prot_P-wetherbeei_contig6642.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig6642.1.1
Unique Name	prot_P-wetherbeei_contig6642.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	213

Homology

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: A0A067BW87_SAPPC (Nuclear cap-binding protein subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW87_SAPPC)

HSP 1 Score: 174 bits (442), Expect = 2.860e-51
Identity = 84/132 (63.64%), Postives = 98/132 (74.24%), Query Frame = 0

Query:    9 PPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEP 140
            P  + YWDR++YTSLEE   A++ S T+YVGNLSF+T+E QIYELFS VG V  VIMGLDR K TPCGFCFVEYF+   A A  NFV GT LD+RVI+ ELD GFR+GRQYGRG  GGQ R+      DY+P
Sbjct:   13 PKKKEYWDRQTYTSLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRLKKTPCGFCFVEYFNKEHAQACSNFVSGTKLDQRVIRCELDGGFREGRQYGRGTTGGQVRDDRRSKDDYDP 144

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: A0A1W0A133_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A133_9STRA)

HSP 1 Score: 171 bits (432), Expect = 6.650e-50
Identity = 81/132 (61.36%), Postives = 96/132 (72.73%), Query Frame = 0

Query:    9 PPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEP 140
            P  + YWDR++Y SLEE   A++ S T+YVGNLSF+T+E QIYELFS VG V  VIMGLDR K TPCGFCFVEYF+   A A  NF+  T LD+RVI+ ELD GFR+GRQYGRG  GGQ R+      DY+P
Sbjct:   13 PKKKEYWDRQTYASLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRIKKTPCGFCFVEYFNKDHAQACANFISSTKLDQRVIRCELDGGFREGRQYGRGTTGGQVRDDRRSKDDYDP 144

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: A0A4D9D5G1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5G1_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.750e-50
Identity = 73/131 (55.73%), Postives = 100/131 (76.34%), Query Frame = 0

Query:    1 MADLFDYEPPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQ 131
            MA+LFD +P   +YWDRK +T  ++ + +LRG+K VY+GNLSF TTE QIY+ FSK+G + RVIMGL+R    PCGFCF+EYF+   A  ++ F+HGTTLD+R+I+VELD G+   R+YGRG +GGQ R++
Sbjct:    1 MAELFDTDPQPLVYWDRKQFTHFQDQIKSLRGTKVVYIGNLSFQTTEPQIYQAFSKIGIIKRVIMGLNRFTKEPCGFCFIEYFNHQCALDAVAFLHGTTLDDRIIRVELDWGYHPSRRYGRGESGGQVRDE 131

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: F0WMQ1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMQ1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.850e-49
Identity = 84/149 (56.38%), Postives = 105/149 (70.47%), Query Frame = 0

Query:    1 MADLFD--------YEPP-ARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEP 140
            MADL+D        + P   R YWDRK+Y SLEE   A++ S T+Y+GNLSFYT+E Q+ ELFS+VG + RVIMGLDR K TPCGFCFVEY+S  +A A  NF+ GT LD RVI+ E+D GF QGRQ+GRG +GGQ R+      +Y+P
Sbjct:    1 MADLYDEIAEEEEQFLPKNQRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLSGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDRRSKDEYDP 149

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: A0A8K1CR96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR96_PYTOL)

HSP 1 Score: 169 bits (428), Expect = 3.180e-49
Identity = 79/129 (61.24%), Postives = 98/129 (75.97%), Query Frame = 0

Query:   12 RIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEP 140
            R YWDRK+YTS EE   A+  S T+Y+GNLSF+T+E QIYELFS+VG+V RVIMGLDR K TPCGFCFVEY +  +A A  NFV+ T LD RVI+ E+D GF++GRQ+GRG +GGQ R+      DY+P
Sbjct:   22 RKYWDRKTYTSYEEQQRAIASSATLYIGNLSFFTSEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEYNTHEEAVACANFVNETKLDNRVIRCEMDGGFKEGRQFGRGASGGQVRDDRRSRDDYDP 150

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: D8LI70_ECTSI (Nuclear cap-binding protein subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI70_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 4.480e-49
Identity = 82/143 (57.34%), Postives = 103/143 (72.03%), Query Frame = 0

Query:    1 MADLFDYEPPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEPPAR 143
            M ++ D+    R YWDRK+++SLE +  AL+ S T+YVGNLSFYT E+QIY LF +VG V RVIMGLDR K +PCGFCFVEY +  D   +I  + GT LDER+IKV +DPGF+QGRQYGRG +GGQ R++     D   PAR
Sbjct:    1 MTEMLDFGWSERPYWDRKNWSSLEAYKEALKKSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATND---PAR 140

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: A0A024GN20_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN20_9STRA)

HSP 1 Score: 169 bits (428), Expect = 5.220e-49
Identity = 83/149 (55.70%), Postives = 103/149 (69.13%), Query Frame = 0

Query:    1 MADLFD---------YEPPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEP 140
            MADL+D              R YWDRK+Y SLEE   A++ S T+Y+GNLSFYT+E Q+ ELFS+VG + RVIMGLDR K TPCGFCFVEY+S  +A A  NF+ GT LD RVI+ E+D GF QGRQ+GRG +GGQ R+      +Y+P
Sbjct:    1 MADLYDEIAEEEECLLPKYQRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLTGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDRRSKDEYDP 149

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: A0A4P9XRE2_9FUNG (Nuclear cap-binding protein subunit 2 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XRE2_9FUNG)

HSP 1 Score: 166 bits (421), Expect = 1.030e-48
Identity = 80/149 (53.69%), Postives = 102/149 (68.46%), Query Frame = 0

Query:    1 MADLFDYEPPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEPPARIDWDHM 149
            MA L  +      Y D +   S +E +  L  S T+YVGNLSFYTTE QIYE+FSK G++ R+IMGLDR K TPCGFCFVEY++  DA   + +V+GT +DERVI+ +LDPGFR+GRQYGRG +GGQ R++    FD   P R  W H+
Sbjct:    1 MATLVQHLAAPSTYKDHQYKGSQQEWIDLLNQSCTLYVGNLSFYTTEEQIYEIFSKCGEIKRIIMGLDRVKKTPCGFCFVEYYTHEDAVDCMKYVNGTRVDERVIRTDLDPGFREGRQYGRGKSGGQVRDEYRQEFD---PGRGGWGHL 146

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: A0A7S2XYK9_9STRA (Nuclear cap-binding protein subunit 2 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK9_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.280e-48
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 0

Query:    1 MADLFDYEPPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFR 114
            MA+LF  EPP ++YWDR+S+++ ++ +  +  S TVYVGNLSFYTTE Q+ ELFSK+G V RVIMGLDR K TPCGFCFVEY+    A  +INF+HGT+LD+RVIKV+LD GFR
Sbjct:    4 MAELFHNEPPQKVYWDRRSFSTFQDQIDCMTHSNTVYVGNLSFYTTETQVKELFSKIGSVKRVIMGLDRFKKTPCGFCFVEYYRHDHALDAINFIHGTSLDDRVIKVDLDYGFR 117

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BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Match: A0A6G0WTP1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTP1_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.250e-47
Identity = 78/132 (59.09%), Postives = 96/132 (72.73%), Query Frame = 0

Query:    9 PPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQIYELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTLDERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEP 140
            P  + YWDR++Y SLEE   A+R S T+YVGNLSF+T+E QIYELFS VG V  VIMGL++   TPCGFCFVEYF+   A A  NF+ GT LD+RVI+ +LD GF +GRQYGRG +GGQ R+      DY+P
Sbjct:   13 PKKKEYWDRRTYASLEEQQEAIRNSSTLYVGNLSFFTSETQIYELFSVVGPVKAVIMGLNQLTKTPCGFCFVEYFTKEHAQACSNFISGTKLDQRVIRCDLDGGFIEGRQYGRGTSGGQVRDDRRSKEDYDP 144

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig6642.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067BW87_SAPPC	2.860e-51	63.64	Nuclear cap-binding protein subunit 2 n=2 Tax=Sapr...	[more]
A0A1W0A133_9STRA	6.650e-50	61.36	Nuclear cap-binding protein subunit 2 n=1 Tax=Thra...	[more]
A0A4D9D5G1_9STRA	7.750e-50	55.73	Nuclear cap-binding protein subunit 2 n=1 Tax=Nann...	[more]
F0WMQ1_9STRA	2.850e-49	56.38	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A8K1CR96_PYTOL	3.180e-49	61.24	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
D8LI70_ECTSI	4.480e-49	57.34	Nuclear cap-binding protein subunit 2 n=2 Tax=Ecto...	[more]
A0A024GN20_9STRA	5.220e-49	55.70	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A4P9XRE2_9FUNG	1.030e-48	53.69	Nuclear cap-binding protein subunit 2 n=1 Tax=Tham...	[more]
A0A7S2XYK9_9STRA	1.280e-48	63.16	Nuclear cap-binding protein subunit 2 (Fragment) n...	[more]
A0A6G0WTP1_9STRA	1.250e-47	59.09	Nuclear cap-binding protein subunit 2 n=1 Tax=Apha...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 3.1E-19 score: 79.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 167..209 e-value: 9.7E-5 score: 22.1 coord: 36..106 e-value: 4.0E-14 score: 52.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 14.709315
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 147..212 e-value: 2.1E-7 score: 32.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 14..138 e-value: 9.2E-29 score: 102.3
None	No IPR available	PANTHER	PTHR18847:SF0	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2	coord: 148..211 coord: 1..154
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 148..211 coord: 1..154
IPR034148	NCBP2, RNA recognition motif	CDD	cd12240	RRM_NCBP2	coord: 36..113 e-value: 6.83105E-45 score: 142.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..211

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig6642	contig	P-wetherbeei_contig6642:115..1291 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig6642.1.1	mRNA_P-wetherbeei_contig6642.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig6642 100..1506 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig6642.1.1 ID=prot_P-wetherbeei_contig6642.1.1|Name=mRNA_P-wetherbeei_contig6642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
MADLFDYEPPARIYWDRKSYTSLEEHVGALRGSKTVYVGNLSFYTTEAQI
YELFSKVGDVARVIMGLDRHKSTPCGFCFVEYFSGGDATASINFVHGTTL
DERVIKVELDPGFRQGRQYGRGNAGGQPREQIADLFDYEPPARIDWDHMS
HTSLEEYVVALRGSKTVRVGNLSFDMEEAQVYKLFSKVGGVPRVIMGCGH
RKPAPCGFCCVK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR027157	NCBP2
IPR034148	NCBP2_RRM
IPR035979	RBD_domain_sf