mRNA_P-wetherbeei_contig671.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig671.2.1
Unique NamemRNA_P-wetherbeei_contig671.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig671.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig671contigP-wetherbeei_contig671:4823..5204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size384
Hectar predicted targeting categorysignal anchor
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186931.5103002-UTR-P-wetherbeei_contig671:4822..48411683186931.5103002-UTR-P-wetherbeei_contig671:4822..4841Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig671 4823..4841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186931.5185556-CDS-P-wetherbeei_contig671:4841..52041683186931.5185556-CDS-P-wetherbeei_contig671:4841..5204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig671 4842..5204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig671.2.1prot_P-wetherbeei_contig671.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig671 4842..5204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig671.2.1

>prot_P-wetherbeei_contig671.2.1 ID=prot_P-wetherbeei_contig671.2.1|Name=mRNA_P-wetherbeei_contig671.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
AVAVSGLVGKSIESCCLRQASCRHRTPVCGSFGCSDLSVSVCWFLGGVGC
LLLGRSYARRHRFTSLDTRITPRRYCFFSFGVSLVLVSAARHLVFCLLTA
VYVSRCCRIDDELCVNSRRP*
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mRNA from alignment at P-wetherbeei_contig671:4823..5204-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig671.2.1 ID=mRNA_P-wetherbeei_contig671.2.1|Name=mRNA_P-wetherbeei_contig671.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=382bp|location=Sequence derived from alignment at P-wetherbeei_contig671:4823..5204- (Phaeothamnion wetherbeei SAG_119_79)
GCAGTCGCAGTCAGCGGGCTTGTCGGAAAGAGCATAGAGTCGTGTTGCCT
CCGCCAAGCCAGCTGTCGACACCGTACACCGGTGTGCGGTTCTTTCGGCT
GCTCCGATTTGTCTGTTTCGGTTTGTTGGTTCCTTGGCGGGGTTGGGTGT
CTTCTTTTAGGGCGCAGCTATGCGAGGCGTCACCGTTTCACATCGCTTGA
CACTCGCATCACCCCCCGCCGCTACTGCTTCTTTTCTTTTGGCGTTTCTC
TCGTTCTCGTGTCAGCAGCCCGCCACCTCGTGTTCTGCCTTCTAACCGCC
GTTTATGTGAGCCGCTGCTGTCGTATTGATGACGAACTCTGTGTTAACTC
CCGCCGCCCGTAGGTGAAGGCGACAGCCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig671:4823..5204-

>mRNA_P-wetherbeei_contig671.2.1 ID=mRNA_P-wetherbeei_contig671.2.1|Name=mRNA_P-wetherbeei_contig671.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig671:4823..5204- (Phaeothamnion wetherbeei SAG_119_79)
GCAGTCGCAGTCAGCGGGCTTGTCGGAAAGAGCATAGAGTCGTGTTGCCT
CCGCCAAGCCAGCTGTCGACACCGTACACCGGTGTGCGGTTCTTTCGGCT
GCTCCGATTTGTCTGTTTCGGTTTGTTGGTTCCTTGGCGGGGTTGGGTGT
CTTCTTTTAGGGCGCAGCTATGCGAGGCGTCACCGTTTCACATCGCTTGA
CACTCGCATCACCCCCCGCCGCTACTGCTTCTTTTCTTTTGGCGTTTCTC
TCGTTCTCGTGTCAGCAGCCCGCCACCTCGTGTTCTGCCTTCTAACCGCC
GTTTATGTGAGCCGCTGCTGTCGTATTGATGACGAACTCTGTGTTAACTC
CCGCCGCCCGTAG
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