mRNA_P-wetherbeei_contig12735.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12735.2.1
Unique NamemRNA_P-wetherbeei_contig12735.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig12735.2.1 vs. uniprot
Match: A0A6M5YMN4_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YMN4_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 4.850e-9
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 GRLAVACVRPLPQTPWVDDLVADGAPAPLDDGTYREAMAALGL 129
            GRLA+AC +PLPQTPW+D L  +G   PLDD T REA AALG+
Sbjct:  281 GRLAIACGKPLPQTPWLDQLAPEGDVTPLDDATRREAAAALGV 323
[Close]
BLAST of mRNA_P-wetherbeei_contig12735.2.1 vs. uniprot
Match: A0A6M5YIW4_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YIW4_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.600e-8
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 GRLAVACVRPLPQTPWVDDLVADGAPAPLDDGTYREA 111
            GRLA+AC +P+PQTPWVD+L  +G PAPLD+ TYR A
Sbjct:  281 GRLAIACGKPMPQTPWVDELAPEGKPAPLDNDTYRAA 317
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12735.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6M5YMN4_9BACT4.850e-965.12Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
A0A6M5YIW4_9BACT1.600e-867.57Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12735contigP-wetherbeei_contig12735:1539..1946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size408
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.3023083-CDS-P-wetherbeei_contig12735:1538..19461683185959.3023083-CDS-P-wetherbeei_contig12735:1538..1946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12735 1539..1946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12735.2.1prot_P-wetherbeei_contig12735.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12735 1539..1946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12735.2.1

>prot_P-wetherbeei_contig12735.2.1 ID=prot_P-wetherbeei_contig12735.2.1|Name=mRNA_P-wetherbeei_contig12735.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
GRLAVACVRPLPQTPWVDDLVADGAPAPLDDGTYREAMAALGLARPVPVW
VSPPKVIEYVPDCVPSAPATLPPPLSLPESEDEEEVEPAPDYRPRRRHRP
RRRHRQAVDARVRLLLKFAAVAALGVIAVFAVRAAI
back to top

mRNA from alignment at P-wetherbeei_contig12735:1539..1946-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12735.2.1 ID=mRNA_P-wetherbeei_contig12735.2.1|Name=mRNA_P-wetherbeei_contig12735.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig12735:1539..1946- (Phaeothamnion wetherbeei SAG_119_79)
GGTCGGCTGGCGGTGGCGTGCGTGCGTCCGTTGCCCCAGACCCCGTGGGT
GGACGATCTGGTGGCGGACGGGGCGCCGGCCCCGCTCGACGATGGCACCT
ATCGAGAGGCGATGGCGGCGCTCGGCCTGGCCCGGCCCGTGCCGGTCTGG
GTGTCGCCACCAAAGGTGATCGAGTACGTACCCGATTGCGTTCCGTCGGC
ACCGGCGACGTTGCCACCCCCTTTGTCGCTTCCCGAATCAGAGGACGAGG
AGGAGGTTGAACCCGCTCCGGATTATCGACCACGTCGCCGCCATCGACCA
CGTCGCCGCCACCGTCAGGCAGTTGACGCGCGCGTCCGACTTCTGCTCAA
GTTCGCGGCAGTCGCGGCGCTGGGTGTGATCGCAGTGTTTGCCGTCCGGG
CCGCAATA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12735:1539..1946-

>mRNA_P-wetherbeei_contig12735.2.1 ID=mRNA_P-wetherbeei_contig12735.2.1|Name=mRNA_P-wetherbeei_contig12735.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig12735:1539..1946- (Phaeothamnion wetherbeei SAG_119_79)
GGTCGGCTGGCGGTGGCGTGCGTGCGTCCGTTGCCCCAGACCCCGTGGGT
GGACGATCTGGTGGCGGACGGGGCGCCGGCCCCGCTCGACGATGGCACCT
ATCGAGAGGCGATGGCGGCGCTCGGCCTGGCCCGGCCCGTGCCGGTCTGG
GTGTCGCCACCAAAGGTGATCGAGTACGTACCCGATTGCGTTCCGTCGGC
ACCGGCGACGTTGCCACCCCCTTTGTCGCTTCCCGAATCAGAGGACGAGG
AGGAGGTTGAACCCGCTCCGGATTATCGACCACGTCGCCGCCATCGACCA
CGTCGCCGCCACCGTCAGGCAGTTGACGCGCGCGTCCGACTTCTGCTCAA
GTTCGCGGCAGTCGCGGCGCTGGGTGTGATCGCAGTGTTTGCCGTCCGGG
CCGCAATA
back to top