mRNA_P-wetherbeei_contig6669.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6669.1.1
Unique NamemRNA_P-wetherbeei_contig6669.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6669contigP-wetherbeei_contig6669:380..984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FW04
Preferred nameCHLH
PFAMsCobN-Mg_chel,DUF3479
Model size607
Max annot lvl2759|Eukaryota
KEGG rclassRC01012
KEGG koko:K03403
KEGG ReactionR03877
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009706,GO:0009941,GO:0010007,GO:0016020,GO:0016851,GO:0016874,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032991,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051002,GO:0051003,GO:1902494
Exons1
Evalue1.72e-05
EggNOG OGsCOG1429@1|root,2QT3B@2759|Eukaryota
EC6.6.1.1
Descriptionligase activity, forming nitrogen-metal bonds
Cds size387
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.787542-UTR-P-wetherbeei_contig6669:379..5971683186928.787542-UTR-P-wetherbeei_contig6669:379..597Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6669 380..597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.8006904-CDS-P-wetherbeei_contig6669:597..9841683186928.8006904-CDS-P-wetherbeei_contig6669:597..984Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6669 598..984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6669.1.1prot_P-wetherbeei_contig6669.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6669 598..984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6669.1.1

>prot_P-wetherbeei_contig6669.1.1 ID=prot_P-wetherbeei_contig6669.1.1|Name=mRNA_P-wetherbeei_contig6669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MRRGNTREGSEDENPEGKDSGKRKSGRERFGKEEIWKRREGFRKRGRNPV
SIRGPSEPLSRSLLHRPPLSPFRPRLTSQPCFPAFFLASSFCVLLSSFSD
RRQTNSVADKDIAEPALLPDKGIWHPVAD
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mRNA from alignment at P-wetherbeei_contig6669:380..984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6669.1.1 ID=mRNA_P-wetherbeei_contig6669.1.1|Name=mRNA_P-wetherbeei_contig6669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=605bp|location=Sequence derived from alignment at P-wetherbeei_contig6669:380..984+ (Phaeothamnion wetherbeei SAG_119_79)
ACTGGCTTGGCGGCTCGCCTGAAAATTTGGAGGCGCTGCTGCTCAACCTG
GCGCGCGAGTACGTGGCTGACGTCCGCGACAAGGCCAGGTGAAGGCTGAA
CGGATGAAACGGAAAGATAGACGGGAAAAGAGAAACTCAGAATTGTGAGA
ATGGAAAATTCAGAAATTGGTAAGTTCAGGGAAAGATAAGAGGGCAAGAG
CAGGAGAGGGCTGAAGCGATGAGACGGGGAAACACGCGTGAGGGTTCGGA
AGACGAAAATCCGGAAGGGAAAGATTCGGGAAAGAGGAAATCCGGAAGAG
AAAGATTCGGGAAAGAGGAAATTTGGAAGAGGAGAGAGGGGTTTCGGAAA
AGGGGAAGGAACCCCGTAAGCATTCGGGGACCGAGTGAACCGCTAAGTCG
CTCACTGCTGCACCGCCCACCTCTCTCTCCATTCCGTCCCCGCCTTACTT
CTCAGCCTTGTTTCCCGGCCTTCTTCCTCGCTTCTTCCTTCTGTGTTCTC
CTCTCGTCTTTCTCCGACCGTCGACAAACAAATAGCGTGGCGGACAAGGA
CATTGCGGAGCCGGCGCTGCTGCCCGACAAGGGCATCTGGCACCCCGTCG
CCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6669:380..984+

>mRNA_P-wetherbeei_contig6669.1.1 ID=mRNA_P-wetherbeei_contig6669.1.1|Name=mRNA_P-wetherbeei_contig6669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig6669:380..984+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGACGGGGAAACACGCGTGAGGGTTCGGAAGACGAAAATCCGGAAGG
GAAAGATTCGGGAAAGAGGAAATCCGGAAGAGAAAGATTCGGGAAAGAGG
AAATTTGGAAGAGGAGAGAGGGGTTTCGGAAAAGGGGAAGGAACCCCGTA
AGCATTCGGGGACCGAGTGAACCGCTAAGTCGCTCACTGCTGCACCGCCC
ACCTCTCTCTCCATTCCGTCCCCGCCTTACTTCTCAGCCTTGTTTCCCGG
CCTTCTTCCTCGCTTCTTCCTTCTGTGTTCTCCTCTCGTCTTTCTCCGAC
CGTCGACAAACAAATAGCGTGGCGGACAAGGACATTGCGGAGCCGGCGCT
GCTGCCCGACAAGGGCATCTGGCACCCCGTCGCCGAC
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