mRNA_P-wetherbeei_contig673.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig673.1.1
Unique NamemRNA_P-wetherbeei_contig673.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: D8LB62_ECTSI (Metallo-beta-lactamase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB62_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 1.440e-70
Identity = 129/293 (44.03%), Postives = 184/293 (62.80%), Query Frame = 1
Query:   19 GFCVTGAWTKAGISTSILVRHRHFR-RLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSLSKGV-AKYVVPPDLVGPLADAKDAFERLNGAPIPMDIISVG--------SGCVVRPFATQHRVHSQGYCLVRVARRGLRPELRGLDGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPCVWAARLLMLEVTYLDGPEDSARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSARVGVALQLFGRPEAVTSLAAFAAGG 867
            GF V GAW+KAG+ +   VRHRH   +  + FD+G+CP ++    +VF+SHGH DH GAI SHARLR+LS+G  AKY +  +L   +   + AFE + GA I MDI++VG         GC VRPF  +HRV + G+ L+R+   GL+ E R LDGRE+   R  G  ++   E  EV Y+GDT M  L+S P VW AR+L++EVTYLDG   +A K  H+H  D++  + RL  ++Q+V+ H+S+R+    ++L L++AALPP    +V VAL  FG  + ++ L  + AGG
Sbjct:  278 GFFVAGAWSKAGVCSCFNVRHRHLLGKHGVVFDMGVCPSEVLHVAHVFVSHGHLDHCGAIVSHARLRALSQGPPAKYYMGAELASGMEKVRKAFEEVEGASIAMDIVAVGPEDRVDLGQGCFVRPFLVKHRVDALGFALMRLKTDGLKHEYRQLDGREIGALRKRGVDVQSSHETVEVVYTGDTVMDGLVSQPLVWEARMLIMEVTYLDGDGSAAAKNFHVH--DVLDNMDRLRRVEQLVVAHVSERHGSHRNVLRLLSAALPPSFVNKVSVALGEFGASQHLSFLEDYVAGG 568          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A4D9D594_9STRA (Lactamase_B domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D594_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.060e-63
Identity = 123/288 (42.71%), Postives = 172/288 (59.72%), Query Frame = 1
Query:   13 EDGFCVTGAWTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSLSKGVAKYVVPPDLVGPLADAKDAFERLNGAPIPMDIISVGSG--CVVRP------FATQHRVHSQGYCLVRVARRGLRPELRGLDGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPCVWAARLLMLEVTYLDGPEDSARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPP--EVSARVGVALQLFGRPEAVTSL 846
            + GF ++ AW+ AGI T I +RHR F  L IA DIG    +   A ++F+SHGH DH GA+ +HAR R+LS   AKY VP     PL  AK A+E L+G     +I+ V  G  C + P      F T+HRV SQGY ++R   +GL+   R L   ELARRR  GE++  +E++ EVAY+GDT + A+L  P V  ARLL+LE TYL+G    A  W H+H+ +IV      A  ++VV CH+S +Y+  +++L    + + P   ++A++GV L  FGR E VT L
Sbjct:   72 DAGFEISSAWSVAGIGTCIQLRHRAFG-LHIAMDIGTSAGETLGAGHIFVSHGHIDHIGALLNHARARTLSNKPAKYYVPVPATEPLLRAKAAYEALDGCAFNAEIVGVEPGDICRIHPNVRVEVFPTKHRVPSQGYAIIREKSKGLKAGCRNLSSHELARRRKQGESVVELEDIVEVAYTGDTILKAVLDQPLVRQARLLILECTYLEGEIVWAHSWHHVHMQEIVKHAAAFASNERVVCCHVSRKYKRWDNVLRCFQSGMAPVPALAAKIGVTLAGFGRTEPVTWL 358          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A1I8F7R7_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8F7R7_9PLAT)

HSP 1 Score: 138 bits (348), Expect = 2.110e-33
Identity = 95/291 (32.65%), Postives = 134/291 (46.05%), Query Frame = 1
Query:   40 WTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSL-SKGVAKYVVPPDLVGPLADAKDAFERLNG------------------------------------APIPMDIISVGSGCVVRPFATQHRVHSQGYCLVRVARRGLRPELRGLDGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVP--CVWAARLLMLEVTYLDGPEDSARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSAR 795
            W+ +G  T I+V    FR   +A DIG CP    +AD+VFISHGH DH GA+  H R R L     A Y VP  LV PL D    F  ++G                                       P D + +     +RPFAT HRV S G CLV   R  L P+  GL G ELA    +GE +        + Y+GDT    L   P   +   RLL+ E+TY++GP D+A K+ H HL+D  +       + Q++  H S R+   + +++ +  +LP E+ ++
Sbjct:   30 WSVSGFETCIVVHGPSFR---LALDIGACPPQAISADHVFISHGHVDHCGALHQHMRRRQLVGLPPATYYVPEHLVQPLIDIARLFSVVHGDEDEDNEGGSAKLSTKDKKSKKEDATVADGASAEAGTATPGDDLQLSKNLRIRPFATDHRVPSIG-CLVYCKRSQLLPKYAGLPGAELAELARNGEQLREARWEPAIGYTGDTRFTVLACPPEPDLLKVRLLVCELTYVEGPTDTAEKYGHCHLHDFSSRANLFDNVGQLLFVHFSRRH-SPDQVINAVLTSLPEELRSK 315          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A2E7UUB6_9DELT (Lactamase_B domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7UUB6_9DELT)

HSP 1 Score: 126 bits (317), Expect = 3.710e-31
Identity = 89/265 (33.58%), Postives = 137/265 (51.70%), Query Frame = 1
Query:   37 AWTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSL-SKGVAKYVVPPDLVGPLADAKDAFERLNGAPIPMDIISVG--------SGCVVRPFATQHRVHSQGYCLVRVARRGLRPELRGLDGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPCVWAARLLMLEVTYLDGPED--SARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSARV 798
            A + AG+ T I      F +L   FDIG+CPQ       V  +H H DH G++  H   R+L     A+YVVPP+ +       DA+ +L+   +  D+ +VG        SG     F   H + +QGY + R  ++ L+PE +GL GRE+AR R  G A+   E+V  +A++GD+    +  VP +  ARLL++E+T+LD       ARK  H+HL D++  +  L   + ++  H+S RY    +  +L+ A LP     RV
Sbjct:   11 AISTAGLGTCI-----QFPQLDFCFDIGVCPQSAIRLRTVLFTHAHIDHMGSVVQHCASRTLLGMKPARYVVPPEHLTAFHGVMDAWGQLDRTRLHYDVEAVGVGETTPLRSGHYATAFRAPHTMPAQGYVVYRKNQK-LKPEYQGLPGREIARLRRDGVAVVRREDVPLIAFTGDSTADVIDRVPDLRRARLLVMELTFLDDALSVRDARKRGHVHLEDLIPRLEHLEN-EHILFTHLSARYPHGRAN-ALLQAQLPEAWRGRV 267          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A0L8HNC0_OCTBM (Lactamase_B domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8HNC0_OCTBM)

HSP 1 Score: 127 bits (320), Expect = 1.400e-30
Identity = 92/279 (32.97%), Postives = 139/279 (49.82%), Query Frame = 1
Query:   37 AWTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSLSKGV-AKYVVPPDLVGPLADAKDAFERLNGAPI---PMDI--------ISVGSGCVVRPFATQHRVHSQGYCLVRVARRGL--RPELRGLDGRELARRRLSGEAIEL--VEEVTEVAYSGDTEMAALLS--VPCVWAARLLMLEVTYLDGPE----DSARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSARVGVA 807
            AW+ +G+ TS++V+    + L +AFDIG   +      +VFISHGH DH   +F HA  R+L     A Y VPP LV PL +  +    L+  P     +DI        + + S  +VRPFAT HRV SQGY    V  R L  +P  R L  ++L       + + L  V  V EVA++GDT     L    P +   +LL++E TYL+G        AR+  H HL++I+        +  +++ H+SD+Y   +     +   LP ++  +V +A
Sbjct:  112 AWSLSGLETSVVVQTVEDKSLSVAFDIGYATRASVRCKHVFISHGHLDHVSGLFQHATKRNLYNWTPATYYVPPHLVVPLKEIGEQMYSLSNTPPVLKQLDIQPIEQGNSVQISSQYIVRPFATYHRVLSQGYL---VYHRTLTPKPHFRHLSSKQLTALEAENKNLSLYDVHYVPEVAFTGDTTFEVFLMNPPPDLLKVKLLIMEATYLEGFTPGIISKARQRGHTHLSEIIEHASLFDDINHLLLIHMSDKY-SVQFATDAVQYQLPGKLKEKVQIA 386          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A812BWH1_SEPPH (Rnz n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BWH1_SEPPH)

HSP 1 Score: 127 bits (318), Expect = 2.070e-30
Identity = 91/276 (32.97%), Postives = 141/276 (51.09%), Query Frame = 1
Query:   40 WTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSL-SKGVAKYVVPPDLVGPLADAKDAFERLNGAPI-----------PMDIISVGSGCVVRPFATQHRVHSQGYCLVRVARRGLRPELRGLDGRELA--RRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPC--VWAARLLMLEVTYLD----GPEDSARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSARVGVA 807
            W+ +G+ T +++     ++L + FDIG   +       VFISHGH DH   +F HA  RSL +   A Y VPP+LV  L +       L+G P            P D + V     +RPFAT HRV SQGY L    +R L+P  R L  +E+A    +   E I  V  + EVA++GDT     L+ P   +   R+L+LE TYL+    G    AR+  H HL++I+      + ++++V+ H+SD+Y  + +    ++  +PP +  +V +A
Sbjct:   97 WSISGLETCVVINAEDDKKLAVTFDIGYTTRPSVRCQQVFISHGHMDHVSGLFQHATKRSLYNLSPAVYYVPPNLVETLRNVGKQLHSLSGTPDILLDLDIRPIQPGDSVLVTPEYEIRPFATFHRVPSQGYLLYHRYKR-LKPLYRHLRPKEIAVMENQCREENIYEVSWLPEVAFTGDTTFELFLNNPPADLLKVRVLILEATYLENVTPGIVRKARERGHTHLSEIIDHAHLFSDVERLVLIHLSDKYSSSFA-RDAVSFQMPPSLLNKVVIA 370          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A8J1TNG7_OWEFU (Ofus.G043399 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TNG7_OWEFU)

HSP 1 Score: 126 bits (317), Expect = 2.300e-30
Identity = 94/278 (33.81%), Postives = 138/278 (49.64%), Query Frame = 1
Query:   40 WTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSL-SKGVAKYVVPPDLVGPLADAKDAFE----------RLNGAPIPM-DIISVGSGCVVRPFATQHRVHSQGYCLVRVARRGLRPELRGLDGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPC---VWAARLLMLEVTYLDGPED--------SARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSARVGV 804
            W+ +GI TSI +   H   L +AFD+G   ++     YVFISHGH DH  AI  HA  R L S   A Y +P  L+  +    D+F            +N  PI + + I       V PFAT+HRV SQGY L    R+ L+ E + L  +E+ +R  +GE +  V    E+AY+GDT M  +   P    +   +LL+ E TY+D   D         AR+  H HL +IV  +  L  +Q +++ H SD+Y  +  I   +  ++P E+  +V V
Sbjct:   85 WSISGIETSISI---HKDNLNVAFDMGFSHREAVRCPYVFISHGHIDHIAAIPQHAAKRDLYSMKPATYYMPGSLIDSVKKICDSFSDMHEHLESLTNINLQPIELGESIQFAPNWTVEPFATKHRVESQGYILYH-QRKHLKEEYKKLSSQEIGKRVRAGEQVHNVVRTPEIAYTGDT-MFDIFHNPDNGDLLKVKLLITECTYIDNEVDFKGKTSVEKARERGHTHLQEIVVNLDILQDVQSIMLVHFSDKY-SSRFIQETVMQSVPAEMRHKVFV 356          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A7C5MYX4_9DELT (MBL fold metallo-hydrolase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5MYX4_9DELT)

HSP 1 Score: 124 bits (312), Expect = 2.350e-30
Identity = 87/266 (32.71%), Postives = 140/266 (52.63%), Query Frame = 1
Query:   34 GAWTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSLS-KGVAKYVVPPDLVGPLADAKDAFERLNGAPIPMDIISVGSG--------CVVRPFATQHRVHSQGYCLVRVARRGLRPELRGLDGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPCVWAARLLMLEVTYLDGPED--SARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSARV 798
            G +T  G+S   +        L +  D+G+  +  AA D + +SH H DH G++ +   LR L+ +G  + V+P  +V  L D   A  +L    + ++   V +G          VR F T H V S GY L R   + L+PEL GL+GRE+A RR +GE + +V +  EVAY+ DT +  +   P +  +++L+LE ++LD  +D  S+R   H+HL++I +   R A  + +V+ H S  Y+  E +  L+   LPP +  RV
Sbjct:    8 GPYTIRGVSVGGIYTSLALPELGVLLDVGLAARSAAAHDVLLLSHAHADHVGSLMTLLGLRGLTNRGPLRLVMPAAIVDTLMDGLRAMSKLQRYELTIEPEGVVAGDELQLKGDLWVRAFPTFHPVPSLGYQLFRRVNK-LKPELVGLEGREIAARRKAGEDVHVVVDRPEVAYATDTLIEVIEETPAILESKVLILECSFLDERKDRQSSRAGCHVHLDEIASRADRFAN-EHLVLMHFSQIYKPQE-VKPLLEERLPPGLFRRV 270          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A2C9KGS2_BIOGL (Lactamase_B domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KGS2_BIOGL)

HSP 1 Score: 126 bits (317), Expect = 3.250e-30
Identity = 87/274 (31.75%), Postives = 143/274 (52.19%), Query Frame = 1
Query:   37 AWTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSLSKGV--AKYVVPPDLVGPL----------ADAKDAFERLNGAP-IPMDIISVGSGCVVRPFATQHRVHSQGYCLVRVARRGLRPELRGLDGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPC--VWAARLLMLEVTYLD-----GPEDSARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSARV 798
            AW+ +G+ + I+++      + + FD+GI   +   A  VFI+HGH DH GA+ SH   R L  G+  A+Y VPP LV PL          A+  +A + +N  P +  D++ + S   V+ F T HR+ SQGY L +  ++ L+PELRGL G E+A    +G+ I  +    E+AY GDT     L+ P   +   +LL+ E T+LD          A++  H HL++++      + +  +V+ H S++Y  ++ I       LP ++  +V
Sbjct:  104 AWSVSGLESCIVIKSDD---IVLTFDMGIALPESLKASSVFITHGHVDHIGAVASHVSKRGLG-GLKPARYFVPPHLVEPLKSSLQAHYLMAETVEALKDVNVLPFVESDVVRLNSSYFVKAFPTIHRIPSQGYILYKETKK-LKPELRGLQGFEIAAMHRAGQEIHEIVTTPELAYCGDTVFDVFLNPPNPDLLKVKLLITEATFLDEEIGKNMIQKAKERGHTHLSELIQHAELFSEVGHIVLVHFSNKY-SSKYIKDCFFHRLPQQLRGKV 371          
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Match: A0A0U9HQI1_KLENI (tRNAse Z1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HQI1_KLENI)

HSP 1 Score: 123 bits (309), Expect = 2.330e-29
Identity = 95/253 (37.55%), Postives = 133/253 (52.57%), Query Frame = 1
Query:  103 IAFDIGICPQDMAAADYVFISHGHTDHAGAIFSHARLRSL-SKGVAKYVVPPDLVGPLADAKDAFERLNGAPIPMDIISVGSG--------CVVRPFATQHRVHSQGYCLVRVARRGLRPELRGLDGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPC---VWAARLLMLEVTYLDGPE--DSARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESILSLIAAALPPEVSARVGVALQLF 819
            +AFD+G CPQ     D V ISH H DH G +   A  R L S    + VVP  +V  + +  +AF  L+ A +   +I +  G          V+PF T H V SQGY +V   R+ L+ E  GL G E+ R R SG  I  VEEV EVA++GDT  A  L+ P    V  A+LL++E+T++D     + ARKW H H++++V  +  L   + ++  H S RYR  + IL  I   LPP    +V   L+ F
Sbjct:   98 VAFDVGRCPQRAVFQDNVLISHAHMDHIGGVCLQAATRGLFSLKPPRIVVPKVIVPGVENLFNAFRALDNAELEHKLIGLEIGEELRLSGELFVKPFRTYHVVPSQGY-VVYSRRQKLKKEFVGLPGPEIGRLRKSGVEITDVEEVPEVAFTGDTT-AEFLTDPGNADVLRAKLLIMEMTFIDDSSTVEHARKWGHTHIDEVVP-LAHLFQNEAILFIHFSARYR-RKDILEAIER-LPPGFREKVTPLLERF 345          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig673.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB62_ECTSI1.440e-7044.03Metallo-beta-lactamase superfamily protein n=2 Tax... [more]
A0A4D9D594_9STRA1.060e-6342.71Lactamase_B domain-containing protein n=2 Tax=Mono... [more]
A0A1I8F7R7_9PLAT2.110e-3332.65Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A2E7UUB6_9DELT3.710e-3133.58Lactamase_B domain-containing protein n=1 Tax=Delt... [more]
A0A0L8HNC0_OCTBM1.400e-3032.97Lactamase_B domain-containing protein n=2 Tax=Octo... [more]
A0A812BWH1_SEPPH2.070e-3032.97Rnz n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A... [more]
A0A8J1TNG7_OWEFU2.300e-3033.81Ofus.G043399 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A7C5MYX4_9DELT2.350e-3032.71MBL fold metallo-hydrolase n=1 Tax=Polyangiaceae b... [more]
A0A2C9KGS2_BIOGL3.250e-3031.75Lactamase_B domain-containing protein n=1 Tax=Biom... [more]
A0A0U9HQI1_KLENI2.330e-2937.55tRNAse Z1 n=1 Tax=Klebsormidium nitens TaxID=10523... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig673contigP-wetherbeei_contig673:550..2742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LB62
PFAMsAnk_2,Ank_4,Fic
Model size867
Max annot lvl2759|Eukaryota
KEGG koko:K08257,ko:K17299
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.36e-71
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-27_005090.1
EC3.2.1.101
Descriptionprotein ubiquitination
Cds size867
COG categoryI
CAZyGH76
BRITEko00000,ko00537,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.875298-CDS-P-wetherbeei_contig673:549..7641683186932.875298-CDS-P-wetherbeei_contig673:549..764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 550..764 +
1683186932.8853137-CDS-P-wetherbeei_contig673:1090..12051683186932.8853137-CDS-P-wetherbeei_contig673:1090..1205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 1091..1205 +
1683186932.894247-CDS-P-wetherbeei_contig673:1686..19561683186932.894247-CDS-P-wetherbeei_contig673:1686..1956Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 1687..1956 +
1683186932.9024558-CDS-P-wetherbeei_contig673:2313..23961683186932.9024558-CDS-P-wetherbeei_contig673:2313..2396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 2314..2396 +
1683186932.9133482-CDS-P-wetherbeei_contig673:2558..27421683186932.9133482-CDS-P-wetherbeei_contig673:2558..2742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 2559..2742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig673.1.1prot_P-wetherbeei_contig673.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig673 550..2742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig673.1.1

>prot_P-wetherbeei_contig673.1.1 ID=prot_P-wetherbeei_contig673.1.1|Name=mRNA_P-wetherbeei_contig673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=289bp
MSSPEDGFCVTGAWTKAGISTSILVRHRHFRRLCIAFDIGICPQDMAAAD
YVFISHGHTDHAGAIFSHARLRSLSKGVAKYVVPPDLVGPLADAKDAFER
LNGAPIPMDIISVGSGCVVRPFATQHRVHSQGYCLVRVARRGLRPELRGL
DGRELARRRLSGEAIELVEEVTEVAYSGDTEMAALLSVPCVWAARLLMLE
VTYLDGPEDSARKWQHIHLNDIVACIGRLAPMQQVVICHISDRYRDAESI
LSLIAAALPPEVSARVGVALQLFGRPEAVTSLAAFAAGG
back to top

mRNA from alignment at P-wetherbeei_contig673:550..2742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig673.1.1 ID=mRNA_P-wetherbeei_contig673.1.1|Name=mRNA_P-wetherbeei_contig673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2193bp|location=Sequence derived from alignment at P-wetherbeei_contig673:550..2742+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTCTCCTGAGGACGGTTTCTGCGTAACTGGGGCTTGGACAAAGGC CGGCATCTCCACGTCCATCCTCGTCCGTCACCGCCACTTTCGGAGGCTCT GCATTGCTTTCGATATTGGGATTTGTCCGCAGGACATGGCAGCGGCCGAC TACGTCTTCATCTCGCATGGACATACCGATCACGCTGGAGCTATCTTTAG CCACGCAAGGTTAAGGTAAGCGCGCTACAGCAAGAGTGACTTCCAGTCTA TCCAATCTCTCCACTTTCAGCCAATACAAACGCTTTTTGCAGAATTGAAT CGAACAAGAAGGAGAAGACCTGCCGTGCTAGCCTATTTTCTATAGAATAG GAATCTTTTGCTCCAATGAGAGATGACCAGGACAGTTTCATGCAAACATA GAGTTTTGTGGAAGTGAATATGCTCACAGATGTACGCGCTCTTAGTGCCG CGACACCACACCACACGGTTCCGGGCGCATACTCTTCTCTGGTCCATAAA CGCAAATACCCTCCGTTTTCTGGCGCGGTTCTCTTATCCAGGTCGCTGAG CAAAGGCGTTGCCAAATACGTGGTGCCGCCGGATCTGGTGGGGCCACTGG CGGATGCCAAGGACGCCTTCGAGCGGCTCAACGGGGCGCCCATCCCGATG GATATTGTGCCCCTCGCGCCGGGCCAGGAGGCGAGTTTCAACCGCAGTGC CGAAGACTGAGCCTTGATCCTTTTGCTTGCTTTCTAATTTGCTGCATTTT CGCTATGACTAGGCTACTTTGTTGTAACCTATGAAAGGTGTTGAGTTCGG TCTCTTTTTCATCTTTTGTCGCTGCACATTGTTATTGGGGCACGTCACGT CTCAAATCTGTTGTTCCCCTTTTCTCGTTGGATCTTCCGCCGGAATTCGG TTTTGTCCGTTGCGATCTCGTCAAAGCTCTGCGCTTTAAAAGATGTGGCG ATGCCGAGGTCTGACTTTCCATTGCACTTCCGAATATTGTGGCCACGTCT ATGCTCTCCGGCCAAGGCTGGCACCGCAAAGCATCGCAGGCCTCTAGCTA AACCCATCTCACGTCTGCTCCCCTCCGATGCCGCACCGGCCTGCCGTCTC GTGTTCCCGACGGCGCGTTTGACGGTTCGGTGCACAGATCTCCGTGGGCA GCGGCTGCGTTGTGCGGCCCTTCGCGACGCAGCACCGCGTTCACAGCCAG GGTTACTGCCTGGTGCGCGTCGCCCGGCGCGGGCTCCGGCCGGAGCTGCG CGGACTCGACGGACGCGAGCTGGCCCGGCGGCGGCTTTCCGGGGAGGCCA TCGAGCTCGTGGAGGAGGTGACCGAGGTGGCATACTCGGGAGACACTGAG ATGGCGGCGCTGCTATCCGTGCCGTGCGTCTGGGCGGCGCGGCTGCTCAT GCTCGAGGTGCGTTGCGGGCGGGCGGGCAAAAGAGGTTATATTGATATGG ATGGTCTTCTTCCTTGCATGATACTTGTTCAGAGCAGCTTGAGGAAGCGG CCCGCTGCCGATGGTCGGGACAGGGTATGCGACACTTGGTGAGCTGTCGA CGATGCGGCGATCTTTTCATGGCGGCATTTGCCTCCAACGAAGGCGTGCC GTTAAGTCCTTCCAGGAGGCTTGCAAGCTCCGCTTGCGGCGCTGCTGAAA CCTTGACCTTGACGGGAACCCACATGCTCTGCGCCTGTTCCGCTCTCATT TAAAACGTTGCTTCTGATGCTGCTTTGGCTGCGGCGGCGGCTGCGGTGGC GGTGATGGTGGCAGGTGACGTATCTGGACGGCCCCGAAGACTCCGCCAGA AAATGGCAGCACATCCACCTCAACGACATCGTTGCCTGCATCGGCAGGTG TGCAAGAACGGCCGCTATGGGGCTTAGCTCTTTAATTTGCTTCCGGCTCC ATTCATCGCAACCACCGCCGCTTTGCGTGCTCTATTCACCCTAAATCCTT TAATACCAAGCTAGTTTCCAACCATCTCTGCCCAGCTTTCAAAATGTCGA TCCGTCCAGGCTGGCGCCGATGCAGCAGGTGGTGATTTGCCACATCTCGG ATCGGTACCGCGACGCCGAATCCATCCTCTCGCTGATCGCCGCGGCGCTG CCGCCCGAAGTGTCGGCCCGCGTTGGTGTGGCCTTGCAGCTTTTCGGCCG TCCGGAGGCGGTCACCTCGTTGGCGGCGTTCGCGGCAGGCGGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig673:550..2742+

>mRNA_P-wetherbeei_contig673.1.1 ID=mRNA_P-wetherbeei_contig673.1.1|Name=mRNA_P-wetherbeei_contig673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig673:550..2742+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTCTCCTGAGGACGGTTTCTGCGTAACTGGGGCTTGGACAAAGGC
CGGCATCTCCACGTCCATCCTCGTCCGTCACCGCCACTTTCGGAGGCTCT
GCATTGCTTTCGATATTGGGATTTGTCCGCAGGACATGGCAGCGGCCGAC
TACGTCTTCATCTCGCATGGACATACCGATCACGCTGGAGCTATCTTTAG
CCACGCAAGGTTAAGGTCGCTGAGCAAAGGCGTTGCCAAATACGTGGTGC
CGCCGGATCTGGTGGGGCCACTGGCGGATGCCAAGGACGCCTTCGAGCGG
CTCAACGGGGCGCCCATCCCGATGGATATTATCTCCGTGGGCAGCGGCTG
CGTTGTGCGGCCCTTCGCGACGCAGCACCGCGTTCACAGCCAGGGTTACT
GCCTGGTGCGCGTCGCCCGGCGCGGGCTCCGGCCGGAGCTGCGCGGACTC
GACGGACGCGAGCTGGCCCGGCGGCGGCTTTCCGGGGAGGCCATCGAGCT
CGTGGAGGAGGTGACCGAGGTGGCATACTCGGGAGACACTGAGATGGCGG
CGCTGCTATCCGTGCCGTGCGTCTGGGCGGCGCGGCTGCTCATGCTCGAG
GTGACGTATCTGGACGGCCCCGAAGACTCCGCCAGAAAATGGCAGCACAT
CCACCTCAACGACATCGTTGCCTGCATCGGCAGGCTGGCGCCGATGCAGC
AGGTGGTGATTTGCCACATCTCGGATCGGTACCGCGACGCCGAATCCATC
CTCTCGCTGATCGCCGCGGCGCTGCCGCCCGAAGTGTCGGCCCGCGTTGG
TGTGGCCTTGCAGCTTTTCGGCCGTCCGGAGGCGGTCACCTCGTTGGCGG
CGTTCGCGGCAGGCGGA
back to top