mRNA_P-wetherbeei_contig674.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig674.1.1
Unique NamemRNA_P-wetherbeei_contig674.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig674contigP-wetherbeei_contig674:1225..2642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size757
Hectar predicted targeting categoryother localisation
Exons4
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.505557-CDS-P-wetherbeei_contig674:1226..14181683186933.505557-CDS-P-wetherbeei_contig674:1226..1418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 1227..1418 -
1683186933.5171926-CDS-P-wetherbeei_contig674:1611..17131683186933.5171926-CDS-P-wetherbeei_contig674:1611..1713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 1612..1713 -
1683186933.5265024-CDS-P-wetherbeei_contig674:1987..20531683186933.5265024-CDS-P-wetherbeei_contig674:1987..2053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 1988..2053 -
1683186933.53599-CDS-P-wetherbeei_contig674:2249..26421683186933.53599-CDS-P-wetherbeei_contig674:2249..2642Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 2250..2642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig674.1.1prot_P-wetherbeei_contig674.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig674 1227..2642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig674.1.1

>prot_P-wetherbeei_contig674.1.1 ID=prot_P-wetherbeei_contig674.1.1|Name=mRNA_P-wetherbeei_contig674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
GSESTPRQPRCGLCHSRLASVSCRECRLHCCIGCSTAAHEKPDRNGHTVE
PYRPPRPGAVKRRSSMQQPRTVAAAAAAGTAWGGAAAPLPPPPPKSEIAI
SLTVNAARAAALVKKQMIVRSREIVAAEQAKIRNRLAAEAEMAAQEEREK
LLREEASKASRREVAAAIAIEAAARGWAARAAVAKMNEERVTTADARRRA
VREAAAVAAQRICRGGVVRLWFKRRGVNVRARGAERVAAAERADIDFARR
R
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mRNA from alignment at P-wetherbeei_contig674:1225..2642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig674.1.1 ID=mRNA_P-wetherbeei_contig674.1.1|Name=mRNA_P-wetherbeei_contig674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig674:1225..2642- (Phaeothamnion wetherbeei SAG_119_79)
GGATCGGAGTCTACGCCGCGGCAGCCGCGGTGCGGGCTCTGCCACAGCCG
CTTGGCGTCCGTGTCGTGCCGTGAATGCCGCCTCCACTGCTGCATCGGTT
GCAGTACCGCCGCCCACGAGAAGCCGGACCGAAACGGGCATACTGTGGAG
CCGTACCGGCCACCCAGACCCGGCGCAGTGAAGCGGAGAAGCTCAATGCA
GCAACCCAGGACGGTGGCGGCGGCAGCGGCGGCGGGGACTGCATGGGGGG
GGGCTGCTGCCCCACTGCCACCGCCGCCCCCAAAGAGCGAAATCGCAATC
AGTCTGACGGTGAATGCGGCGCGGGCGGCGGCGCTGGTGAAGAAACAGAT
GATTGTGCGCAGCCGGGAGATCGTCGCGGCGGAGCAAGCCAAGGTGAGTA
CGCGGCCGTACTCTATCCATTCTTTCAACGAGAAGCAATTTGCCTCATTT
TATTCCATCAACTTTGCTGACGCTGACGACAGCGCCAAGCGGCAATGCTG
CTACTTGTGGAGCTTTTTACCAGCACTTCGCCACTGGCGTCATGTCTCGT
CCCTGCTGGCATGAACGTTTGGAACACGCCTGTCGGCAGATTAGGAATAG
GCTGGCAGCCGAGGCCGAGATGGCGGCCCAGGAGGAGCGCGAGAAGCTGC
TGCGGGTAAGTCTTAAGGCGAGGGTGCCAAAGGCTTCAATGGCGGCGGCA
GCATCTGCTGCTATAGCAGAGGATGAATCATTGTCTCGGCTCCGGCGTCT
AGCGCACTGGCAACGTCGTTTTTGCGGACCACACCTTTGCACCAACCACT
GATCATACATAACTGGCATTCTCGAGAAGCGGCGACTGCCACGGCGAGTT
CGCCAGCAGAGAAGTCGGATTCTGTGGTTGCCTTCCCTGATTCAGCTTCC
TTCCTTCCCTCTGTTTGCCTTTCCTTTAGGAAGAGGCGTCTAAGGCGAGC
CGCCGAGAGGTCGCTGCGGCGATCGCGATCGAGGCGGCGGCACGCGGCTG
GGCGGCGCGGGCAGCAGTCGCAAAGATGAACGTGAGAAAGACTATAAACA
TGTTCAGTTCACCTACCGTCTTGCTTGCATTCTTCCCACTCTTTTAACCA
GGCAACTATTCCGACACTGCTACCTACGTCTATCGTCCTCATCTAAACTG
CTTTTGACCCACACCGTCTCTGACCTCATCTCTTGCTACCCGGCCACCCT
CCCCGAAATTGCCACCAAGAAAAGGAGGAGAGGGTGACCACCGCCGACGC
CCGCCGACGCGCTGTGCGAGAGGCGGCGGCGGTCGCCGCGCAGAGGATCT
GCCGGGGCGGTGTGGTCCGGCTCTGGTTCAAGCGGCGGGGAGTTAATGTC
CGCGCCCGCGGTGCCGAGAGGGTTGCCGCCGCCGAACGGGCGGACATCGA
CTTTGCCAGGCGGCGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig674:1225..2642-

>mRNA_P-wetherbeei_contig674.1.1 ID=mRNA_P-wetherbeei_contig674.1.1|Name=mRNA_P-wetherbeei_contig674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig674:1225..2642- (Phaeothamnion wetherbeei SAG_119_79)
GGATCGGAGTCTACGCCGCGGCAGCCGCGGTGCGGGCTCTGCCACAGCCG
CTTGGCGTCCGTGTCGTGCCGTGAATGCCGCCTCCACTGCTGCATCGGTT
GCAGTACCGCCGCCCACGAGAAGCCGGACCGAAACGGGCATACTGTGGAG
CCGTACCGGCCACCCAGACCCGGCGCAGTGAAGCGGAGAAGCTCAATGCA
GCAACCCAGGACGGTGGCGGCGGCAGCGGCGGCGGGGACTGCATGGGGGG
GGGCTGCTGCCCCACTGCCACCGCCGCCCCCAAAGAGCGAAATCGCAATC
AGTCTGACGGTGAATGCGGCGCGGGCGGCGGCGCTGGTGAAGAAACAGAT
GATTGTGCGCAGCCGGGAGATCGTCGCGGCGGAGCAAGCCAAGATTAGGA
ATAGGCTGGCAGCCGAGGCCGAGATGGCGGCCCAGGAGGAGCGCGAGAAG
CTGCTGCGGGAAGAGGCGTCTAAGGCGAGCCGCCGAGAGGTCGCTGCGGC
GATCGCGATCGAGGCGGCGGCACGCGGCTGGGCGGCGCGGGCAGCAGTCG
CAAAGATGAACGAGGAGAGGGTGACCACCGCCGACGCCCGCCGACGCGCT
GTGCGAGAGGCGGCGGCGGTCGCCGCGCAGAGGATCTGCCGGGGCGGTGT
GGTCCGGCTCTGGTTCAAGCGGCGGGGAGTTAATGTCCGCGCCCGCGGTG
CCGAGAGGGTTGCCGCCGCCGAACGGGCGGACATCGACTTTGCCAGGCGG
CGC
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