mRNA_P-wetherbeei_contig6676.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6676.2.1
Unique NamemRNA_P-wetherbeei_contig6676.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6676.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6676contigP-wetherbeei_contig6676:1126..3348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2224
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionF-box, zinc finger protein
Ec32 orthologEc-01_000310.1
Cds size2148
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.177514-UTR-P-wetherbeei_contig6676:1125..12001683186929.177514-UTR-P-wetherbeei_contig6676:1125..1200Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6676 1126..1200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.1866052-CDS-P-wetherbeei_contig6676:1200..33481683186929.1866052-CDS-P-wetherbeei_contig6676:1200..3348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6676 1201..3348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6676.2.1prot_P-wetherbeei_contig6676.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6676 1201..3348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6676.2.1

>prot_P-wetherbeei_contig6676.2.1 ID=prot_P-wetherbeei_contig6676.2.1|Name=mRNA_P-wetherbeei_contig6676.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=716bp
MVASSKSVFLDLIRAFPDDDGHWRSRMAIFLQALASVPATDCTCRESLLF
DVLTTCGRDWSGAVAQQSGVARALCTVLLEDLPLSANGTILRIFLALLAG
KASATRVLLVDAAAKVFAASPSLSGDALRRWIARQLRESACKDGDNDLRS
FTRALLRVVARCRSRLCPIVLPLLMQFAVDSELKALGGEYSGGSGGSCKA
SCDSYGYYIDATMAAYDEGEGSNGEASEPFPSSADPTPQKRHAAAAVNRG
VASEAPEDSVLEVLMRWMIDVGYQQCSRRLSADLEAAVFAGVRQTLLLTP
RLPSSAAILPSAALATTAASPAPAPRAAMPPAAAAEGNAPPVACGLLLTL
LGNLGSDGGSGVAVFLQRECGSALRRLRPRASSPDAAAGRCSILDGSGDG
GAPGSRTTFAAATAAPLAAWNAFHRSLSLFAGFLCQADYLAAPLLCAHLR
WLLRHAVVALRAAESLCPERLYLPLRHAVALVLICRADSLRHELREPATA
DFIAAALGSERRPLGYMGPATLQAALVVLRDAGIIVPSSSGSVVGEGTRR
AELEEVSAASASLDLAAGAAGAFPWSLRLVRSLLRPGPAAAIAAILAKEA
ARARRAAGGGRRGRPGLQHQQLDLVRFPPDVLPTLWSFLGHKRLCRSLCV
SREWRETLAQAALWRGMFLRRWPLVVVPTPPPGRALDVSTVEAAERSVSR
KRRRVVVHWRHYGGGG
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mRNA from alignment at P-wetherbeei_contig6676:1126..3348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6676.2.1 ID=mRNA_P-wetherbeei_contig6676.2.1|Name=mRNA_P-wetherbeei_contig6676.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2223bp|location=Sequence derived from alignment at P-wetherbeei_contig6676:1126..3348+ (Phaeothamnion wetherbeei SAG_119_79)
GCACGGAAGCAATGTGGAGACAAACGAAGGGACCGTTGGTGATTGACCGC
AGGAAAGCAACCGTTAGCAAAAAGGATGGTTGCCTCCTCAAAATCGGTCT
TTCTCGATCTCATTCGCGCCTTTCCTGACGATGATGGGCATTGGAGGAGC
CGCATGGCCATTTTCCTTCAGGCTCTGGCCAGCGTCCCAGCAACGGATTG
TACTTGTCGCGAATCGTTGCTCTTCGACGTGTTGACGACTTGCGGCCGCG
ATTGGAGTGGCGCTGTCGCACAGCAAAGCGGCGTTGCCCGTGCTCTCTGC
ACCGTCCTCCTCGAAGATCTCCCTCTCTCGGCGAACGGGACTATCTTGCG
CATCTTTCTGGCTCTTCTGGCCGGCAAGGCCTCGGCAACGCGAGTTCTCC
TGGTCGACGCGGCAGCAAAAGTGTTTGCAGCCAGTCCCTCACTCTCTGGA
GACGCGCTGAGACGGTGGATTGCGAGGCAGCTGCGGGAATCCGCCTGCAA
GGACGGCGACAACGACCTGCGCTCCTTCACGCGCGCATTGCTTCGGGTGG
TGGCCCGGTGCCGCTCGCGGCTCTGCCCGATCGTCCTGCCGCTGCTCATG
CAGTTTGCGGTCGACTCCGAACTGAAGGCGCTCGGCGGCGAGTATAGCGG
CGGCAGCGGCGGCAGCTGCAAAGCCAGCTGCGACTCTTACGGTTATTACA
TCGATGCGACGATGGCGGCTTATGACGAAGGCGAGGGAAGCAATGGCGAG
GCCTCGGAGCCGTTTCCCTCATCAGCAGACCCGACCCCCCAGAAGCGCCA
CGCAGCTGCCGCTGTGAACCGCGGAGTGGCCTCCGAAGCGCCCGAGGACT
CTGTGCTGGAAGTTCTGATGCGGTGGATGATCGACGTCGGCTACCAGCAG
TGCTCGCGGCGGCTCTCAGCTGACCTGGAGGCCGCCGTCTTCGCCGGCGT
GCGGCAGACGCTGCTCTTGACGCCGCGCCTGCCGTCGTCGGCGGCTATAT
TGCCGTCAGCGGCATTGGCCACCACGGCGGCATCGCCGGCGCCGGCGCCA
AGAGCAGCAATGCCGCCAGCTGCAGCAGCTGAGGGGAACGCGCCGCCGGT
GGCCTGCGGGCTGCTGTTGACGCTTCTGGGCAACCTGGGGAGCGACGGCG
GGTCCGGTGTCGCCGTCTTCTTGCAGCGGGAGTGCGGTTCTGCCCTCCGC
CGCTTGCGGCCGCGGGCGTCGTCGCCGGATGCGGCCGCCGGCAGGTGCAG
CATCCTCGACGGCAGCGGCGATGGAGGAGCACCAGGGTCGCGGACGACTT
TTGCCGCCGCTACCGCTGCGCCTCTCGCCGCGTGGAACGCATTTCACCGC
AGCCTGAGCCTCTTTGCGGGCTTCCTGTGCCAGGCCGACTACCTGGCGGC
ACCGCTGCTGTGTGCACATCTCAGGTGGCTGCTGCGGCACGCGGTGGTGG
CGCTGCGCGCGGCCGAATCGTTGTGTCCGGAGCGGCTCTACCTGCCTCTC
CGCCATGCCGTCGCGCTGGTGTTGATTTGCCGCGCCGACTCCCTCCGCCA
CGAGCTGCGAGAGCCGGCGACAGCGGACTTCATCGCCGCCGCGCTCGGTT
CCGAGCGCCGTCCGCTGGGTTACATGGGACCGGCGACGTTGCAGGCGGCT
TTGGTAGTGCTGAGGGACGCTGGAATCATCGTGCCAAGCAGCAGTGGTTC
TGTAGTTGGGGAGGGAACAAGGAGGGCGGAACTAGAAGAAGTCTCGGCGG
CATCGGCGAGCTTAGACCTCGCCGCCGGCGCGGCTGGCGCCTTCCCGTGG
TCGCTGCGCCTCGTCCGCTCCTTGCTCCGGCCGGGGCCGGCTGCTGCGAT
CGCCGCCATACTGGCGAAAGAGGCGGCGCGGGCGCGGCGGGCCGCAGGCG
GCGGTCGTCGCGGCCGGCCCGGACTGCAGCACCAGCAGCTGGACCTGGTG
CGTTTCCCGCCGGACGTTCTTCCGACCTTGTGGTCCTTTCTGGGCCACAA
GCGGCTGTGCCGCTCCTTGTGTGTCAGCCGCGAGTGGCGCGAGACGCTGG
CGCAGGCGGCCCTCTGGCGCGGCATGTTCCTGCGGCGGTGGCCGCTGGTG
GTGGTGCCGACGCCGCCGCCAGGGCGGGCACTCGACGTCTCCACTGTGGA
GGCGGCGGAGCGGAGCGTCAGCCGGAAGCGCCGAAGGGTGGTTGTCCACT
GGCGCCACTACGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6676:1126..3348+

>mRNA_P-wetherbeei_contig6676.2.1 ID=mRNA_P-wetherbeei_contig6676.2.1|Name=mRNA_P-wetherbeei_contig6676.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2148bp|location=Sequence derived from alignment at P-wetherbeei_contig6676:1126..3348+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGCCTCCTCAAAATCGGTCTTTCTCGATCTCATTCGCGCCTTTCC
TGACGATGATGGGCATTGGAGGAGCCGCATGGCCATTTTCCTTCAGGCTC
TGGCCAGCGTCCCAGCAACGGATTGTACTTGTCGCGAATCGTTGCTCTTC
GACGTGTTGACGACTTGCGGCCGCGATTGGAGTGGCGCTGTCGCACAGCA
AAGCGGCGTTGCCCGTGCTCTCTGCACCGTCCTCCTCGAAGATCTCCCTC
TCTCGGCGAACGGGACTATCTTGCGCATCTTTCTGGCTCTTCTGGCCGGC
AAGGCCTCGGCAACGCGAGTTCTCCTGGTCGACGCGGCAGCAAAAGTGTT
TGCAGCCAGTCCCTCACTCTCTGGAGACGCGCTGAGACGGTGGATTGCGA
GGCAGCTGCGGGAATCCGCCTGCAAGGACGGCGACAACGACCTGCGCTCC
TTCACGCGCGCATTGCTTCGGGTGGTGGCCCGGTGCCGCTCGCGGCTCTG
CCCGATCGTCCTGCCGCTGCTCATGCAGTTTGCGGTCGACTCCGAACTGA
AGGCGCTCGGCGGCGAGTATAGCGGCGGCAGCGGCGGCAGCTGCAAAGCC
AGCTGCGACTCTTACGGTTATTACATCGATGCGACGATGGCGGCTTATGA
CGAAGGCGAGGGAAGCAATGGCGAGGCCTCGGAGCCGTTTCCCTCATCAG
CAGACCCGACCCCCCAGAAGCGCCACGCAGCTGCCGCTGTGAACCGCGGA
GTGGCCTCCGAAGCGCCCGAGGACTCTGTGCTGGAAGTTCTGATGCGGTG
GATGATCGACGTCGGCTACCAGCAGTGCTCGCGGCGGCTCTCAGCTGACC
TGGAGGCCGCCGTCTTCGCCGGCGTGCGGCAGACGCTGCTCTTGACGCCG
CGCCTGCCGTCGTCGGCGGCTATATTGCCGTCAGCGGCATTGGCCACCAC
GGCGGCATCGCCGGCGCCGGCGCCAAGAGCAGCAATGCCGCCAGCTGCAG
CAGCTGAGGGGAACGCGCCGCCGGTGGCCTGCGGGCTGCTGTTGACGCTT
CTGGGCAACCTGGGGAGCGACGGCGGGTCCGGTGTCGCCGTCTTCTTGCA
GCGGGAGTGCGGTTCTGCCCTCCGCCGCTTGCGGCCGCGGGCGTCGTCGC
CGGATGCGGCCGCCGGCAGGTGCAGCATCCTCGACGGCAGCGGCGATGGA
GGAGCACCAGGGTCGCGGACGACTTTTGCCGCCGCTACCGCTGCGCCTCT
CGCCGCGTGGAACGCATTTCACCGCAGCCTGAGCCTCTTTGCGGGCTTCC
TGTGCCAGGCCGACTACCTGGCGGCACCGCTGCTGTGTGCACATCTCAGG
TGGCTGCTGCGGCACGCGGTGGTGGCGCTGCGCGCGGCCGAATCGTTGTG
TCCGGAGCGGCTCTACCTGCCTCTCCGCCATGCCGTCGCGCTGGTGTTGA
TTTGCCGCGCCGACTCCCTCCGCCACGAGCTGCGAGAGCCGGCGACAGCG
GACTTCATCGCCGCCGCGCTCGGTTCCGAGCGCCGTCCGCTGGGTTACAT
GGGACCGGCGACGTTGCAGGCGGCTTTGGTAGTGCTGAGGGACGCTGGAA
TCATCGTGCCAAGCAGCAGTGGTTCTGTAGTTGGGGAGGGAACAAGGAGG
GCGGAACTAGAAGAAGTCTCGGCGGCATCGGCGAGCTTAGACCTCGCCGC
CGGCGCGGCTGGCGCCTTCCCGTGGTCGCTGCGCCTCGTCCGCTCCTTGC
TCCGGCCGGGGCCGGCTGCTGCGATCGCCGCCATACTGGCGAAAGAGGCG
GCGCGGGCGCGGCGGGCCGCAGGCGGCGGTCGTCGCGGCCGGCCCGGACT
GCAGCACCAGCAGCTGGACCTGGTGCGTTTCCCGCCGGACGTTCTTCCGA
CCTTGTGGTCCTTTCTGGGCCACAAGCGGCTGTGCCGCTCCTTGTGTGTC
AGCCGCGAGTGGCGCGAGACGCTGGCGCAGGCGGCCCTCTGGCGCGGCAT
GTTCCTGCGGCGGTGGCCGCTGGTGGTGGTGCCGACGCCGCCGCCAGGGC
GGGCACTCGACGTCTCCACTGTGGAGGCGGCGGAGCGGAGCGTCAGCCGG
AAGCGCCGAAGGGTGGTTGTCCACTGGCGCCACTACGGCGGCGGCGGC
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