (51.32%), Postives = 199/302 (65.89%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERCMAEG--------RVYLTSHYLARLTMECIRELFAEARDIMDWLAQLATLVANE----------GQPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNL P   PQDVY  VCA+V  ++ E+ S  +   ++EL   D   A+     VDRK++KQTVMTSVYGVTFVGAR+Q+  +L E+ +  G          Y  S YLAR T+E ++ELF  ARDIM+WL   A L++ +          G  ++W+TP+GLPV QPYR+ G   V+T+LQ+VQ++   D +P  + RQRSAFPPNFVHSLDSTHMLLTAV M+R  + F AVHDSYW+HA NVD MN TLR CF++LY +P+LE L      RYP +NFP +P RG L LE V +S YFFN
Sbjct:  341 VNLTPHHEPQDVYMEVCAIVNHKIDEDFSRAMTTASEEL-TEDHRFAKRLKGMVDRKVIKQTVMTSVYGVTFVGARRQIMGQLEEKFIEAGMHPDEVDREAYAASGYLARHTLEALKELFGGARDIMEWLGTCAQLISKQERDMNEDTFKGDVVSWVTPLGLPVTQPYRKFGTTMVKTVLQTVQVEMGHDKHPANSKRQRSAFPPNFVHSLDSTHMLLTAVKMDRMGIDFTAVHDSYWSHACNVDVMNDTLRGCFVDLYSQPILENLREDFITRYPNINFPEIPDRGELNLELVRQSAYFFN 641          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: Q0QFR1_ACACA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba castellanii TaxID=5755 RepID=Q0QFR1_ACACA)

HSP 1 Score: 295 bits (754), Expect = 1.170e-93
Identity = 146/288 (50.69%), Postives = 205/288 (71.18%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERC-MAEGRVYLTSHYLARLTMECIRELFAEARDIMDWLAQLATLVANEGQPMTWLTPIGLPVLQPYRRKG--FFQVRTLLQSVQL-KDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNLLPS+RPQDVY GV  LV RR+ ++A+            +   +A+    +VDRK++KQTVMTSVYGVTF+GARQQ++  L+++  +++  ++L S YLA  T   I+E+F+ AR+IM WL+  ATL+A +G+P+TW+TP+GLPV+QPYR KG     V T LQ+V L K+ +D  PV   +QR+AFPPN+VHSLDSTHM+LTA+      L +A+VHDSYW HA +VD MN  LR  F++L+ +P+L++L A  +  YPG+ FPPVPP+G L L++++ SPYFF 
Sbjct:  237 VNLLPSERPQDVYSGVVELVVRRLEDDAA------------NGVEIAQRLLGKVDRKVIKQTVMTSVYGVTFIGARQQIENALKDKGKVSDDDMFLASRYLATSTFSSIKEMFSGAREIMTWLSDCATLIAKQGKPVTWVTPMGLPVVQPYRTKGKQTQTVVTALQNVMLVKEENDSLPVNTRKQRTAFPPNYVHSLDSTHMMLTALQCHEAGLTYASVHDSYWTHASSVDTMNHILRRTFVDLHSQPLLDDLLAHFKRTYPGIEFPPVPPKGDLDLKEIINSPYFFQ 512          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: A0A059LJP9_9CHLO (DNA-directed RNA polymerase n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LJP9_9CHLO)

HSP 1 Score: 286 bits (733), Expect = 5.330e-93
Identity = 144/285 (50.53%), Postives = 199/285 (69.82%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERCMAE-GRVYLTSHYLARLTMECIRELFAEARDIMDWLAQLATLVANEGQPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNL+P + PQDVY  +  LVARRVA         DA   + H R  A LAA+ VDRKLVKQTVMTSVYGVTFVGAR+Q+ +RLRER   +   +Y  S Y A+ T++ + E+F+ A+ IM WL+  A +VA  GQ ++W+TP+GLP++QPYR+     +RTLLQ + L +N+D  PV   RQR+AFPPN++HS+DSTHM++TA    ++ + FA VHDS+W HAG+V+ MN  LR+CF+EL+ +P+LE+L   L+  +P + FPP+P  G L L+ V +S YFF+
Sbjct:   46 VNLVPGEGPQDVYSEIARLVARRVA--------ADASRGSAHAR--ALLAATAVDRKLVKQTVMTSVYGVTFVGAREQIGSRLRERGFQDDAMLYKVSCYAAKATLDSLHEMFSSAKHIMHWLSDCARVVARAGQSVSWVTPLGLPIVQPYRKSDKQHIRTLLQRLVLVENNDALPVLKMRQRTAFPPNYIHSIDSTHMMMTATRCAQEGMAFAGVHDSFWTHAGDVEKMNAILRDCFVELHSQPLLEDLINHLQTAHPNLTFPPIPDTGELDLDCVRDSTYFFS 320          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: A0A7S2HVK7_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVK7_9STRA)

HSP 1 Score: 301 bits (772), Expect = 1.580e-92
Identity = 155/302 (51.32%), Postives = 199/302 (65.89%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERCMAEG--------RVYLTSHYLARLTMECIRELFAEARDIMDWLAQLATLVANE----------GQPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNL P   PQDVY  VCA+V  ++ E+ S  +   ++EL   D   A+     VDRK++KQTVMTSVYGVTFVGAR+Q+  +L E+ +  G          Y  S YLAR T+E ++ELF  ARDIM+WL   A L++ +          G  ++W+TP+GLPV QPYR+ G   V+T+LQ+VQ++   D +P  + RQRSAFPPNFVHSLDSTHMLLTAV M+R  + F AVHDSYW+HA NVD MN TLR CF++LY +P+LE L      RYP +NFP +P RG L LE V +S YFFN
Sbjct:  599 VNLTPHHEPQDVYMEVCAIVNHKIDEDFSRAMTTASEEL-TEDHRFAKRLKGMVDRKVIKQTVMTSVYGVTFVGARRQIMGQLEEKFIEAGMHPDEVDREAYAASGYLARHTLEALKELFGGARDIMEWLGTCAQLISKQERDMNEDTFKGDVVSWVTPLGLPVTQPYRKFGTTMVKTVLQTVQVEMGHDKHPANSKRQRSAFPPNFVHSLDSTHMLLTAVKMDRMGIDFTAVHDSYWSHACNVDVMNDTLRGCFVDLYSQPILENLREDFITRYPNINFPEIPDRGELNLELVRQSAYFFN 899          
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Match: A0A7S2EID2_9STRA (DNA-directed RNA polymerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EID2_9STRA)

HSP 1 Score: 286 bits (732), Expect = 3.920e-92
Identity = 147/301 (48.84%), Postives = 201/301 (66.78%), Query Frame = 1
Query:    1 VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPD---------AKELAVHDRNVARLAASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERCMAEGR--------VYLTSHYLARLTMECIRELFAEARDIMDWLAQLATLVANEGQPMTWLTPIGLPVLQPYRRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLLTAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELHASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN 852
            VNL   + PQDVY GV   V RRVAEEAS EL  D         A   A  +   A+L    +DR +VK+TVMTSVYGVT++GAR Q+Q ++ E+  A+G         +     YLA +TM+ +  LF  AR  MDWLA  A L++ +GQP+ WL+PIG+P +QPYR+   + + TL+Q V L ++S++ P+  +RQ SAFPPN+VHSLDS+HMLLTA+ M+R+ L F+AVHDS+W HA ++D MN  LR+CF++LY +P+LEEL  +  LRYP +NFP +P RG L L +V ++PYFF 
Sbjct:   72 VNLCNENEPQDVYIGVMEEVIRRVAEEASKELDLDESTSENWTKADRTAWKNNKAAKLVNGLIDRGVVKRTVMTSVYGVTYIGARTQIQEKIEEKLEAKGHDVDEIEPEINAACGYLATMTMDVMGTLFTGARQTMDWLATCARLISQQGQPVAWLSPIGVPAVQPYRQNKPYTIYTLVQKVVLTNSSENLPIHKSRQVSAFPPNYVHSLDSSHMLLTALEMDRRGLTFSAVHDSFWTHACDIDEMNGVLRDCFVDLYDQPLLEELKRTWELRYPTLNFPDIPERGDLDLNEVKKAPYFFQ 372          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6740.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y5S7_HETAK7.320e-10557.29DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A6H5JU39_9PHAE2.280e-10456.08DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
F0XZ85_AURAN3.110e-9957.19DNA-directed RNA polymerase n=1 Tax=Aureococcus an... [more]
A0A836CEF2_9STRA1.010e-9652.01DNA-directed RNA polymerase n=1 Tax=Tribonema minu... [more]
A0A4D9D3J6_9STRA6.100e-9655.25DNA-directed RNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A7S2HVI8_9STRA6.950e-9551.32DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
Q0QFR1_ACACA1.170e-9350.69DNA-directed RNA polymerase (Fragment) n=1 Tax=Aca... [more]
A0A059LJP9_9CHLO5.330e-9350.53DNA-directed RNA polymerase n=1 Tax=Helicosporidiu... [more]
A0A7S2HVK7_9STRA1.580e-9251.32DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A7S2EID2_9STRA3.920e-9248.84DNA-directed RNA polymerase n=1 Tax=Ditylum bright... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6740contigP-wetherbeei_contig6740:1563..2981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQU5
Preferred nameRpoT
PFAMsRNA_pol,RPOL_N
Model size855
Max annot lvl2759|Eukaryota
KEGG koko:K00960,ko:K10908,ko:K11446
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000959,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034245,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098798,GO:0140053,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons3
Evalue1.02e-105
EggNOG OGsCOG5108@1|root,KOG1038@2759|Eukaryota
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size855
COG categoryK
BRITEko00000,ko01000,ko01009,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.7841897-CDS-P-wetherbeei_contig6740:1562..19821683186933.7841897-CDS-P-wetherbeei_contig6740:1562..1982Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6740 1563..1982 -
1683186933.8047993-CDS-P-wetherbeei_contig6740:2331..24901683186933.8047993-CDS-P-wetherbeei_contig6740:2331..2490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6740 2332..2490 -
1683186933.819937-CDS-P-wetherbeei_contig6740:2705..29811683186933.819937-CDS-P-wetherbeei_contig6740:2705..2981Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6740 2706..2981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6740.2.1prot_P-wetherbeei_contig6740.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6740 1563..2981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6740.2.1

>prot_P-wetherbeei_contig6740.2.1 ID=prot_P-wetherbeei_contig6740.2.1|Name=mRNA_P-wetherbeei_contig6740.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=285bp
VNLLPSDRPQDVYQGVCALVARRVAEEASVELPPDAKELAVHDRNVARLA
ASQVDRKLVKQTVMTSVYGVTFVGARQQMQARLRERCMAEGRVYLTSHYL
ARLTMECIRELFAEARDIMDWLAQLATLVANEGQPMTWLTPIGLPVLQPY
RRKGFFQVRTLLQSVQLKDNSDHYPVAANRQRSAFPPNFVHSLDSTHMLL
TAVAMERQALPFAAVHDSYWAHAGNVDAMNRTLRECFLELYRRPVLEELH
ASLRLRYPGVNFPPVPPRGTLPLEKVLESPYFFN*
back to top

mRNA from alignment at P-wetherbeei_contig6740:1563..2981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6740.2.1 ID=mRNA_P-wetherbeei_contig6740.2.1|Name=mRNA_P-wetherbeei_contig6740.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1419bp|location=Sequence derived from alignment at P-wetherbeei_contig6740:1563..2981- (Phaeothamnion wetherbeei SAG_119_79)
GTGAACCTGTTGCCGAGCGACCGGCCGCAGGACGTCTACCAGGGCGTCTG CGCGCTCGTCGCTCGCCGCGTCGCCGAGGAGGCCTCCGTGGAGTTGCCGC CCGACGCCAAAGAGCTCGCCGTGCATGACCGCAACGTGGCGCGGCTGGCG GCGTCGCAGGTCGACCGCAAGCTCGTCAAACAGACTGTCATGACGAGCGT CTACGGGGTAACGTTCGTTGGGGCGCGGCAGCAGATGCAGGCGCGGCTGC GGGAGCGGTGCATGGCGGAGGGCCGCGTCATGGACGAGGCTCTCGAGCGC GAGGTGAGCTGAAAGTATTGGTGCTCTTGACTTGTCGTCTACTCTGTCAG CAGATACTATAGGTACATTTTTTGGTTTTTATCATCTGTGCAGATCTTTC TAGGCCAGCTCCAACAGAAAATTCTGGTATGAGGAAGGGAAAAGCGTGAG CGCTCGTCTCCACGCTTGCCCCCCCAAAACACTGTAACCAGGTGTACCTG ACGTCGCACTACCTGGCGCGGCTGACGATGGAATGCATCCGGGAGCTGTT CGCGGAGGCGCGTGACATCATGGACTGGCTGGCGCAGCTGGCAACACTCG TGGCCAATGAAGGACAGCCCATGACGTGGCTCACGCCCATCGGCCTGCCG GTGAGTAAGGAGCTCGCGCAGCGCTGGCTGCTTGGGTTGTGTGCCGCTTG CTTCTCTTTTCGGATCCTTTCTTGTTCAGCGTCATCATTTGGGTTGCAGT TTGATGGGCTGGGCAGTGCGATTTCGGCCATCGAGAGTAAGGAAGGGTTC GGCCTGTCGGCCGCCATCCCGTTCCTTGGCAACGAAGGGGCATGATGCGG ATATTCTCGTCCCTTCCCCTTCGTAATTTGACAGACGCGCAGCTATGCCC TGCGTGAGTATTGATCCTTTTCATCGGTCTCTTCTTCTTTTCTTCGCCGG GTCGCCGGGTCGCCGGGTCATTCACATTCTGTGCTTTGGGCCCCAACAGG TGCTGCAGCCGTACCGGCGCAAGGGCTTCTTCCAAGTGCGCACCCTCCTG CAGAGCGTACAGCTGAAGGACAACAGTGACCATTACCCCGTTGCCGCCAA CCGCCAGCGCTCGGCTTTTCCGCCAAACTTCGTGCACTCGCTCGATTCGA CGCACATGCTCCTGACGGCCGTCGCCATGGAGCGCCAGGCGCTGCCCTTC GCGGCGGTGCACGACTCGTATTGGGCGCATGCCGGCAACGTCGATGCCAT GAACCGGACGCTGCGTGAGTGCTTCCTGGAGCTGTACCGGCGGCCGGTGC TCGAGGAGCTGCACGCGTCGCTGCGGCTGCGCTATCCGGGGGTGAACTTC CCGCCAGTGCCGCCGCGGGGCACACTTCCGCTGGAAAAGGTGCTCGAGAG CCCGTACTTCTTCAATTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6740:1563..2981-

>mRNA_P-wetherbeei_contig6740.2.1 ID=mRNA_P-wetherbeei_contig6740.2.1|Name=mRNA_P-wetherbeei_contig6740.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig6740:1563..2981- (Phaeothamnion wetherbeei SAG_119_79)
GTGAACCTGTTGCCGAGCGACCGGCCGCAGGACGTCTACCAGGGCGTCTG
CGCGCTCGTCGCTCGCCGCGTCGCCGAGGAGGCCTCCGTGGAGTTGCCGC
CCGACGCCAAAGAGCTCGCCGTGCATGACCGCAACGTGGCGCGGCTGGCG
GCGTCGCAGGTCGACCGCAAGCTCGTCAAACAGACTGTCATGACGAGCGT
CTACGGGGTAACGTTCGTTGGGGCGCGGCAGCAGATGCAGGCGCGGCTGC
GGGAGCGGTGCATGGCGGAGGGCCGCGTGTACCTGACGTCGCACTACCTG
GCGCGGCTGACGATGGAATGCATCCGGGAGCTGTTCGCGGAGGCGCGTGA
CATCATGGACTGGCTGGCGCAGCTGGCAACACTCGTGGCCAATGAAGGAC
AGCCCATGACGTGGCTCACGCCCATCGGCCTGCCGGTGCTGCAGCCGTAC
CGGCGCAAGGGCTTCTTCCAAGTGCGCACCCTCCTGCAGAGCGTACAGCT
GAAGGACAACAGTGACCATTACCCCGTTGCCGCCAACCGCCAGCGCTCGG
CTTTTCCGCCAAACTTCGTGCACTCGCTCGATTCGACGCACATGCTCCTG
ACGGCCGTCGCCATGGAGCGCCAGGCGCTGCCCTTCGCGGCGGTGCACGA
CTCGTATTGGGCGCATGCCGGCAACGTCGATGCCATGAACCGGACGCTGC
GTGAGTGCTTCCTGGAGCTGTACCGGCGGCCGGTGCTCGAGGAGCTGCAC
GCGTCGCTGCGGCTGCGCTATCCGGGGGTGAACTTCCCGCCAGTGCCGCC
GCGGGGCACACTTCCGCTGGAAAAGGTGCTCGAGAGCCCGTACTTCTTCA
ATTGA
back to top