mRNA_P-wetherbeei_contig6532.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6532.1.1
Unique NamemRNA_P-wetherbeei_contig6532.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6532.1.1 vs. uniprot
Match: A0A8J5XGA5_DIALT (Protein kinase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XGA5_DIALT)

HSP 1 Score: 64.7 bits (156), Expect = 1.480e-7
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 1 
Query:  511 LSDMSASRRKLNMSAVGTRAFASPEMLLVDRSTGRYKAMAEYGL----NVDEYALGSMLRYMLTGCPPDRTVADFKAG-RSGFCSLCM----GMVPPPI---KYLTEVSSEARDLCLALCDRNPDTRLGLSMALLHPWV 891
            ++D   SR        G+RA++ PE+L   R     +      +     VD YALG++LR +LTG PPD+ VA + A  RS  C +        V  P+   +YL+E+ +EA ++   L D NP TR+ +      PWV
Sbjct:  266 MTDPDPSRNSFIAIPAGSRAYSPPEVLDPHRFRADKRVPGRMVVPMTPTVDAYALGALLRQLLTGVPPDQNVAHWIAQQRSSPCEMAARVLRAFVGKPVVHMRYLSELPAEAIEVLNGLMDPNPGTRMTVHQLGATPWV 404
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BLAST of mRNA_P-wetherbeei_contig6532.1.1 vs. uniprot
Match: K0RF80_THAOC (Protein kinase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RF80_THAOC)

HSP 1 Score: 64.3 bits (155), Expect = 2.010e-7
Identity = 53/177 (29.94%), Postives = 82/177 (46.33%), Query Frame = 1 
Query:  442 SGRSSRRWSKSQRTVNTGSKAMMLSDMSASRRKLN----------MSAVGTRAFASPEMLLVDRSTGRYKA----MAEYGLNVDEYALGSMLRYMLTGCPPDRTVADFKAGRSGF----------CSLCMGMVPPPIKYLTEVSSEARDLCLALCDRNPDTRLGLSMALLHPWVLRG 900
            S  S+R  SK   T NT SK++  + +S S  K            MSA+G+RAFA+PE+  V + +    A    +++YGL VD +++G+ +R +LTG P D +  D+   +             C    G      K+L EV  +AR L   L   N   R+ + +A    W+  G
Sbjct:  257 SNHSNRSESKRISTRNTLSKSVSSTKLSQSPLKTTASIEHKPMRAMSALGSRAFAAPEVKKVRKKSDGENAGTEMVSDYGLIVDAFSIGATVRVLLTGVPADSSEMDYIGSQDNLLINIARFLFSCGKGGGKRRRRFKFLNEVPKQARGLVTKLMKANCAERISVPLAREEDWIKGG 433
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BLAST of mRNA_P-wetherbeei_contig6532.1.1 vs. uniprot
Match: A0A1E7EXG8_9STRA (Kinase-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXG8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.640e-7
Identity = 39/136 (28.68%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:  544 NMSAVGTRAFASPEML----------LVDRSTGRYKAMAEYGLNVDEYALGSMLRYMLTGCPPDRTVADFKAGRSG-------FCSLCMGMVPPP---IKYLTEVSSEARDLCLALCDRNPDTRLGLSMALLHPWV 891
            +MSA+GT+A+A+PE+           L   +    + +A+YG+ VD Y++G  LR +LTG PP++T++ +     G       F  +       P   ++   E+  EA     +L  ++P+ R+ +  A LHPW+
Sbjct:  237 SMSALGTKAYAAPEIKHQLRNKTAADLEKTNAALTECVADYGMIVDAYSVGWTLRVILTGVPPNQTISKYMRKYHGQEPSVEIFDEVSTKSKEKPSFRVRDTDEMPQEATLFISSLTKKDPEERMSIRQAQLHPWI 372
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BLAST of mRNA_P-wetherbeei_contig6532.1.1 vs. uniprot
Match: A0A1Z5KDM0_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDM0_FISSO)

HSP 1 Score: 63.5 bits (153), Expect = 3.840e-7
Identity = 41/146 (28.08%), Postives = 73/146 (50.00%), Query Frame = 1 
Query:  544 NMSAVGTRAFASPEMLL-----VDRSTGRYKA-----MAEYGLNVDEYALGSMLRYMLTGCPPDRTVADFKAGRS---------------GFCSLCMGMVPPPIKYL--TEVSSEARDLCLALCDRNPDTRLGLSMALLHPWVLRG 900
            +MSA+GT+A+A+PE+        +   G+  A     +A+YG+ VD Y++G  LR  +TG PP+ T++++   R                G C    G   P +K    +++  EA  L  ++ ++ P+ R+ +  A LHP++  G
Sbjct:  326 SMSALGTKAYAAPEIRKKLRHKTEEDLGKENAALTECVADYGMIVDAYSVGWTLRVAITGVPPNFTLSEYMKERESVVLDSQEEEELVSLGCCCFFSGAAQPLVKVRDPSQIPREAMLLITSMTEKKPEDRMTVREAQLHPYIAGG 471
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BLAST of mRNA_P-wetherbeei_contig6532.1.1 vs. uniprot
Match: A0A7S1D0G1_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0G1_CYCTE)

HSP 1 Score: 62.4 bits (150), Expect = 9.180e-7
Identity = 49/153 (32.03%), Postives = 80/153 (52.29%), Query Frame = 1 
Query:  523 SASRRKL-NMSAVGTRAFASPEMLL---------VDRSTGRY-KAMAEYGLNVDEYALGSMLRYMLTGCPPDRTVADFKA---------GRSGFCSLCMGMVPPP----IKYLTEVSSEARDLCLALCDRNPDTRLGLSMALLHPWVLRGNFG 909
            S +R KL +MSA+GT+A+A+PE+           +DRS     + +A+YG+ VD Y++G  LR +LTG PP+ T++ + +         G SG C  C    P P    ++ ++E+  +A  L   L    P+ R+ +  A  H ++ RG  G
Sbjct:  337 STARTKLRSMSALGTKAYAAPEIKHDLRNKTQDDIDRSKEALTECVADYGMIVDAYSVGWTLRVVLTGIPPNVTISQYMSKITAAQEVVGDSG-CMCCKAAPPKPRQVKVRDISELPKDATLLISYLTKTKPEERMTVREAQNHAYI-RGKKG 487
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BLAST of mRNA_P-wetherbeei_contig6532.1.1 vs. uniprot
Match: A0A7S3L5J3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5J3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.660e-6
Identity = 44/151 (29.14%), Postives = 74/151 (49.01%), Query Frame = 1 
Query:  514 SDMSASRRK-LNMSAVGTRAFASPEML----------LVDRSTGRYKAMAEYGLNVDEYALGSMLRYMLTGCPPDRTVADFKAGRSGF------------CSLCMGMVPPPIKYL--TEVSSEARDLCLALCDRNPDTRLGLSMALLHPWV 891
            SD   SR K L+MSA+GT+A+A+PE+           L   +    + +A+YG+ VD Y++G  LR  +TG PP+ T++++   R               C    G   P +K    + +  EA  L   + ++ P+ R+ +  A LHP++
Sbjct:  319 SDRRTSRAKVLSMSALGTKAYAAPEIRKKLRQKTDEDLEKANAAMTECVADYGMIVDAYSVGWTLRVSMTGVPPNFTLSEYMKERDSVVLEGEEEELAETCCCMKGDFRPFVKVREPSMLPYEATLLVANMTEKKPELRMTVREAQLHPYI 469
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BLAST of mRNA_P-wetherbeei_contig6532.1.1 vs. uniprot
Match: A0A7S3VGU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGU4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.340e-5
Identity = 42/146 (28.77%), Postives = 68/146 (46.58%), Query Frame = 1 
Query:  535 RKLNMSAVGTRAFASPEMLLVDRSTGRYKAMAE-----------YGLNVDEYALGSMLRYMLTGCPPDRTVADFKAGRSGFCSLCMGMVPPPI-----------KYLTEVSSEARDLCLALCDRNPDTRLGLSMALLHPWVLRGNF 906
            R L+MSAVG R +A+PE+L   R+    K  A+           YG+  D Y++GS +RYM+ G PP+ ++ DF A ++ F ++    +   +           +    +  EA  L L L   N   R  +  A    W+ +G+F
Sbjct:  292 RILDMSAVGHRNYAAPEVLKGVRNFAFKKKSAQNKQPLTECVSDYGMIADAYSVGSTIRYMVCGVPPEYSINDFLAEKNSFMNVISRKLKAKVGKDKKKRKKNYRRTKNLPKEASRLVLGLTHWNEKKRTTIRSARNFQWI-KGSF 436
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6532.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A8J5XGA5_DIALT1.480e-733.09Protein kinase domain-containing protein n=1 Tax=D... [more]
K0RF80_THAOC2.010e-729.94Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A1E7EXG8_9STRA2.640e-728.68Kinase-like protein (Fragment) n=1 Tax=Fragilariop... [more]
A0A1Z5KDM0_FISSO3.840e-728.08Protein kinase domain-containing protein n=2 Tax=F... [more]
A0A7S1D0G1_CYCTE9.180e-732.03Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3L5J3_9STRA3.660e-629.14Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S3VGU4_9STRA2.340e-528.77Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6532contigP-wetherbeei_contig6532:1232..3404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0RF80
PFAMsPkinase
Model size1347
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.29e-08
EggNOG OGsKOG4717@1|root,KOG4717@2759|Eukaryota,2XEEF@2836|Bacillariophyta
DescriptionProtein kinase domain
Cds size1347
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186920.373939-CDS-P-wetherbeei_contig6532:1231..17981683186920.373939-CDS-P-wetherbeei_contig6532:1231..1798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6532 1232..1798 +
1683186920.384172-CDS-P-wetherbeei_contig6532:2099..22241683186920.384172-CDS-P-wetherbeei_contig6532:2099..2224Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6532 2100..2224 +
1683186920.3969815-CDS-P-wetherbeei_contig6532:2511..26141683186920.3969815-CDS-P-wetherbeei_contig6532:2511..2614Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6532 2512..2614 +
1683186920.4103725-CDS-P-wetherbeei_contig6532:2852..34041683186920.4103725-CDS-P-wetherbeei_contig6532:2852..3404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6532 2853..3404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6532.1.1prot_P-wetherbeei_contig6532.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6532 1232..3404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6532.1.1

>prot_P-wetherbeei_contig6532.1.1 ID=prot_P-wetherbeei_contig6532.1.1|Name=mRNA_P-wetherbeei_contig6532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=449bp
AVAGDEAAPRRRPSLIRRLASRGRAGSKDGSLLDDGSKSRHGAAGGGGSM
DGSKTGSIGGGGGGVDISGLVTGYVSRATSGSGDFGGGLDVSGLGAVTTV
DAVIDKGDSLAALASNGSGGGGAGSGGLSASGKGGGGGAFRVSRWGTSGR
SSRRWSKSQRTVNTGSKAMMLSDMSASRRKLNMSAVGTRAFASPEMLLVD
RSTGRYKAMAEYGLNVDEYALGSMLRYMLTGCPPDRTVADFKAGRSGFCS
LCMGMVPPPIKYLTEVSSEARDLCLALCDRNPDTRLGLSMALLHPWVLRG
NFGPLDAWVDGPRDGLEAAGAPPSVLAPAAAAVYREEAVAGGVVVFGGAF
DGEGGTEDAKEPGDGGGGGGGGGGKMDGESVSMLPSAGLRLPQLAEVSSI
ASSLREGSIIGVTTAAAAAAAAAVAATPAVVAIAPGAVTPQAAGKAGGT
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mRNA from alignment at P-wetherbeei_contig6532:1232..3404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6532.1.1 ID=mRNA_P-wetherbeei_contig6532.1.1|Name=mRNA_P-wetherbeei_contig6532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2173bp|location=Sequence derived from alignment at P-wetherbeei_contig6532:1232..3404+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGTAGCGGGGGACGAGGCGGCGCCGCGGCGGCGGCCGTCCCTGATCCG
CCGGCTGGCGTCGCGCGGCCGCGCCGGCAGCAAGGACGGGTCGCTGCTCG
ACGACGGCAGCAAGAGCCGCCACGGCGCCGCCGGCGGTGGCGGCAGTATG
GACGGCAGCAAGACGGGGAGCATCGGCGGCGGGGGCGGCGGCGTCGACAT
CAGCGGGCTTGTGACGGGCTACGTGAGCAGGGCGACCAGCGGCAGCGGCG
ATTTCGGCGGCGGCCTGGACGTTTCTGGCTTGGGCGCCGTCACCACGGTT
GACGCTGTCATCGACAAAGGCGACAGCCTCGCGGCGCTGGCGAGCAACGG
CAGCGGCGGTGGCGGCGCGGGCAGCGGGGGCTTGAGCGCAAGCGGCAAGG
GCGGCGGCGGCGGGGCATTCCGGGTCAGCAGGTGGGGCACCAGCGGCCGC
AGCAGCCGGCGATGGAGCAAGAGCCAGCGGACCGTCAACACCGGCAGCAA
GGCGATGATGCTGAGTGACATGTCGGCGAGCCGGCGGAAGCTCAACATGT
CTGCCGTCGGGACACGGGTGAATCAGTCATCTCAGCTCTCTTTTTACTCG
GCATCGCTCTATGTTTCTCCTGATATCTCTGCACGGTACTTGCAGAATTC
AGAAGGCAGCTTCTAGCAGTTCGATAGTTGCCTTCTCTTCCCTCTCAGAG
TGCTTCCTTGTCCGTCCCATAGGTCGCCCGAGCAACTGCTTGCCAAGCCA
GCCACCGCCGTTTCCCTCTTGCACCGCTAATTTTTCCCAATCCGCCCGCC
TCGTCGCTATTTGCTTCCACCGCCGCGGGCCACTTCGTGCAAAACCTGTC
CTCGCATAAATTAAAAAGGCATTCGCGTCACCGGAAATGCTGCTGGTGGA
CCGGTCGACGGGCCGCTACAAAGCCATGGCGGAGTACGGCCTCAACGTCG
ACGAGTACGCGCTTGGATCCATGCTACGCTACATGCTCACCGGGTCAGTC
GGCGGCCGTGATCCGGCGCGGGTCAGCATCGACCTCTCTTCTATTTCTTT
TTCTTTTGTCTTGGTTACATTCGGAAGGGAATGGTTGAAACGTTGCCATT
CTGGCGGTTTCTTATAAGATGCAATCGCCTGCTGACATGCAGCAACGACT
CTGAACCAGCGGTGGATATAAGTGCACGCCGCCGCGTTCACATCTTTGTT
CATGTTCTTGCCCCCGGGCTCTGCTAATCCTTTTTTGTGGTCGCGTTATC
CCCGTTGACGCGTGGCTGCCGCCGGAACAGATGCCCGCCGGACCGCACCG
TGGCGGATTTCAAGGCGGGGCGGTCTGGCTTCTGCTCGCTGTGCATGGGC
ATGGTCCCGCCACCCATCAAGTATTTAACAGAGGTAAGGCACGGCACGGC
CACGGAGGGAAGAGGAATTAAGAAGTGGTGGGTGAAACTGTTGCAGGCTG
AGGGTGGTCCCGGCCAAAGGCCCAAAAGAGCTTCGGACTCGTCACGAACC
TGCCTTGCTTGTAGTCATGTGGAATGTGACCAGAAACATGTTTTGGAAAG
AGAGATTCCCCCAGCCGCTTGCAACCCACGAACTAAACTCAGTCGCCCTT
CTCGCTTTGGAGCATCGGCAGGTGAGCAGCGAGGCGCGAGACCTGTGCCT
AGCGCTCTGCGACCGCAACCCTGACACTCGCCTCGGCCTCTCCATGGCCC
TCCTGCACCCGTGGGTCCTGCGCGGCAACTTCGGACCCCTCGATGCCTGG
GTCGACGGGCCGCGGGATGGCCTCGAGGCGGCTGGTGCGCCGCCGTCGGT
GCTGGCACCGGCGGCGGCGGCGGTCTACAGGGAGGAGGCGGTGGCCGGTG
GGGTGGTGGTGTTTGGCGGCGCTTTCGACGGAGAAGGTGGCACGGAGGAT
GCCAAGGAGCCTGGGGACGGCGGCGGCGGGGGCGGCGGCGGCGGCGGGAA
AATGGACGGCGAGAGTGTGAGCATGCTGCCGTCGGCGGGGCTGCGGCTGC
CGCAGCTGGCGGAAGTATCATCGATCGCGTCCAGTTTAAGGGAAGGGAGC
ATTATCGGCGTCACCACAGCAGCCGCCGCTGCGGCGGCCGCCGCCGTCGC
CGCCACTCCGGCTGTTGTGGCCATCGCTCCCGGTGCTGTCACTCCCCAGG
CGGCAGGCAAAGCCGGCGGAACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6532:1232..3404+

>mRNA_P-wetherbeei_contig6532.1.1 ID=mRNA_P-wetherbeei_contig6532.1.1|Name=mRNA_P-wetherbeei_contig6532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1347bp|location=Sequence derived from alignment at P-wetherbeei_contig6532:1232..3404+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGTAGCGGGGGACGAGGCGGCGCCGCGGCGGCGGCCGTCCCTGATCCG
CCGGCTGGCGTCGCGCGGCCGCGCCGGCAGCAAGGACGGGTCGCTGCTCG
ACGACGGCAGCAAGAGCCGCCACGGCGCCGCCGGCGGTGGCGGCAGTATG
GACGGCAGCAAGACGGGGAGCATCGGCGGCGGGGGCGGCGGCGTCGACAT
CAGCGGGCTTGTGACGGGCTACGTGAGCAGGGCGACCAGCGGCAGCGGCG
ATTTCGGCGGCGGCCTGGACGTTTCTGGCTTGGGCGCCGTCACCACGGTT
GACGCTGTCATCGACAAAGGCGACAGCCTCGCGGCGCTGGCGAGCAACGG
CAGCGGCGGTGGCGGCGCGGGCAGCGGGGGCTTGAGCGCAAGCGGCAAGG
GCGGCGGCGGCGGGGCATTCCGGGTCAGCAGGTGGGGCACCAGCGGCCGC
AGCAGCCGGCGATGGAGCAAGAGCCAGCGGACCGTCAACACCGGCAGCAA
GGCGATGATGCTGAGTGACATGTCGGCGAGCCGGCGGAAGCTCAACATGT
CTGCCGTCGGGACACGGGCATTCGCGTCACCGGAAATGCTGCTGGTGGAC
CGGTCGACGGGCCGCTACAAAGCCATGGCGGAGTACGGCCTCAACGTCGA
CGAGTACGCGCTTGGATCCATGCTACGCTACATGCTCACCGGATGCCCGC
CGGACCGCACCGTGGCGGATTTCAAGGCGGGGCGGTCTGGCTTCTGCTCG
CTGTGCATGGGCATGGTCCCGCCACCCATCAAGTATTTAACAGAGGTGAG
CAGCGAGGCGCGAGACCTGTGCCTAGCGCTCTGCGACCGCAACCCTGACA
CTCGCCTCGGCCTCTCCATGGCCCTCCTGCACCCGTGGGTCCTGCGCGGC
AACTTCGGACCCCTCGATGCCTGGGTCGACGGGCCGCGGGATGGCCTCGA
GGCGGCTGGTGCGCCGCCGTCGGTGCTGGCACCGGCGGCGGCGGCGGTCT
ACAGGGAGGAGGCGGTGGCCGGTGGGGTGGTGGTGTTTGGCGGCGCTTTC
GACGGAGAAGGTGGCACGGAGGATGCCAAGGAGCCTGGGGACGGCGGCGG
CGGGGGCGGCGGCGGCGGCGGGAAAATGGACGGCGAGAGTGTGAGCATGC
TGCCGTCGGCGGGGCTGCGGCTGCCGCAGCTGGCGGAAGTATCATCGATC
GCGTCCAGTTTAAGGGAAGGGAGCATTATCGGCGTCACCACAGCAGCCGC
CGCTGCGGCGGCCGCCGCCGTCGCCGCCACTCCGGCTGTTGTGGCCATCG
CTCCCGGTGCTGTCACTCCCCAGGCGGCAGGCAAAGCCGGCGGAACC
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