mRNA_P-wetherbeei_contig6512.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6512.2.1
Unique NamemRNA_P-wetherbeei_contig6512.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6512.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6512contigP-wetherbeei_contig6512:1565..3068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1135
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionRPA-interacting protein
Ec32 orthologEc-06_001600.1
Cds size1119
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.1386101-UTR-P-wetherbeei_contig6512:1564..15801683186919.1386101-UTR-P-wetherbeei_contig6512:1564..1580Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6512 1565..1580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.1476128-CDS-P-wetherbeei_contig6512:1580..17751683186919.1476128-CDS-P-wetherbeei_contig6512:1580..1775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6512 1581..1775 +
1683186919.1556776-CDS-P-wetherbeei_contig6512:1980..27751683186919.1556776-CDS-P-wetherbeei_contig6512:1980..2775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6512 1981..2775 +
1683186919.1637616-CDS-P-wetherbeei_contig6512:2939..30681683186919.1637616-CDS-P-wetherbeei_contig6512:2939..3068Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6512 2940..3068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6512.2.1prot_P-wetherbeei_contig6512.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6512 1581..3068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6512.2.1

>prot_P-wetherbeei_contig6512.2.1 ID=prot_P-wetherbeei_contig6512.2.1|Name=mRNA_P-wetherbeei_contig6512.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=373bp
MTPLAARQPPPRASIRKRSRIGSLTVADKDELKERCLAKVRVERHRVIER
LRLRRPSVKGSMAFEEACSDGLVTTARAILDSGLYQIGAKRLSPGSAPDG
EEEQLWAADVAPDGWEDCGSFRPQKQRSRLQPASEEPSCSRSRSPPSPRR
ALRAHGDGAAVAAVSLAAASINNGAAGADGAVPGKCVGFQTPPTSRAAPK
VGSPLVDEAPPWQGDGADAATETGMADMDSTDGAGDSGGGGSGGGGGSGR
GSGSGSDGGRMSGSTGNGSYGCVATASGFGDGGSRREGEEEELDDDDLSN
CRLLSPDEYAELMCVIEAALYEEMHNAEREALELYETARAASEAAADAAA
SALPPPPDGTKALLCPLCEADWL
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mRNA from alignment at P-wetherbeei_contig6512:1565..3068+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6512.2.1 ID=mRNA_P-wetherbeei_contig6512.2.1|Name=mRNA_P-wetherbeei_contig6512.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1504bp|location=Sequence derived from alignment at P-wetherbeei_contig6512:1565..3068+ (Phaeothamnion wetherbeei SAG_119_79)
CCATCCAGCTGACGGTATGACTCCATTGGCGGCCAGGCAGCCGCCGCCGC
GAGCGTCCATCAGGAAACGCAGCCGAATTGGTTCCCTCACCGTAGCCGAC
AAGGACGAACTGAAGGAGCGATGCCTGGCAAAGGTTCGCGTAGAGCGGCA
TCGCGTAATAGAGCGCTTGAGGCTCCGCAGGCCCTCCGTGAAAGGATCGA
TGGCTTTCGAGGTATGTTTCGCTTCAAGGAATCTTCAGTTTTTGCCGCCA
AACTGCGGCATTGCATTTCCACTCCAAACATGCCTGTATCTTTCGCGTAC
AGTGCAGCAACAGACGCCAAACGCCTTACCTTGTTTTTTAGCTGTTTATC
CTTCGTTATTAGATCTTCGGGCCGATGTTTCCCTCAGCGAAGCCTCCCTC
TTGACTCGAACAGCAGGAAGCGTGCAGCGACGGCCTAGTCACGACAGCGC
GAGCCATCCTCGACTCTGGCCTCTACCAGATCGGAGCAAAGAGGCTGAGT
CCCGGCAGCGCGCCAGACGGCGAGGAGGAGCAATTGTGGGCTGCAGATGT
TGCTCCAGATGGATGGGAGGACTGCGGCTCCTTCCGTCCACAAAAGCAGC
GGTCGCGGCTCCAGCCGGCCAGCGAAGAACCCTCATGCTCGCGGTCGCGC
TCTCCACCGTCGCCGCGGCGTGCGCTCAGAGCGCATGGCGATGGCGCCGC
AGTCGCAGCCGTCTCCCTCGCCGCTGCAAGCATCAACAATGGCGCCGCAG
GGGCCGACGGCGCGGTCCCGGGCAAGTGCGTGGGATTTCAGACGCCACCC
ACGAGCCGCGCCGCCCCAAAGGTCGGCAGCCCGCTGGTGGATGAGGCCCC
TCCATGGCAGGGAGACGGAGCGGATGCCGCCACCGAAACTGGGATGGCAG
ACATGGACAGCACGGACGGTGCGGGCGACAGCGGCGGCGGTGGCAGCGGC
GGCGGCGGCGGCAGCGGCAGGGGCAGTGGCAGCGGCAGCGACGGTGGCAG
AATGAGCGGCAGCACGGGAAACGGCAGCTACGGCTGCGTCGCCACCGCCA
GCGGATTCGGCGACGGCGGCAGCAGGAGAGAGGGAGAGGAGGAAGAGCTG
GACGACGACGACCTGAGCAACTGCCGGCTGCTGTCGCCGGACGAGTATGC
GGAGCTCATGTGCGTCATTGAGGCCGCACTCTACGAGGAGATGCACAACG
CCGAGCGAGAGGTGCGTTCCCGCGCTCCTTTTCTAATGCTTGCCGTTATA
TTGCGTAGTTTCATATCATATCCTGTTGGTGAAAGGGCTTCGGAATCTTC
TTTTTTATCGTTTTTGAGGCCTTGGATGGGACAGTCAACGCTCGTTTTCC
CTTTTTTCATTCCCTCCACCTCCAGGCCTTGGAGCTATACGAGACGGCGC
GCGCCGCCAGCGAGGCCGCCGCCGATGCCGCCGCCTCGGCCCTCCCGCCG
CCGCCGGACGGCACCAAGGCGCTGCTCTGCCCACTGTGTGAGGCGGACTG
GCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6512:1565..3068+

>mRNA_P-wetherbeei_contig6512.2.1 ID=mRNA_P-wetherbeei_contig6512.2.1|Name=mRNA_P-wetherbeei_contig6512.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1119bp|location=Sequence derived from alignment at P-wetherbeei_contig6512:1565..3068+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCCATTGGCGGCCAGGCAGCCGCCGCCGCGAGCGTCCATCAGGAA
ACGCAGCCGAATTGGTTCCCTCACCGTAGCCGACAAGGACGAACTGAAGG
AGCGATGCCTGGCAAAGGTTCGCGTAGAGCGGCATCGCGTAATAGAGCGC
TTGAGGCTCCGCAGGCCCTCCGTGAAAGGATCGATGGCTTTCGAGGAAGC
GTGCAGCGACGGCCTAGTCACGACAGCGCGAGCCATCCTCGACTCTGGCC
TCTACCAGATCGGAGCAAAGAGGCTGAGTCCCGGCAGCGCGCCAGACGGC
GAGGAGGAGCAATTGTGGGCTGCAGATGTTGCTCCAGATGGATGGGAGGA
CTGCGGCTCCTTCCGTCCACAAAAGCAGCGGTCGCGGCTCCAGCCGGCCA
GCGAAGAACCCTCATGCTCGCGGTCGCGCTCTCCACCGTCGCCGCGGCGT
GCGCTCAGAGCGCATGGCGATGGCGCCGCAGTCGCAGCCGTCTCCCTCGC
CGCTGCAAGCATCAACAATGGCGCCGCAGGGGCCGACGGCGCGGTCCCGG
GCAAGTGCGTGGGATTTCAGACGCCACCCACGAGCCGCGCCGCCCCAAAG
GTCGGCAGCCCGCTGGTGGATGAGGCCCCTCCATGGCAGGGAGACGGAGC
GGATGCCGCCACCGAAACTGGGATGGCAGACATGGACAGCACGGACGGTG
CGGGCGACAGCGGCGGCGGTGGCAGCGGCGGCGGCGGCGGCAGCGGCAGG
GGCAGTGGCAGCGGCAGCGACGGTGGCAGAATGAGCGGCAGCACGGGAAA
CGGCAGCTACGGCTGCGTCGCCACCGCCAGCGGATTCGGCGACGGCGGCA
GCAGGAGAGAGGGAGAGGAGGAAGAGCTGGACGACGACGACCTGAGCAAC
TGCCGGCTGCTGTCGCCGGACGAGTATGCGGAGCTCATGTGCGTCATTGA
GGCCGCACTCTACGAGGAGATGCACAACGCCGAGCGAGAGGCCTTGGAGC
TATACGAGACGGCGCGCGCCGCCAGCGAGGCCGCCGCCGATGCCGCCGCC
TCGGCCCTCCCGCCGCCGCCGGACGGCACCAAGGCGCTGCTCTGCCCACT
GTGTGAGGCGGACTGGCTG
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