mRNA_P-wetherbeei_contig6431.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6431.1.1
Unique NamemRNA_P-wetherbeei_contig6431.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6431.1.1 vs. uniprot
Match: A0A0B5IXN4_9VIRU (Ankyrin repeat protein n=1 Tax=Pandoravirus inopinatum TaxID=1605721 RepID=A0A0B5IXN4_9VIRU)

HSP 1 Score: 58.2 bits (139), Expect = 6.630e-7
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:  223 ICSAAAGAGRLETLLWLREESRQYDWDEETTRAAAASGHLAVLQAARAGDCPWGPR 390
            +C+AAA AGRL+TL WLR+  R + WD+ T   A A+GH AV   ARA  C   PR
Sbjct:  132 VCAAAASAGRLDTLQWLRQ--RGFSWDDWTCALAGANGHQAVYDWARAHGCAERPR 185
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BLAST of mRNA_P-wetherbeei_contig6431.1.1 vs. uniprot
Match: A0A2V0P1N2_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P1N2_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 9.780e-5
Identity = 37/102 (36.27%), Postives = 43/102 (42.16%), Query Frame = 1 
Query:   73 AASHGRIKTLRWARANGCPWGDTCCXXXXXXXXXXXXXXXXXXXXEDGPRICSAAAGAGRLETLLWLREESRQYDWDEETTRAAAASGHLAVLQAARAGDCP 378
            AA HG +  LRWA                                +DG  +C+AAA  G+LE L   RE    Y+W   T   AA SGHLAVLQ ARA   P
Sbjct:  102 AAFHGDLALLRWALPQ---------------------------LEDDGTFLCAAAASGGQLEALQCARELG--YEWSVSTCVEAAHSGHLAVLQWARAQQPP 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6431.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0B5IXN4_9VIRU6.630e-751.79Ankyrin repeat protein n=1 Tax=Pandoravirus inopin... [more]
A0A2V0P1N2_9CHLO9.780e-536.27Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6431contigP-wetherbeei_contig6431:327..818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMP0
PFAMsAnk_2,Ank_4
Model size492
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.85e-08
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186913.0955684-CDS-P-wetherbeei_contig6431:326..8181683186913.0955684-CDS-P-wetherbeei_contig6431:326..818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6431 327..818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6431.1.1prot_P-wetherbeei_contig6431.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6431 327..818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6431.1.1

>prot_P-wetherbeei_contig6431.1.1 ID=prot_P-wetherbeei_contig6431.1.1|Name=mRNA_P-wetherbeei_contig6431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
VGALQWVQGGGFSWADADVDLCGAAASHGRIKTLRWARANGCPWGDTCCR
AAAGGHTEVLEFARADGCPEDGPRICSAAAGAGRLETLLWLREESRQYDW
DEETTRAAAASGHLAVLQAARAGDCPWGPRCCSAAAGGGFLEVLRWARDN
GCPWDNDTCSQVRE
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mRNA from alignment at P-wetherbeei_contig6431:327..818-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6431.1.1 ID=mRNA_P-wetherbeei_contig6431.1.1|Name=mRNA_P-wetherbeei_contig6431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig6431:327..818- (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCGCCCTGCAGTGGGTTCAGGGCGGCGGGTTCTCCTGGGCCGACGC
CGACGTCGACCTCTGTGGCGCCGCCGCATCTCACGGCCGCATCAAGACGC
TCCGTTGGGCCCGCGCCAACGGATGCCCGTGGGGCGACACGTGCTGCCGC
GCCGCCGCCGGTGGCCACACGGAAGTCTTGGAGTTTGCGCGGGCCGACGG
CTGCCCCGAGGACGGCCCTCGGATCTGCAGCGCCGCCGCCGGCGCCGGCC
GGTTGGAGACGCTCCTTTGGCTGCGCGAAGAGAGTCGCCAGTACGACTGG
GATGAGGAGACGACAAGGGCGGCGGCGGCTAGCGGTCATCTGGCGGTGCT
GCAGGCGGCGCGCGCCGGTGACTGCCCATGGGGGCCGCGCTGCTGCAGCG
CCGCCGCAGGCGGGGGCTTCCTGGAGGTGCTGCGTTGGGCGCGGGACAAC
GGGTGCCCGTGGGACAACGACACGTGTTCGCAGGTGAGAGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6431:327..818-

>mRNA_P-wetherbeei_contig6431.1.1 ID=mRNA_P-wetherbeei_contig6431.1.1|Name=mRNA_P-wetherbeei_contig6431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig6431:327..818- (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCGCCCTGCAGTGGGTTCAGGGCGGCGGGTTCTCCTGGGCCGACGC
CGACGTCGACCTCTGTGGCGCCGCCGCATCTCACGGCCGCATCAAGACGC
TCCGTTGGGCCCGCGCCAACGGATGCCCGTGGGGCGACACGTGCTGCCGC
GCCGCCGCCGGTGGCCACACGGAAGTCTTGGAGTTTGCGCGGGCCGACGG
CTGCCCCGAGGACGGCCCTCGGATCTGCAGCGCCGCCGCCGGCGCCGGCC
GGTTGGAGACGCTCCTTTGGCTGCGCGAAGAGAGTCGCCAGTACGACTGG
GATGAGGAGACGACAAGGGCGGCGGCGGCTAGCGGTCATCTGGCGGTGCT
GCAGGCGGCGCGCGCCGGTGACTGCCCATGGGGGCCGCGCTGCTGCAGCG
CCGCCGCAGGCGGGGGCTTCCTGGAGGTGCTGCGTTGGGCGCGGGACAAC
GGGTGCCCGTGGGACAACGACACGTGTTCGCAGGTGAGAGAA
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