prot_P-wetherbeei_contig6478.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig6478.2.1
Unique Name	prot_P-wetherbeei_contig6478.2.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	91

Homology

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A3C0TXD1_9PROT (DNA-binding protein HU n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXD1_9PROT)

HSP 1 Score: 149 bits (375), Expect = 4.690e-45
Identity = 75/90 (83.33%), Postives = 86/90 (95.56%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKN+LIA++ADD++++KADA RAVDSIL+II K+LKK GEVRLVGFGTFSVVKRKASEGRNPRTGE IKIPASKQPKFKAGK+LKDAVN
Sbjct:    1 MNKNDLIASLADDMDISKADATRAVDSILKIIEKALKKGGEVRLVGFGTFSVVKRKASEGRNPRTGETIKIPASKQPKFKAGKSLKDAVN 90

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A3D5RTE7_9PROT (DNA-binding protein HU n=2 Tax=Bacteria TaxID=2 RepID=A0A3D5RTE7_9PROT)

HSP 1 Score: 137 bits (346), Expect = 1.280e-40
Identity = 73/90 (81.11%), Postives = 79/90 (87.78%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKN+LIAAVAD   +TKADAA+AVDSILE IT SLKK  EVRLVGFGTFSV +R ASEGRNPRTGE IKIPASK+PKF AGKALKDAVN
Sbjct:    1 MNKNDLIAAVADSAGLTKADAAKAVDSILENITASLKKQNEVRLVGFGTFSVARRAASEGRNPRTGEKIKIPASKRPKFSAGKALKDAVN 90

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A352KEK0_9PROT (DNA-binding protein HU n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KEK0_9PROT)

HSP 1 Score: 134 bits (337), Expect = 2.930e-39
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKN+LIA+VA+  E++KADA +AVD++ + IT +LK  G+VRLVGFGTFSVVKRKASEGRNPRTGEAIKIPAS QPKFKAGK LKDAVN
Sbjct:    1 MNKNDLIASVAEAAELSKADATKAVDAVFDTITGTLKGGGDVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASNQPKFKAGKGLKDAVN 90

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A5J6MXB1_9PROT (Transcriptional regulator n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6MXB1_9PROT)

HSP 1 Score: 130 bits (328), Expect = 6.900e-38
Identity = 67/90 (74.44%), Postives = 78/90 (86.67%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKN+LIA V+ +  ++K DAARAVD++ ++ITKSLKK  EVRLVGFGTF V KR ASEGRNPRTGE I+IPASKQPKFKAGKALKDAVN
Sbjct:    1 MNKNDLIADVSTETGLSKGDAARAVDAVFDVITKSLKKGTEVRLVGFGTFVVTKRAASEGRNPRTGEKIEIPASKQPKFKAGKALKDAVN 90

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A2S6QCP7_9PROT (DNA-binding protein HRm n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6QCP7_9PROT)

HSP 1 Score: 130 bits (327), Expect = 9.800e-38
Identity = 65/90 (72.22%), Postives = 79/90 (87.78%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKN+L+AAVAD  +++KAD+A+AVD++ + IT +LK  G+VRLVGFGTFSV  RKAS GRNPRTGEAI+IPASKQPKFKAGK LKDAVN
Sbjct:    1 MNKNDLVAAVADGADLSKADSAKAVDAVFDSITGALKGGGDVRLVGFGTFSVANRKASTGRNPRTGEAIQIPASKQPKFKAGKGLKDAVN 90

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A2E8T7Y1_9PROT (DNA-binding protein HU n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E8T7Y1_9PROT)

HSP 1 Score: 130 bits (327), Expect = 9.800e-38
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKN+LI AVAD  ++T A A +AVDS++  IT SLKK  EVRLVGFGTFSV KRKAS+GRNPRTGE IKIPASKQPKFKAGKALK+AVN
Sbjct:    1 MNKNDLIKAVADSADLTNAQAGKAVDSVVGSITGSLKKGQEVRLVGFGTFSVAKRKASKGRNPRTGEEIKIPASKQPKFKAGKALKEAVN 90

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A3M1G088_9PROT (HU family DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1G088_9PROT)

HSP 1 Score: 130 bits (326), Expect = 1.430e-37
Identity = 66/90 (73.33%), Postives = 78/90 (86.67%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKN+L+A VAD  +++KADAAR+VD++ E ITK+LKK  EVRLVGFGTF+V KR ASEGRNPRTGE IKI ASKQPKF+AGK LKDAVN
Sbjct:    1 MNKNDLVARVADASKLSKADAARSVDAVFETITKALKKGDEVRLVGFGTFAVTKRAASEGRNPRTGEKIKIKASKQPKFRAGKGLKDAVN 90

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A349TYA6_9PROT (DNA-binding protein HU n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349TYA6_9PROT)

HSP 1 Score: 129 bits (325), Expect = 1.980e-37
Identity = 68/90 (75.56%), Postives = 78/90 (86.67%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKNEL+A VA + ++TKADAARAV++I+E I+K+LKK  EVRLVGFGTF V KR ASEGRNPRTG  IKIPASKQPKFKAGKALKD VN
Sbjct:    1 MNKNELVAFVAKEADMTKADAARAVEAIVEGISKTLKKGDEVRLVGFGTFWVAKRAASEGRNPRTGAKIKIPASKQPKFKAGKALKDIVN 90

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BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: UPI0004189D3A (HU family DNA-binding protein n=2 Tax=Nisaea TaxID=390876 RepID=UPI0004189D3A)

HSP 1 Score: 129 bits (325), Expect = 1.980e-37
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKNEL+AAVAD  ++TKADAA AVD++L+ IT +LK   EVRLVGFGTFSV  R ASEGRNPRTGE I+I ASKQPKFKAGK LKDA+N
Sbjct:    1 MNKNELVAAVADSADITKADAASAVDAVLDSITSALKSGDEVRLVGFGTFSVASRAASEGRNPRTGEKIQIAASKQPKFKAGKGLKDALN 90

[Close]

BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Match: A0A6A7KXD1_9PROT (DNA-binding protein HU n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KXD1_9PROT)

HSP 1 Score: 129 bits (324), Expect = 2.810e-37
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0

Query:    1 VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTFSVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN 90
            +NKN+L+A+VADD  ++K+DA RAVDS+ + I K+LKK  EVRLVGFGTFSV  RKAS GRNPRTGE I+IPASKQPKFKAGK LKDA+N
Sbjct:    1 MNKNDLVASVADDSGLSKSDATRAVDSVFDSIMKALKKGSEVRLVGFGTFSVSNRKASVGRNPRTGEQIQIPASKQPKFKAGKGLKDAIN 90

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig6478.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3C0TXD1_9PROT	4.690e-45	83.33	DNA-binding protein HU n=1 Tax=Alphaproteobacteria...	[more]
A0A3D5RTE7_9PROT	1.280e-40	81.11	DNA-binding protein HU n=2 Tax=Bacteria TaxID=2 Re...	[more]
A0A352KEK0_9PROT	2.930e-39	75.56	DNA-binding protein HU n=1 Tax=Alphaproteobacteria...	[more]
A0A5J6MXB1_9PROT	6.900e-38	74.44	Transcriptional regulator n=2 Tax=Hypericibacter T...	[more]
A0A2S6QCP7_9PROT	9.800e-38	72.22	DNA-binding protein HRm n=5 Tax=Alphaproteobacteri...	[more]
A0A2E8T7Y1_9PROT	9.800e-38	75.56	DNA-binding protein HU n=2 Tax=Proteobacteria TaxI...	[more]
A0A3M1G088_9PROT	1.430e-37	73.33	HU family DNA-binding protein n=1 Tax=Alphaproteob...	[more]
A0A349TYA6_9PROT	1.980e-37	75.56	DNA-binding protein HU n=2 Tax=Alphaproteobacteria...	[more]
UPI0004189D3A	1.980e-37	73.33	HU family DNA-binding protein n=2 Tax=Nisaea TaxID...	[more]
A0A6A7KXD1_9PROT	2.810e-37	72.22	DNA-binding protein HU n=1 Tax=Alphaproteobacteria...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000119	Histone-like DNA-binding protein	PRINTS	PR01727	DNABINDINGHU	coord: 74..88 score: 53.76 coord: 40..55 score: 49.25 coord: 58..71 score: 57.99
IPR000119	Histone-like DNA-binding protein	SMART	SM00411	bhlneu	coord: 1..90 e-value: 3.7E-44 score: 162.7
IPR000119	Histone-like DNA-binding protein	PFAM	PF00216	Bac_DNA_binding	coord: 1..90 e-value: 1.2E-34 score: 118.4
IPR000119	Histone-like DNA-binding protein	PANTHER	PTHR33175	DNA-BINDING PROTEIN HU	coord: 2..89
IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	GENE3D	4.10.520.10		coord: 1..90 e-value: 2.0E-36 score: 126.1
IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	SUPERFAMILY	47729	IHF-like DNA-binding proteins	coord: 1..90
None	No IPR available	PANTHER	PTHR33175:SF12	DNA-BINDING PROTEIN HU-ALPHA	coord: 2..89
None	No IPR available	CDD	cd13831	HU	coord: 2..87 e-value: 6.53269E-42 score: 129.819
IPR020816	Histone-like DNA-binding protein, conserved site	PROSITE	PS00045	HISTONE_LIKE	coord: 46..65

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig6478	contig	P-wetherbeei_contig6478:1216..1488 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig6478.2.1	mRNA_P-wetherbeei_contig6478.2.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig6478 1216..1488 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig6478.2.1 ID=prot_P-wetherbeei_contig6478.2.1|Name=mRNA_P-wetherbeei_contig6478.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
VNKNELIAAVADDIEVTKADAARAVDSILEIITKSLKKNGEVRLVGFGTF
SVVKRKASEGRNPRTGEAIKIPASKQPKFKAGKALKDAVN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000119	Hist_DNA-bd
IPR010992	IHF-like_DNA-bd_dom_sf
IPR020816	Histone-like_DNA-bd_CS