mRNA_P-wetherbeei_contig6458.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6458.1.1
Unique NamemRNA_P-wetherbeei_contig6458.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6458.1.1 vs. uniprot
Match: A0A7R9UE77_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE77_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.720e-5
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 3 
Query:  171 TTFPRRTAASLAPVAA*RW--EGRW*IAIAKMDRGEAWRSAYQEER----GEALVGRRIRIWWDGDSCYYAADVIEYAPETDIYSVQYLNDT 428
            TT  RRT          +W  +G   + I + D    WR  ++ ER     E LVGRR+RI+WDG+  Y+   V E++PET  + V Y ++T
Sbjct:  199 TTGQRRTKCLCGAKTCRQWLEKGAEQLQILRGD----WRKPHESERVVERAEHLVGRRVRIFWDGNDGYFTGTVAEFSPETGKHKVIYDDET 286
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BLAST of mRNA_P-wetherbeei_contig6458.1.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.040e-5
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 3 
Query:  276 WRSAYQEERGEALVGRRIRIWWDGDSCYYAADVIEYAPETDIYSVQYLN-DTQLYAEQLDNA--QWQID 473
            W  A +EERG AL+G RIRIWWDGD          Y   T  + + Y   DT +Y E L++   QW+I+
Sbjct:    6 WEEAKEEERGAALIGSRIRIWWDGDMVXXXXXXXGYDSATAKHQLIYDGVDTDVYIEDLESGSEQWEIE 74
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BLAST of mRNA_P-wetherbeei_contig6458.1.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 9.270e-5
Identity = 28/69 (40.58%), Postives = 38/69 (55.07%), Query Frame = 3 
Query:  276 WRSAYQEERGEALVGRRIRIWWDGDSCYYAADVIEYAPETDIYSVQYLN-DTQLYAEQLDNA--QWQID 473
            W  A +EERG AL+G R+RIWWDGD          Y   T  + + Y   DT +Y E L++   QW+I+
Sbjct:    6 WEEAKKEERGAALIGSRVRIWWDGDMVXXXXXXXGYDSATAKHQLIYDGVDTDVYIEDLESGSQQWEIE 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6458.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7R9UE77_9STRA2.720e-535.87Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D8LCY6_ECTSI5.040e-542.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTV3_9PHAE9.270e-540.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6458contigP-wetherbeei_contig6458:2..770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCY6
PFAMsHelicase_C,SNF2_N
Model size509
Max annot lvl2759|Eukaryota
KEGG koko:K08737,ko:K11267,ko:K11654
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.18e-07
EggNOG OGsCOG0553@1|root,KOG1525@1|root,KOG0385@2759|Eukaryota,KOG1525@2759|Eukaryota
Descriptionmitotic sister chromatid cohesion
Cds size252
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186914.81534-CDS-P-wetherbeei_contig6458:1..1311683186914.81534-CDS-P-wetherbeei_contig6458:1..131Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6458 2..131 -
1683186914.8249092-CDS-P-wetherbeei_contig6458:391..5131683186914.8249092-CDS-P-wetherbeei_contig6458:391..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6458 392..513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186914.832866-UTR-P-wetherbeei_contig6458:513..7701683186914.832866-UTR-P-wetherbeei_contig6458:513..770Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6458 514..770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6458.1.1prot_P-wetherbeei_contig6458.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6458 2..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6458.1.1

>prot_P-wetherbeei_contig6458.1.1 ID=prot_P-wetherbeei_contig6458.1.1|Name=mRNA_P-wetherbeei_contig6458.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
MDRGEAWRSAYQEERGEALVGRRIRIWWDGDSCYYAADVIEYAPETDIYS
VQYLNDTQLYAEQLDNAQWQIDDNVPQQMRGATA
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mRNA from alignment at P-wetherbeei_contig6458:2..770-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6458.1.1 ID=mRNA_P-wetherbeei_contig6458.1.1|Name=mRNA_P-wetherbeei_contig6458.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=769bp|location=Sequence derived from alignment at P-wetherbeei_contig6458:2..770- (Phaeothamnion wetherbeei SAG_119_79)
GCGCGAAAAAAGTCAAACGCGAGATCCACTAGCACGACAAGCTAGTGCTG
TGTATGGGGCGCTCTGTAAGGGTCGAATACCGCACCATACTCTTGCTTAT
ACTTTGTTTTTGCGCAAACCGTATCGAAAAAAAACAGCACAAGCTTTTTG
AACACACACCTGCGACAGATACGACGTTTCCTCGTCGAACAGCGGCGTCT
TTGGCGCCCGTCGCGGCCTGACGTTGGGAAGGGCGCTGGTGAATTGCAAT
TGCCAAAATGGACCGGGGAGAGGCGTGGCGCAGCGCGTACCAAGAAGAAA
GGGGCGAAGCTCTCGTAGGGCGAAGGATTCGCATATGGTGGGACGGCGAC
AGCTGCTACTACGCCGCCGACGTCATTGAGTAAGCGTTGCAACCCTTTTG
CAAACGTTGGGGCGCGATTCTGGGGTCGGCAACTCCCAAACCAAAGAAAA
CATTCTTCGCTGTTGCCAAGGCTGTTTGCTGCGATTTTTCTCGCGCAAAG
GACTTTCAGGCCGGTAGGCGTGAACCAAGCAATCTCCGCTAGATTCGACG
TGTTTTCGCATGCAGGAAAAGCCCCACAACCTTCGCCCACCTTCGCTGCC
ACGCCGTAGTTCAATCACATTCTCGGGCATCCCTCGCAGGTACGCGCCCG
AGACCGACATCTACTCCGTCCAGTACCTGAACGACACGCAGCTGTACGCC
GAGCAGCTCGACAATGCTCAGTGGCAGATCGACGACAACGTACCGCAGCA
GATGCGCGGTGCTACCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6458:2..770-

>mRNA_P-wetherbeei_contig6458.1.1 ID=mRNA_P-wetherbeei_contig6458.1.1|Name=mRNA_P-wetherbeei_contig6458.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig6458:2..770- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGGGGAGAGGCGTGGCGCAGCGCGTACCAAGAAGAAAGGGGCGA
AGCTCTCGTAGGGCGAAGGATTCGCATATGGTGGGACGGCGACAGCTGCT
ACTACGCCGCCGACGTCATTGAGTACGCGCCCGAGACCGACATCTACTCC
GTCCAGTACCTGAACGACACGCAGCTGTACGCCGAGCAGCTCGACAATGC
TCAGTGGCAGATCGACGACAACGTACCGCAGCAGATGCGCGGTGCTACCG
CC
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