mRNA_P-wetherbeei_contig6626.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6626.1.1
Unique NamemRNA_P-wetherbeei_contig6626.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6626.1.1 vs. uniprot
Match: A0A2P6PZR2_ROSCH (Putative transcription factor interactor and regulator CCHC(Zn) family n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PZR2_ROSCH)

HSP 1 Score: 56.6 bits (135), Expect = 2.080e-5
Identity = 50/181 (27.62%), Postives = 80/181 (44.20%), Query Frame = 1 
Query:  832 CRRCNVYGHGMMYCPAGPPKRLNDKNTTFGYSDPTVLVVSYALSAFSEIPLSGGGNASWVVDSGAQAHVTSSASGLSNVRPYRGLVRGIGGGTAAIIALGDLHGTVRNSVGARVHFSLKDVRIAPSAGFSLLSAHRLAAHNGIF-----------ELGDGRTGAARGLLRYPARNQTFPLR 1341
            C+ CN  GH  + C        N  N +F    PT  + + A S  S        +++W++DSGA AH+TS+ S L   + Y+G     G GT   +++  +  +  N+      F+L ++   PSA  +LLS ++    N  +           +L  GRT     L R  + N  +PLR
Sbjct:   78 CQICNRMGHSALDC-------YNRLNLSFEGRVPTKKLSAMAASTSSP------SSSTWLLDSGANAHITSNLSNLQTSKEYQGSDHINGIGTTTGLSISHIGSSTLNTDSHS--FALNNILYCPSASTNLLSIYKFTNDNNCYLLIYPTHFLVKDLTSGRT-----LFRGRSNNGLYPLR 238
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6626.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P6PZR2_ROSCH2.080e-527.62Putative transcription factor interactor and regul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6626contigP-wetherbeei_contig6626:8..1406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3750.XP_008390439.1
PFAMsRVT_2,Retrotran_gag_2
Model size1401
Max annot lvl35493|Streptophyta
KEGG koko:K13459
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.46e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YXJ@33090|Viridiplantae,3GHMT@35493|Streptophyta
DescriptionMitochondrial protein
Cds size1398
COG categoryL
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.320987-CDS-P-wetherbeei_contig6626:7..14051683186926.320987-CDS-P-wetherbeei_contig6626:7..1405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6626 8..1405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6626.1.1prot_P-wetherbeei_contig6626.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6626 8..1405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6626.1.1

>prot_P-wetherbeei_contig6626.1.1 ID=prot_P-wetherbeei_contig6626.1.1|Name=mRNA_P-wetherbeei_contig6626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=466bp
ELQQVALPSDLGAAATADEKAERAAAVKSANERNELCREAERQAAFWLVQ
CIETNDEALSVWDGLTDSEQKSGSVIWAKLKAHFTEQSGAATVKALKRFT
EFALPAEDVPPIVIRASFNTIRRQMISLGCRQNDATELSTLLSALSQSNR
WQSFARRCVETRLTTTDAVFDAMKEAWTPPEPLHALPAYSAASGGGGGGG
GGDCGDSGNGGGSGRGSRGGFHEGRRDHTHPAFSAAAYSGGGRGGGSGRG
RSRRGPRWGPGTPYQTAEEYWDSPDAYCRRCNVYGHGMMYCPAGPPKRLN
DKNTTFGYSDPTVLVVSYALSAFSEIPLSGGGNASWVVDSGAQAHVTSSA
SGLSNVRPYRGLVRGIGGGTAAIIALGDLHGTVRNSVGARVHFSLKDVRI
APSAGFSLLSAHRLAAHNGIFELGDGRTGAARGLLRYPARNQTFPLRRLN
DSVHVLDISLEIPGLH
back to top

mRNA from alignment at P-wetherbeei_contig6626:8..1406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6626.1.1 ID=mRNA_P-wetherbeei_contig6626.1.1|Name=mRNA_P-wetherbeei_contig6626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1399bp|location=Sequence derived from alignment at P-wetherbeei_contig6626:8..1406+ (Phaeothamnion wetherbeei SAG_119_79)
GAACTTCAACAGGTCGCCCTTCCCAGCGACCTCGGAGCTGCCGCGACGGC
GGATGAAAAGGCCGAGCGTGCCGCTGCGGTGAAGTCGGCGAACGAGCGCA
ACGAGCTCTGCCGGGAAGCCGAGCGCCAAGCTGCGTTTTGGCTGGTCCAG
TGCATCGAGACCAACGACGAGGCGCTCTCGGTGTGGGACGGCCTCACCGA
CTCGGAGCAGAAAAGCGGCTCTGTCATCTGGGCTAAGCTCAAGGCGCACT
TCACTGAACAGTCGGGCGCGGCGACCGTCAAGGCATTGAAGCGGTTCACC
GAGTTCGCTCTTCCGGCGGAAGATGTGCCCCCTATCGTCATCCGCGCCTC
TTTCAATACAATCAGACGCCAAATGATTTCCCTCGGCTGCAGGCAGAACG
ACGCAACCGAGTTGTCGACTCTTCTATCTGCGCTTTCCCAGTCCAACCGC
TGGCAGAGCTTCGCCCGCCGCTGTGTTGAGACCAGACTGACGACGACGGA
CGCGGTGTTCGACGCCATGAAGGAAGCATGGACACCGCCGGAGCCGCTGC
ATGCGCTCCCGGCGTACTCGGCGGCGAGCGGTGGCGGCGGCGGCGGCGGC
GGCGGCGATTGTGGGGACAGCGGCAATGGCGGCGGCAGCGGCCGCGGTAG
CCGTGGCGGGTTTCATGAAGGCAGGCGCGATCATACGCACCCGGCCTTCT
CGGCTGCGGCATACAGCGGCGGCGGCAGGGGCGGCGGCAGCGGCCGTGGC
CGCAGCCGCAGAGGACCCCGGTGGGGCCCAGGCACACCGTATCAGACTGC
TGAGGAATACTGGGACAGTCCCGACGCCTATTGCAGACGCTGCAACGTGT
ACGGCCACGGCATGATGTACTGTCCGGCGGGTCCCCCGAAGCGCCTTAAT
GACAAGAACACCACCTTTGGCTACTCAGATCCCACTGTTTTGGTCGTGTC
ATATGCTTTGTCTGCTTTCTCGGAGATTCCGCTCAGCGGCGGCGGCAACG
CTAGCTGGGTCGTCGACTCTGGCGCACAAGCGCACGTCACCAGCTCAGCC
AGCGGTCTCTCAAACGTGCGCCCATACCGTGGCCTGGTTCGAGGCATCGG
CGGCGGCACTGCCGCCATCATCGCCCTCGGCGATCTCCATGGCACCGTCC
GCAATTCTGTCGGCGCTCGCGTACATTTTTCTCTCAAAGATGTGCGGATT
GCTCCGTCTGCCGGCTTCTCGCTGCTGTCGGCGCACCGCCTAGCAGCGCA
CAACGGCATCTTCGAGCTTGGAGACGGTCGCACTGGGGCGGCGCGGGGCC
TGCTCCGTTATCCAGCGCGGAACCAGACATTTCCGCTGCGCCGTCTCAAC
GACAGCGTCCACGTGCTTGATATCTCGCTGGAAATCCCGGGGCTTCACA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6626:8..1406+

>mRNA_P-wetherbeei_contig6626.1.1 ID=mRNA_P-wetherbeei_contig6626.1.1|Name=mRNA_P-wetherbeei_contig6626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1398bp|location=Sequence derived from alignment at P-wetherbeei_contig6626:8..1406+ (Phaeothamnion wetherbeei SAG_119_79)
GAACTTCAACAGGTCGCCCTTCCCAGCGACCTCGGAGCTGCCGCGACGGC
GGATGAAAAGGCCGAGCGTGCCGCTGCGGTGAAGTCGGCGAACGAGCGCA
ACGAGCTCTGCCGGGAAGCCGAGCGCCAAGCTGCGTTTTGGCTGGTCCAG
TGCATCGAGACCAACGACGAGGCGCTCTCGGTGTGGGACGGCCTCACCGA
CTCGGAGCAGAAAAGCGGCTCTGTCATCTGGGCTAAGCTCAAGGCGCACT
TCACTGAACAGTCGGGCGCGGCGACCGTCAAGGCATTGAAGCGGTTCACC
GAGTTCGCTCTTCCGGCGGAAGATGTGCCCCCTATCGTCATCCGCGCCTC
TTTCAATACAATCAGACGCCAAATGATTTCCCTCGGCTGCAGGCAGAACG
ACGCAACCGAGTTGTCGACTCTTCTATCTGCGCTTTCCCAGTCCAACCGC
TGGCAGAGCTTCGCCCGCCGCTGTGTTGAGACCAGACTGACGACGACGGA
CGCGGTGTTCGACGCCATGAAGGAAGCATGGACACCGCCGGAGCCGCTGC
ATGCGCTCCCGGCGTACTCGGCGGCGAGCGGTGGCGGCGGCGGCGGCGGC
GGCGGCGATTGTGGGGACAGCGGCAATGGCGGCGGCAGCGGCCGCGGTAG
CCGTGGCGGGTTTCATGAAGGCAGGCGCGATCATACGCACCCGGCCTTCT
CGGCTGCGGCATACAGCGGCGGCGGCAGGGGCGGCGGCAGCGGCCGTGGC
CGCAGCCGCAGAGGACCCCGGTGGGGCCCAGGCACACCGTATCAGACTGC
TGAGGAATACTGGGACAGTCCCGACGCCTATTGCAGACGCTGCAACGTGT
ACGGCCACGGCATGATGTACTGTCCGGCGGGTCCCCCGAAGCGCCTTAAT
GACAAGAACACCACCTTTGGCTACTCAGATCCCACTGTTTTGGTCGTGTC
ATATGCTTTGTCTGCTTTCTCGGAGATTCCGCTCAGCGGCGGCGGCAACG
CTAGCTGGGTCGTCGACTCTGGCGCACAAGCGCACGTCACCAGCTCAGCC
AGCGGTCTCTCAAACGTGCGCCCATACCGTGGCCTGGTTCGAGGCATCGG
CGGCGGCACTGCCGCCATCATCGCCCTCGGCGATCTCCATGGCACCGTCC
GCAATTCTGTCGGCGCTCGCGTACATTTTTCTCTCAAAGATGTGCGGATT
GCTCCGTCTGCCGGCTTCTCGCTGCTGTCGGCGCACCGCCTAGCAGCGCA
CAACGGCATCTTCGAGCTTGGAGACGGTCGCACTGGGGCGGCGCGGGGCC
TGCTCCGTTATCCAGCGCGGAACCAGACATTTCCGCTGCGCCGTCTCAAC
GACAGCGTCCACGTGCTTGATATCTCGCTGGAAATCCCGGGGCTTCAC
back to top