mRNA_P-wetherbeei_contig6560.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6560.1.1
Unique NamemRNA_P-wetherbeei_contig6560.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: UPI0019A61D57 (SDR family oxidoreductase n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019A61D57)

HSP 1 Score: 387 bits (993), Expect = 6.960e-134
Identity = 198/252 (78.57%), Postives = 219/252 (86.90%), Query Frame = 1
Query:   19 SLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            SLFDL+G+VAIVTGSTRGIGKS+AEEL RAGA+V+ISSRKA+ACEA RAE    GL VLAQPCNV RKEE+ ALV+A    WGRVDI + NAA+NPYYGPL  +PD+ FDKV  +NVKS LWLA+L  PGMA RGGGS I VGSI G+ ANT+IGAYG+SKAADH LV+NLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDK RA REAATPLRR+G PRDIGGIAVFLAS+AAAFMTGQ IVADGGVTI+
Sbjct:    4 SLFDLSGKVAIVTGSTRGIGKSMAEELARAGARVVISSRKAEACEAVRAEFEAQGLEVLAQPCNVSRKEELKALVDAAVAKWGRVDIAIANAAVNPYYGPLTEIPDDAFDKVFLNNVKSVLWLASLTLPGMAGRGGGSFITVGSIGGIIANTVIGAYGMSKAADHHLVRNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKRRAEREAATPLRRLGVPRDIGGIAVFLASEAAAFMTGQVIVADGGVTIL 255          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A521W201_9PROT (SDR family oxidoreductase n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521W201_9PROT)

HSP 1 Score: 375 bits (963), Expect = 2.570e-129
Identity = 186/252 (73.81%), Postives = 215/252 (85.32%), Query Frame = 1
Query:   19 SLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            +LFDL+G+VA+VTGST+GIGKS AEE+ RAGA+V+ISSRKA AC+A RAE A  G   +A+PCNV RKEE+ ALVE T   WGR+DI+V NAA NPYYGPL GLPD+TFDKVM +NVKS LWLANL  PGMAERGGGS +++GSIAGL ANT+IG YGISKAAD  LV+NLAAEWGPKNVRVNAIAPGL+KTDFA+ALWEDD+ R  REA TPLRR+GE R+IGGI  FLAS AA+F+TGQ +VADGGVTIV
Sbjct:    4 TLFDLSGKVALVTGSTKGIGKSAAEEMARAGARVVISSRKAQACDAVRAEFAAQGWPAIARPCNVSRKEELQALVELTLATWGRIDIVVANAAANPYYGPLSGLPDDTFDKVMLNNVKSTLWLANLTLPGMAERGGGSFVVIGSIAGLLANTVIGIYGISKAADFQLVRNLAAEWGPKNVRVNAIAPGLIKTDFARALWEDDRRRKEREALTPLRRLGEAREIGGIVAFLASDAASFITGQTLVADGGVTIV 255          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A0S8B279_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B279_9PROT)

HSP 1 Score: 373 bits (957), Expect = 2.100e-128
Identity = 186/258 (72.09%), Postives = 221/258 (85.66%), Query Frame = 1
Query:    1 MPSPTPSLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            MPS   +LFDL+GQVA+VTGST+GIGKSIA+EL RAGAKV+ISSRKA+ACEA RAE    GLT +A+PCNV RK+EV ALVE +   WG++DI+VCNAA+NPYYGPL  LPDETF KVM++N++S++WL+ LVAPGMAERGGG II+VGSI G+     +G YG+SKAADH L +NLA EWGPKNVRVNAIAPGL+KTDFA+ALWED+KLR +REA TPLRRIG P +IGGIAVFLAS+A +F+TGQ IVADGGVTIV
Sbjct:    1 MPS---TLFDLSGQVALVTGSTKGIGKSIAQELARAGAKVVISSRKAEACEAVRAEFEREGLTAIAKPCNVSRKDEVQALVEHSLSTWGKIDILVCNAAVNPYYGPLAKLPDETFSKVMAANLQSSIWLSALVAPGMAERGGGCIILVGSIGGILGTGTLGIYGMSKAADHALARNLAVEWGPKNVRVNAIAPGLIKTDFARALWEDEKLRTSREATTPLRRIGAPEEIGGIAVFLASKAGSFITGQTIVADGGVTIV 255          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A536ST47_9PROT (SDR family oxidoreductase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ST47_9PROT)

HSP 1 Score: 369 bits (947), Expect = 6.990e-127
Identity = 188/254 (74.02%), Postives = 212/254 (83.46%), Query Frame = 1
Query:   13 TPSLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            T SLFDL G+VA+VTGSTRGIG+SIAEEL RAGA V +SSRKADACEA RAE    G  VLA+PCNV RKEE+ ALV+ T   WG +DI+V NAA NPYYGPL  + D+ FDK++ +NVKS LWLA +  P MAERGGGS  +VGSI GL ANT+IGAYGISKAA H LV+NLAAEWGPKNVRVNAIAPGLVKTDFA+ALWED+  RA R AATPLRR+GEPRDIGGIAVFLAS AAAF+TGQCIVADGGV+I+
Sbjct:    2 TSSLFDLRGKVALVTGSTRGIGRSIAEELARAGAAVAVSSRKADACEAVRAEFERAGFAVLARPCNVSRKEELQALVDTTRGKWGHIDIVVANAAANPYYGPLTDISDDAFDKIIGNNVKSALWLAAMTLPQMAERGGGSFTLVGSIGGLLANTVIGAYGISKAAGHHLVRNLAAEWGPKNVRVNAIAPGLVKTDFARALWEDEARRAERLAATPLRRLGEPRDIGGIAVFLASDAAAFITGQCIVADGGVSIL 255          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A1F4AUC5_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4AUC5_9PROT)

HSP 1 Score: 365 bits (938), Expect = 1.700e-125
Identity = 180/252 (71.43%), Postives = 212/252 (84.13%), Query Frame = 1
Query:   19 SLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            SLFDL+G+VA+VTGST+GIGKS AEE+ RAGA+V++SSRK DACEA R E    G  V+A+PCN+ RKE++ +LVE T + WGR+D++V NAA NPYYGPL  LPDETFDKVM +NVKS LWLANL  PGMA RGGGS I+V SIAG+ ANT+IG YGISKAAD  LV+NLAAEWGPKNVRVNAIAPGL+KTDFA+ALWED+K R  REA TP+RR+GE R+IGG+A FLAS AA+F+TGQ IV DGGVTIV
Sbjct:    5 SLFDLSGKVALVTGSTKGIGKSAAEEMARAGARVVVSSRKGDACEAVRREFEAQGWPVIARPCNISRKEDLQSLVELTLETWGRIDVVVANAAANPYYGPLQALPDETFDKVMLNNVKSTLWLANLTLPGMAARGGGSFIVVASIAGMLANTVIGIYGISKAADLQLVRNLAAEWGPKNVRVNAIAPGLIKTDFARALWEDEKRRTEREALTPMRRLGEAREIGGVAAFLASDAASFITGQTIVVDGGVTIV 256          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A1F4EII3_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4EII3_9PROT)

HSP 1 Score: 365 bits (937), Expect = 2.410e-125
Identity = 183/252 (72.62%), Postives = 212/252 (84.13%), Query Frame = 1
Query:   19 SLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            S FDL G+VA+VTGSTRGIGKSIAEELGRAGAKV ISSRK +ACE  RAEL   G+ V+A+PCNV RKE++ ALV+AT   WG +DI+V NAA NPYYGPL  +PD+ FDK++ +NVKS LWLA +   GMA RGGGS I+VGS+ G+ ANT+IGAYG+SKAA H LV+NLAAEWGPKNVRVNAIAPGLVKT+FA+ALWED+   A R  ATPLRR+GEPRDIGGIAVFLAS AAAF+TGQCIVADGGVTI+
Sbjct:    5 SPFDLRGKVALVTGSTRGIGKSIAEELGRAGAKVSISSRKPEACEQARAELEQNGVEVVARPCNVSRKEDLQALVDATRDRWGAIDIVVSNAASNPYYGPLASIPDDAFDKILGNNVKSVLWLAGMTLEGMASRGGGSFILVGSVGGILANTVIGAYGVSKAASHHLVRNLAAEWGPKNVRVNAIAPGLVKTEFARALWEDEARAAERIRATPLRRLGEPRDIGGIAVFLASDAAAFITGQCIVADGGVTIL 256          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A1F4CWI1_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CWI1_9PROT)

HSP 1 Score: 361 bits (926), Expect = 9.880e-124
Identity = 185/251 (73.71%), Postives = 211/251 (84.06%), Query Frame = 1
Query:   22 LFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            LFDL G+VA+VTGSTRGIGKSIAE+L  AGAKV +SSRKA+ACE  R E    G  VLA+PCNV RKEE+ ALV+AT + WGR+DI+V NAA NPYYGPL  +PDE FDK+ ++NVKS LWLA +  PGM +  GGS I+VGSI GL ANT+IGAYGISKAADH LV+NLAAEWGPKNVRVNAIAPGLVKT+FA+ALWED+K R  R  ATPLRR+GEPRDIGGIAVFLAS AAAF+TGQCIVADGGVTI+
Sbjct:    4 LFDLGGKVALVTGSTRGIGKSIAEQLALAGAKVAVSSRKAEACEEVRKEFQSNGFEVLARPCNVSRKEELQALVDATLEKWGRIDIVVANAASNPYYGPLTAIPDEAFDKIFANNVKSVLWLAAMTLPGMTK--GGSFIVVGSIGGLIANTVIGAYGISKAADHHLVRNLAAEWGPKNVRVNAIAPGLVKTEFARALWEDEKRRNERIQATPLRRLGEPRDIGGIAVFLASDAAAFITGQCIVADGGVTIL 252          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A537DJR3_9PROT (SDR family oxidoreductase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537DJR3_9PROT)

HSP 1 Score: 361 bits (926), Expect = 1.060e-123
Identity = 180/252 (71.43%), Postives = 210/252 (83.33%), Query Frame = 1
Query:   19 SLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            SLFDL G+VA+VTG+TRGIGKSIAEEL RAGA++ + SRKA+ACE  R      G  VLA+ CNV R+EE+ ALV+ T   WG +DI+V NAA+NPYYGPL G+PDE FDK++++NVKS LWLA +  PGMAERGGGS I+VGSI GL ANT+IGAYGISKAADH LV+NLAAEWGPK +RVNAIAPGLVKT+FA+ALWED+K R  R  ATPLRR+GEP DIGGIAVFLAS AAAF+TGQCIVADGG TI+
Sbjct:    3 SLFDLNGKVALVTGATRGIGKSIAEELARAGARIALCSRKAEACEEVRKGFESKGFEVLARSCNVARREELQALVDETLAKWGGIDIVVANAAVNPYYGPLTGIPDEAFDKILATNVKSVLWLAGMTLPGMAERGGGSFIVVGSIGGLIANTVIGAYGISKAADHHLVRNLAAEWGPKGIRVNAIAPGLVKTEFARALWEDEKRRNERIQATPLRRLGEPSDIGGIAVFLASDAAAFITGQCIVADGGFTIL 254          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A521YPR4_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YPR4_9PROT)

HSP 1 Score: 360 bits (924), Expect = 2.290e-123
Identity = 182/252 (72.22%), Postives = 210/252 (83.33%), Query Frame = 1
Query:   19 SLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            SLFDL G+VA+VTGSTRGIG+SIAEELGRAGAKV +SSRK  ACE  R +L   G+ V+A+PCNV RKEE+ ALV+AT + WG +DI+V NAA NPYYG L  + DE FDK MS+NVKS LWLA +    MA RGGGS I+VGS+ GL ANT+IGAYG+SKAA H LV+NLAAEWGP+NVRVNAIAPGLVKTDFA+ALWED+   A R  ATPLRR+GEPRDIGGIAVFLAS+AAAF+TGQCIVADGGVTI+
Sbjct:    5 SLFDLRGKVALVTGSTRGIGRSIAEELGRAGAKVSLSSRKKPACEEARLDLEQQGIEVIARPCNVSRKEELQALVDATRERWGAIDIVVSNAASNPYYGALASISDEAFDKTMSNNVKSALWLAGMTLEHMASRGGGSFILVGSVGGLVANTVIGAYGVSKAAAHHLVRNLAAEWGPRNVRVNAIAPGLVKTDFARALWEDEARAAERIRATPLRRLGEPRDIGGIAVFLASEAAAFITGQCIVADGGVTIL 256          
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Match: A0A537A826_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A826_9PROT)

HSP 1 Score: 360 bits (923), Expect = 3.610e-123
Identity = 186/256 (72.66%), Postives = 212/256 (82.81%), Query Frame = 1
Query:   22 LFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADACEATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAINPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERG-----GGSIIMVGSIAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDFAKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIVADGGVTIV 774
            LFDLTG+VA+VTGSTRGIGKSIAEEL RAGA V ISSRKADACE  RAELA  G  +LA+PCN+ RKEE+ ALV+AT   W R+DI+V NAA NPYYGPL G+ DE FDK++++NVKS LWLA +  PG+AER       GS  +VGSI GL ANT+IGAYG+SKA  H LV+NLAAEWGPKNVRVNAIAPGLVKT+FA+ALWED+K RA R  ATPLRR+GEPRDIGGIAVFLAS AAAF+TGQ IVADGGVTI+
Sbjct:    4 LFDLTGKVALVTGSTRGIGKSIAEELARAGASVAISSRKADACEKARAELAAQGFDILARPCNISRKEELQALVDATLAKWRRLDIVVANAAANPYYGPLTGISDEAFDKIITNNVKSVLWLAAMTLPGIAERAQREGTSGSFTLVGSIGGLLANTVIGAYGMSKATGHHLVRNLAAEWGPKNVRVNAIAPGLVKTEFARALWEDEKRRAERIEATPLRRLGEPRDIGGIAVFLASDAAAFITGQVIVADGGVTIL 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6560.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019A61D576.960e-13478.57SDR family oxidoreductase n=1 Tax=Candidatus Parcu... [more]
A0A521W201_9PROT2.570e-12973.81SDR family oxidoreductase n=3 Tax=unclassified Bet... [more]
A0A0S8B279_9PROT2.100e-12872.09Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A536ST47_9PROT6.990e-12774.02SDR family oxidoreductase n=2 Tax=Betaproteobacter... [more]
A0A1F4AUC5_9PROT1.700e-12571.43Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A1F4EII3_9PROT2.410e-12572.62Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A1F4CWI1_9PROT9.880e-12473.71Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A537DJR3_9PROT1.060e-12371.43SDR family oxidoreductase n=2 Tax=Betaproteobacter... [more]
A0A521YPR4_9PROT2.290e-12372.22SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A537A826_9PROT3.610e-12372.66SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6560contigP-wetherbeei_contig6560:112..888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123060.JONP01000007_gene5121
PFAMsadh_short_C2
Model size777
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.93e-110
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MWGC@1224|Proteobacteria,2TSNX@28211|Alphaproteobacteria,2JRKC@204441|Rhodospirillales
DescriptionKR domain
Cds size777
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.1439579-CDS-P-wetherbeei_contig6560:111..8881683186922.1439579-CDS-P-wetherbeei_contig6560:111..888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6560 112..888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6560.1.1prot_P-wetherbeei_contig6560.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6560 112..888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6560.1.1

>prot_P-wetherbeei_contig6560.1.1 ID=prot_P-wetherbeei_contig6560.1.1|Name=mRNA_P-wetherbeei_contig6560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MPSPTPSLFDLTGQVAIVTGSTRGIGKSIAEELGRAGAKVMISSRKADAC
EATRAELAGMGLTVLAQPCNVGRKEEVTALVEATDKAWGRVDIMVCNAAI
NPYYGPLGGLPDETFDKVMSSNVKSNLWLANLVAPGMAERGGGSIIMVGS
IAGLKANTIIGAYGISKAADHMLVKNLAAEWGPKNVRVNAIAPGLVKTDF
AKALWEDDKLRAAREAATPLRRIGEPRDIGGIAVFLASQAAAFMTGQCIV
ADGGVTIV*
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mRNA from alignment at P-wetherbeei_contig6560:112..888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6560.1.1 ID=mRNA_P-wetherbeei_contig6560.1.1|Name=mRNA_P-wetherbeei_contig6560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig6560:112..888+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCCCCCACGCCTTCCCTGTTCGACCTCACCGGCCAGGTGGCCAT CGTCACCGGCTCCACGCGCGGCATCGGCAAGTCCATCGCCGAGGAGCTGG GGCGCGCCGGCGCGAAGGTCATGATCTCGAGCCGCAAGGCCGACGCCTGC GAAGCCACCCGCGCCGAGCTCGCCGGCATGGGGCTCACTGTGCTGGCCCA GCCGTGCAACGTGGGCAGGAAGGAAGAGGTGACCGCGCTGGTCGAGGCGA CCGACAAGGCCTGGGGCCGCGTCGACATCATGGTCTGCAACGCGGCGATC AACCCCTACTACGGGCCGCTGGGCGGGCTGCCCGACGAGACTTTCGACAA GGTGATGAGCTCCAACGTGAAGTCCAACCTGTGGCTGGCCAACCTCGTCG CCCCCGGCATGGCGGAGCGCGGTGGCGGCAGCATCATCATGGTCGGCTCG ATCGCCGGCCTGAAGGCCAACACCATCATCGGCGCCTACGGCATCTCGAA GGCCGCCGACCACATGCTGGTCAAGAATCTCGCCGCCGAGTGGGGCCCGA AGAACGTGCGCGTGAACGCGATCGCGCCGGGGCTGGTGAAGACCGACTTC GCCAAGGCGCTGTGGGAGGACGACAAGCTGAGGGCGGCGCGCGAGGCGGC CACGCCGTTGCGGCGCATCGGCGAGCCGCGGGACATCGGCGGCATCGCCG TGTTCCTCGCGTCGCAAGCGGCGGCGTTCATGACCGGGCAGTGCATCGTC GCCGACGGCGGCGTGACGATCGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6560:112..888+

>mRNA_P-wetherbeei_contig6560.1.1 ID=mRNA_P-wetherbeei_contig6560.1.1|Name=mRNA_P-wetherbeei_contig6560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig6560:112..888+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCCCCCACGCCTTCCCTGTTCGACCTCACCGGCCAGGTGGCCAT
CGTCACCGGCTCCACGCGCGGCATCGGCAAGTCCATCGCCGAGGAGCTGG
GGCGCGCCGGCGCGAAGGTCATGATCTCGAGCCGCAAGGCCGACGCCTGC
GAAGCCACCCGCGCCGAGCTCGCCGGCATGGGGCTCACTGTGCTGGCCCA
GCCGTGCAACGTGGGCAGGAAGGAAGAGGTGACCGCGCTGGTCGAGGCGA
CCGACAAGGCCTGGGGCCGCGTCGACATCATGGTCTGCAACGCGGCGATC
AACCCCTACTACGGGCCGCTGGGCGGGCTGCCCGACGAGACTTTCGACAA
GGTGATGAGCTCCAACGTGAAGTCCAACCTGTGGCTGGCCAACCTCGTCG
CCCCCGGCATGGCGGAGCGCGGTGGCGGCAGCATCATCATGGTCGGCTCG
ATCGCCGGCCTGAAGGCCAACACCATCATCGGCGCCTACGGCATCTCGAA
GGCCGCCGACCACATGCTGGTCAAGAATCTCGCCGCCGAGTGGGGCCCGA
AGAACGTGCGCGTGAACGCGATCGCGCCGGGGCTGGTGAAGACCGACTTC
GCCAAGGCGCTGTGGGAGGACGACAAGCTGAGGGCGGCGCGCGAGGCGGC
CACGCCGTTGCGGCGCATCGGCGAGCCGCGGGACATCGGCGGCATCGCCG
TGTTCCTCGCGTCGCAAGCGGCGGCGTTCATGACCGGGCAGTGCATCGTC
GCCGACGGCGGCGTGACGATCGTCTGA
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