mRNA_P-wetherbeei_contig12736.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12736.1.1
Unique NamemRNA_P-wetherbeei_contig12736.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: A0A7S3KVU8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KVU8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.490e-17
Identity = 57/175 (32.57%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  638 DVPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTASRMDMVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLLGDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRLL 1162
            D PW+ KT +AV+RG  +G+V         ++S  +  +  R  ++  ++     D   +ST+N   +  +    L    ++ ++ L YK I+ ++GN  SS L WA  ++SVV M  PL     ++  LEPW+H+IP  R+FSDL + V W   HDAE   I+ RA + +  L+
Sbjct:  312 DRPWQEKTDKAVFRGKLTGNVKAA-----HENSVEKCRSIPRCRLILEYKASKFVDARLTSTSNVLPEVIDGFN-LTSRVLSMQDILSYKGIIVLEGNDVSSGLKWALLSSSVVLMPEPLFTSWAMEELLEPWIHYIPIERDFSDLDEKVAWMIRHDAEARRISYRATLWIKDLV 480          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: A0A6C0CSC6_9ZZZZ (CAP10 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CSC6_9ZZZZ)

HSP 1 Score: 86.3 bits (212), Expect = 5.590e-15
Identity = 58/221 (26.24%), Postives = 109/221 (49.32%), Query Frame = 2
Query:  557 RNGIVMWPGLRQSTENYQQHMADARAVDVPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTASRMDMVRAFRNDSLFDVAFSSTNNGQRQ-HAEMLRPLLGDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRLLLPDHERWVQTAMLRRIRD 1216
            +NG++    L+ S   +   + + +++D+P+E K    +WRG T+G+           H +   L A     V+   N+   DV F++   G ++ H    +  +   M+ ++ L+YK ++S++GN  +S L W   +NSVV M  P      ++  LEP+VH+IP   +FSD+ + + W   +  +C EI   A   + + L    E  ++  +L++  D
Sbjct:  112 KNGVI----LKLSNNRHWLPINNVKSMDIPFESKKNILIWRGATTGEFH-------HSHFNDNRLLA-----VKQCHNNKNCDVGFTTFCQGIKEYHYPQFKKQM---MSVDKILKYKYLLSLEGNDVASGLKWQLYSNSVVFMRKPTCVSWAMEDTLEPYVHYIPLKDDFSDVDQQITWANNNQEKCKEIINNANNFIEQFLDERKEAIIENLVLKKYLD 313          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: A0A7S2LMU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LMU6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.180e-14
Identity = 55/190 (28.95%), Postives = 91/190 (47.89%), Query Frame = 2
Query:  602 NYQQHMADARAV---DVPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTASRMDMVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLLGDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRLL 1162
            N ++H   A  +   D+ W+ K A+AVWRG             G+ H + +     +  +V    N +  D  FS    G   H      ++G  M  +EQL+YK I+S++GN  SS L W   +NSVV M  P      ++  LE +VH+IP  R+ S++ + ++W   +  +   I+ R+ + +  LL
Sbjct:  265 NRKRHFGVASIIPENDISWDEKIAKAVWRGKF-----------GKTHDTIKDTNDIKFALVSRHINSTAVDAKFSKHTKGAPPH------MIGSYMDVKEQLKYKYIISIEGNDVSSGLKWMLFSNSVVLMPKPTWESWAMEGMLEEFVHYIPIERDGSNVEEMIQWAEEYPEKTRMISERSTLFIYDLL 437          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: UPI000D6E6B6C (glycosyl transferase family 90 n=1 Tax=Reichenbachiella versicolor TaxID=1821036 RepID=UPI000D6E6B6C)

HSP 1 Score: 81.6 bits (200), Expect = 2.210e-13
Identity = 55/193 (28.50%), Postives = 98/193 (50.78%), Query Frame = 2
Query:  626 ARAVDVPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTASRMDMVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLLGDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRLLLPDHERWVQTAMLR 1204
            A   D+PWE+K    VWRG T+G   KQ                 R++ V+   N   +DV F++T    +Q  E L+    + ++  EQL+YK I+S++GN  +S L W  ++NSV  M  P  +   ++  L P +H++  + + S+L + + W   +D  C +IA   + ++ + L  +++  VQ  +L+
Sbjct:  151 ANQEDIPWEKKRNNVVWRGATTG--KKQ-----------------RVEFVKKHFNK--YDVGFATT----KQKPE-LKSYKKNKISIAEQLKYKYIISLEGNDVASNLRWVLSSNSVPIMPKPYWHSWIMEEKLTPNIHYLELNDDLSNLEEILDWAANNDKLCKDIALNGKKYMSQFLDSEYDIQVQALLLK 317          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: A0A7S0B2S3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B2S3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.710e-13
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  878 MTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRLLL-PDHER 1180
            MT EEQLRYKI+++++GN  SS L W   + SVV M  P      ++  LEP+VH++P + N S+  + VRW   +D +   IA RA + +  +L  PD E+
Sbjct:    1 MTIEEQLRYKILINLEGNDVSSGLKWMLLSTSVVLMSPPTRTSWAMEELLEPFVHYVPLAENGSNAEEMVRWILDNDEKAQRIAERATLFMEDMLYHPDAEK 102          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: B8CG89_THAPS (CAP10 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG89_THAPS)

HSP 1 Score: 83.2 bits (204), Expect = 3.210e-13
Identity = 62/192 (32.29%), Postives = 93/192 (48.44%), Query Frame = 2
Query:  602 NYQQHMADARAV---DVPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTASRMDMVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLL-GDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGL-EPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRLL 1162
            N ++H   A  V   D+ WE K  +AVWRG   G   K  +G      +T  +   +  +V    N SL D  FS       +HA+   PL+ G  +  ++QLRYK I+S++GN  SS L W   +NS+V +     +E     GL EP VH++P   + S++ + + W   H  E   I  R+ V +  LL
Sbjct:  265 NRKRHFGVASLVPENDIQWEEKMPKAVWRG-QYGKTDKSHNG--SDIDNTHDI---KYALVSKHLNSSLVDAKFS-------RHADSAPPLMAGSYLDMKDQLRYKYIISIEGNDVSSGLKWMLFSNSIV-LAPSFTWEGWAMEGLLEPHVHYLPLKEDMSNVEEMIAWAEDHPNEVQLIRERSTVFIHDLL 442          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: A0A6G6XPN2_9VIRU (CAP10 domain-containing protein n=1 Tax=Dishui Lake large algae virus 1 TaxID=2704073 RepID=A0A6G6XPN2_9VIRU)

HSP 1 Score: 80.1 bits (196), Expect = 5.330e-13
Identity = 53/180 (29.44%), Postives = 88/180 (48.89%), Query Frame = 2
Query:  641 VPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTASRMDMVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLLGDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRLLLPDHER 1180
            +PWE+K     WRGG SG         G+           R++MVR   N    DV F  T +    + +    L  + +  +EQ++YK ++ +DGN+ +S  TW FA+ SV  M+  + +E      L PWVH++P   + +DL + ++W + +D    +IA  A      +L PD ++
Sbjct:  119 IPWEKKQNLLFWRGGVSG---------GDW----------RVNMVRCCLNIPRTDVKFVDTYSRPGCNPQETPELFTEKIDVKEQMKYKALLYIDGNSSASNATWIFASGSVPVMI--MRHEFWFSKHLVPWVHYVPVKWDRTDLVERLQWIWDNDDAARKIAENALELSRTILTPDAQK 277          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: A0A7S2E8J2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8J2_TRICV)

HSP 1 Score: 81.3 bits (199), Expect = 5.990e-13
Identity = 64/240 (26.67%), Postives = 105/240 (43.75%), Query Frame = 2
Query:  599 ENYQQHMADARAVDVPWERKTARAVWRGGTSG-------DVSKQADGRGEQHSSTR---------PLTASRMDMVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLLGDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSD--------------LRKNVRWCFAHDAECGEIAARAQVHVGRLLLP----DHERWVQTAMLRRIRD 1216
            E+  + + +    D+PWE+KT  A+WRG   G       DV K+A G     S+           P  +  +   R+   D+ F       N G     +    L GD ++  E LR+K+++SV+GN  ++ L W+  + SVV M  P      ++  L PWVH++P  RN  D              +    +W   ++ E  +I+ RA + +  + L     D E+ ++  MLRR  D
Sbjct:  173 ESQHEMLWEVLTRDIPWEKKTNGAIWRGSMQGVNRTCHEDVLKKAKGGNNTISNEVEREICLKCIPRCSIVLSSARSKNVDAKFLPESFPHNAGISSSLDGFH-LEGDELSIREMLRFKMLISVEGNGVAADLIWSLMSRSVVLMPKPTITSWAMEELLVPWVHYVPLERNDDDNGDEGSRVGPGQYDVEDKAQWVLKNEEEARKISERATLFIWDMFLHYDAWDEEQMIKKEMLRRYID 411          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: A0A7S2G774_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G774_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 9.500e-13
Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = 2
Query:  641 VPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTAS--RMDMVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLL-GDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRL 1159
            +PW +K    VWRG T+G   K          +  P TA   R   V +   +   +V F+      R+   +      G+ +T  EQLRY+ ++S++GN  ++ L W  A NSVV M  P      ++  L+PWVH++P +R   D+ K ++W  +H+++C  I   A   V R+
Sbjct:   14 IPWRQKLRALVWRGSTTGCCCKD---------NFLPATAPCLRKTFVHSLARN--HNVKFTLPAVQPRRELWVRENYTHGEKLTMTEQLRYRYVLSLEGNDVATDLKWKLAQNSVVLMPRPTKETWLMEGLLQPWVHYVPLNRP-EDVNKTLQWLNSHESDCLRIINNANEWVRRV 177          
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Match: UPI0017884AA2 (glycosyl transferase family 90 n=1 Tax=Halomonas sp. FME16 TaxID=2487702 RepID=UPI0017884AA2)

HSP 1 Score: 79.7 bits (195), Expect = 2.290e-12
Identity = 49/192 (25.52%), Postives = 96/192 (50.00%), Query Frame = 2
Query:  638 DVPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTASRMDMVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLLGDPMTQEEQLRYKIIVSVDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFSDLRKNVRWCFAHDAECGEIAARAQVHVGRLLLPDHERWVQTAMLRRIR 1213
            D+PW+ K +  +WRG T+G  +                   R+ +VR ++  + ++V FS  N   +  AE  + ++G  ++ ++QL++K I+S++GN  ++ L W  A+NSV  M         ++  L P+VH++P + N  +L +   WC  +D  C +IA   + ++      ++E+ +   + R  R
Sbjct:  266 DIPWQEKDSNLIWRGTTTGIRNH----------------GKRVSLVRNYK--ARYNVGFSHLNK--QASAEFDKYVVGR-VSVKDQLKFKYIISIEGNDVATNLKWILASNSVPVMPKSTRESWLLESQLIPYVHYVPLNDNLDNLDEVYEWCLNNDEHCKQIAENGKRYMEMFFDENNEKEIYRMIYREYR 436          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12736.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3KVU8_9STRA1.490e-1732.57Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6C0CSC6_9ZZZZ5.590e-1526.24CAP10 domain-containing protein n=1 Tax=viral meta... [more]
A0A7S2LMU6_9STRA6.180e-1428.95Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
UPI000D6E6B6C2.210e-1328.50glycosyl transferase family 90 n=1 Tax=Reichenbach... [more]
A0A7S0B2S3_9STRA2.710e-1340.20Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B8CG89_THAPS3.210e-1332.29CAP10 domain-containing protein n=1 Tax=Thalassios... [more]
A0A6G6XPN2_9VIRU5.330e-1329.44CAP10 domain-containing protein n=1 Tax=Dishui Lak... [more]
A0A7S2E8J2_TRICV5.990e-1326.67Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2G774_9EUKA9.500e-1330.11Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
UPI0017884AA22.290e-1225.52glycosyl transferase family 90 n=1 Tax=Halomonas s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12736contigP-wetherbeei_contig12736:164..1765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr48834
PFAMsGlyco_transf_90
Model size1393
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.4e-19
EggNOG OGsKOG2458@1|root,KOG2458@2759|Eukaryota,2XDAP@2836|Bacillariophyta
DescriptionGlycosyl transferase family 90
Cds size1236
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.3254032-UTR-P-wetherbeei_contig12736:163..3011683185959.3254032-UTR-P-wetherbeei_contig12736:163..301Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12736 164..301 -
1683185959.351542-UTR-P-wetherbeei_contig12736:1746..17651683185959.351542-UTR-P-wetherbeei_contig12736:1746..1765Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12736 1747..1765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.3339927-CDS-P-wetherbeei_contig12736:301..6331683185959.3339927-CDS-P-wetherbeei_contig12736:301..633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12736 302..633 -
1683185959.3441672-CDS-P-wetherbeei_contig12736:842..17461683185959.3441672-CDS-P-wetherbeei_contig12736:842..1746Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12736 843..1746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12736.1.1prot_P-wetherbeei_contig12736.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12736 302..1746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12736.1.1

>prot_P-wetherbeei_contig12736.1.1 ID=prot_P-wetherbeei_contig12736.1.1|Name=mRNA_P-wetherbeei_contig12736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=412bp
MRSRQQRAPSKPAGLCATFALPRGPLWATVAWCWVAVARLTTVALEQSAE
ELEAVWRLGFWWNNTWCALRDPRNFSTSPFAIPHDSVLVLPDGALGEVVL
PVRGRRYNKERMPLVKNVLPHIIERINSYHVWRYAADAFGPDWLRSSGLD
FIAVTALDGSGPSKLLPMAAHCRGAVYRLRNGIVMWPGLRQSTENYQQHM
ADARAVDVPWERKTARAVWRGGTSGDVSKQADGRGEQHSSTRPLTASRMD
MVRAFRNDSLFDVAFSSTNNGQRQHAEMLRPLLGDPMTQEEQLRYKIIVS
VDGNTCSSVLTWAFATNSVVAMVHPLAYEAPVQYGLEPWVHFIPFSRNFS
DLRKNVRWCFAHDAECGEIAARAQVHVGRLLLPDHERWVQTAMLRRIRDN
KRDCLNPADAR*
back to top

mRNA from alignment at P-wetherbeei_contig12736:164..1765-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12736.1.1 ID=mRNA_P-wetherbeei_contig12736.1.1|Name=mRNA_P-wetherbeei_contig12736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1602bp|location=Sequence derived from alignment at P-wetherbeei_contig12736:164..1765- (Phaeothamnion wetherbeei SAG_119_79)
GATAGGAGATGTGAAATTCATGCGTTCTCGGCAACAAAGAGCGCCTTCGA AGCCAGCCGGCCTATGTGCAACCTTCGCTCTACCCCGGGGCCCGCTGTGG GCGACGGTGGCGTGGTGTTGGGTTGCCGTCGCCAGACTAACAACGGTAGC TTTGGAGCAGTCCGCAGAAGAGCTGGAAGCGGTGTGGCGGCTCGGCTTCT GGTGGAATAACACGTGGTGTGCCCTTCGTGATCCTCGTAACTTTTCCACA AGCCCCTTTGCCATCCCGCATGACTCGGTCCTGGTGCTGCCCGATGGCGC TCTAGGCGAGGTCGTCCTCCCGGTGCGTGGCCGTCGCTACAACAAGGAAC GGATGCCTCTCGTGAAGAATGTCCTGCCTCACATCATCGAACGAATCAAT TCGTACCACGTGTGGCGCTATGCGGCCGATGCCTTCGGCCCAGATTGGTT GCGCAGCAGCGGCCTCGATTTCATCGCCGTCACGGCCCTCGACGGCAGCG GCCCTTCCAAGCTGCTCCCGATGGCAGCGCACTGCCGCGGCGCGGTGTAC CGCCTGCGCAACGGAATCGTCATGTGGCCGGGCCTGCGGCAGTCCACCGA AAACTACCAGCAGCACATGGCGGACGCCCGGGCGGTGGACGTCCCGTGGG AGCGCAAGACGGCCCGCGCGGTATGGCGGGGCGGCACCAGCGGCGACGTA AGCAAGCAGGCCGACGGCAGGGGCGAGCAGCATAGCAGCACGCGGCCGCT GACGGCCAGCCGGATGGACATGGTGCGCGCCTTCCGCAATGACTCGCTCT TCGACGTCGCCTTCAGCAGCACCAACAACGGGCAGCGGCAACACGCCGAG ATGCTGCGGCCGCTCCTGGGCGATCCCATGACGCAGGAGGAGCAGCTCCG CTACAAGATTATCGTGTCTGTCGGTGAGTTTTAAACTTGGCTGCCAATGC ATTCTCTTCCTTTCTTTCTCGAAGCCTTGAGACCGTCGCCGATTTACTGG GGATTCATGAAGTTTGGCTGAAGAGGCAATGCAAGCAGCGGCGACAATGC ATTAGCAGCCTTTCTGCATCCTATCCGTCTGATTCTTCGTGTTGTTTTCC GCGTTGCCTTCAATTTCGGCGAAATGAGGCAGACGGGAACACTTGCTCGA GCGTCCTGACGTGGGCTTTCGCCACCAACTCGGTGGTGGCCATGGTGCAT CCGCTCGCCTACGAGGCGCCGGTGCAGTACGGCCTCGAGCCCTGGGTGCA CTTCATTCCCTTCTCAAGAAATTTCTCGGACCTGCGCAAGAACGTGCGCT GGTGCTTCGCGCACGACGCCGAGTGTGGCGAAATCGCCGCGCGCGCCCAG GTGCACGTAGGGCGGCTGCTGTTACCGGACCATGAGCGTTGGGTCCAGAC GGCAATGCTTCGGCGGATCCGCGACAACAAGCGGGATTGCCTCAACCCGG CGGATGCCAGGTGAAGGAGTTAGGCGGTAGGCAGGGCGCACACCGAGAGG CTTAGACTGGTTTAGAACAGGTTTGTAAAATCGTTCATCTCTTACTGAGT CCCCATTACTTTGATTAAAAGTCAATAATGGGAGGAAATAATTTATTCAC GC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12736:164..1765-

>mRNA_P-wetherbeei_contig12736.1.1 ID=mRNA_P-wetherbeei_contig12736.1.1|Name=mRNA_P-wetherbeei_contig12736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig12736:164..1765- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTTCTCGGCAACAAAGAGCGCCTTCGAAGCCAGCCGGCCTATGTGC
AACCTTCGCTCTACCCCGGGGCCCGCTGTGGGCGACGGTGGCGTGGTGTT
GGGTTGCCGTCGCCAGACTAACAACGGTAGCTTTGGAGCAGTCCGCAGAA
GAGCTGGAAGCGGTGTGGCGGCTCGGCTTCTGGTGGAATAACACGTGGTG
TGCCCTTCGTGATCCTCGTAACTTTTCCACAAGCCCCTTTGCCATCCCGC
ATGACTCGGTCCTGGTGCTGCCCGATGGCGCTCTAGGCGAGGTCGTCCTC
CCGGTGCGTGGCCGTCGCTACAACAAGGAACGGATGCCTCTCGTGAAGAA
TGTCCTGCCTCACATCATCGAACGAATCAATTCGTACCACGTGTGGCGCT
ATGCGGCCGATGCCTTCGGCCCAGATTGGTTGCGCAGCAGCGGCCTCGAT
TTCATCGCCGTCACGGCCCTCGACGGCAGCGGCCCTTCCAAGCTGCTCCC
GATGGCAGCGCACTGCCGCGGCGCGGTGTACCGCCTGCGCAACGGAATCG
TCATGTGGCCGGGCCTGCGGCAGTCCACCGAAAACTACCAGCAGCACATG
GCGGACGCCCGGGCGGTGGACGTCCCGTGGGAGCGCAAGACGGCCCGCGC
GGTATGGCGGGGCGGCACCAGCGGCGACGTAAGCAAGCAGGCCGACGGCA
GGGGCGAGCAGCATAGCAGCACGCGGCCGCTGACGGCCAGCCGGATGGAC
ATGGTGCGCGCCTTCCGCAATGACTCGCTCTTCGACGTCGCCTTCAGCAG
CACCAACAACGGGCAGCGGCAACACGCCGAGATGCTGCGGCCGCTCCTGG
GCGATCCCATGACGCAGGAGGAGCAGCTCCGCTACAAGATTATCGTGTCT
GTCGACGGGAACACTTGCTCGAGCGTCCTGACGTGGGCTTTCGCCACCAA
CTCGGTGGTGGCCATGGTGCATCCGCTCGCCTACGAGGCGCCGGTGCAGT
ACGGCCTCGAGCCCTGGGTGCACTTCATTCCCTTCTCAAGAAATTTCTCG
GACCTGCGCAAGAACGTGCGCTGGTGCTTCGCGCACGACGCCGAGTGTGG
CGAAATCGCCGCGCGCGCCCAGGTGCACGTAGGGCGGCTGCTGTTACCGG
ACCATGAGCGTTGGGTCCAGACGGCAATGCTTCGGCGGATCCGCGACAAC
AAGCGGGATTGCCTCAACCCGGCGGATGCCAGGTGA
back to top