mRNA_P-wetherbeei_contig6394.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6394.1.2
Unique NamemRNA_P-wetherbeei_contig6394.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: A0A7S1XU43_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU43_9STRA)

HSP 1 Score: 391 bits (1005), Expect = 4.050e-129
Identity = 195/267 (73.03%), Postives = 223/267 (83.52%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAKHAKTWYEAK 792
            AF AEEG +LIVADYGQLELRLLAH+T+CRSMIDAFA+GGCFHSRTAVGMF H   AVD GEVLLEWDYSKG+PP PL+KD + +ERRKAKTLNFSIAYGKT HGLSKDW VS++EA  +L+AWYADRPEV  WQ+ VK  AR TG +RTLMGRYR L G++  +   R H  RAAINTPIQGGAAD+V+LAM+++ RSE LK LG+KLLLQVHDEVILEGPEE  +EA+ EV  CME PWD+ GL+PL+V L VDAK AKTWYEAK
Sbjct:  183 AFSAEEGNQLIVADYGQLELRLLAHITDCRSMIDAFASGGCFHSRTAVGMFPHVRKAVDDGEVLLEWDYSKGEPPAPLLKDYYGSERRKAKTLNFSIAYGKTVHGLSKDWNVSVDEAKEILDAWYADRPEVLDWQKKVKAEARRTGYTRTLMGRYRALPGISVPKL--RGHGERAAINTPIQGGAADIVVLAMIKLQRSELLKNLGYKLLLQVHDEVILEGPEEQVDEALAEVRRCMEAPWDDFGLKPLKVELTVDAKFAKTWYEAK 447          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: A0A7S2F280_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F280_9STRA)

HSP 1 Score: 379 bits (974), Expect = 3.460e-123
Identity = 192/268 (71.64%), Postives = 221/268 (82.46%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKG-KPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAKHAKTWYEAK 792
            AF A + + L+VADYGQLELRLLAHM NC+SM++AF  GGCFHSRTA+GMF+H   AV+ G VLLEWDYSKG KPP PLVKDV+AAERRKAKTLNFSIAYGKTAHGLSKDWGVS++EAN LLEAWYADRPEV+ WQ    + AR T  +RTLMGRYR L  VNS   G + HS RAAINTPIQGGAADVVM+AM+ +++SE LKRLG++LLLQ+HDEVI+EGPEE+ EEA+R V   MENP+DE GL  LRV L VDAK+ KTWY AK
Sbjct:  272 AFTAGDNQMLVVADYGQLELRLLAHMANCKSMLEAFKTGGCFHSRTALGMFDHIKKAVEEGTVLLEWDYSKGDKPPVPLVKDVYAAERRKAKTLNFSIAYGKTAHGLSKDWGVSVQEANELLEAWYADRPEVKAWQLDTIRQARRTTYTRTLMGRYRKLPNVNSRARGPKGHSERAAINTPIQGGAADVVMMAMVNLNKSEKLKRLGYRLLLQIHDEVIMEGPEENVEEALRTVKELMENPFDEFGLDSLRVPLEVDAKYEKTWYRAK 539          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: A0A7S2WUE3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUE3_9STRA)

HSP 1 Score: 379 bits (972), Expect = 2.380e-122
Identity = 189/269 (70.26%), Postives = 221/269 (82.16%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDE--VGLQPLRVHLAVDAKHAKTWYEAK 792
            AF AE+G   +VADYGQLELRLLAH+TNC+SMI+AF +GGCFHSRTAVGMF+H   AV+ G+VLLEWDYSKG+PP PLVKDV+ AERRKAKTLNFSIAYGKT HGLSKDWGV++ EA +LL+AWY DRPEV++WQE   K AR   V+RTLMGR R L  + +   GAR H  RAAINTPIQG AADVVM+AML++++S  L+ LG+KLLLQ+HDEVILEGPEE+ EEA++ V H MENPWDE  +GL PLRVHL VDAK  KTWY AK
Sbjct:  312 AFCAEDGNMFVVADYGQLELRLLAHITNCQSMIEAFESGGCFHSRTAVGMFDHVRAAVERGDVLLEWDYSKGEPPAPLVKDVYGAERRKAKTLNFSIAYGKTPHGLSKDWGVTVSEAQALLDAWYEDRPEVKKWQEETIKFARREHVTRTLMGRERRLPDITAKSRGARGHMERAAINTPIQGSAADVVMMAMLKLNQSPRLEELGYKLLLQIHDEVILEGPEENVEEALKLVRHLMENPWDEDSLGLSPLRVHLDVDAKFEKTWYRAK 580          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 2.590e-121
Identity = 197/267 (73.78%), Postives = 226/267 (84.64%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAKHAKTWYEAK 792
            AF AEEG  L+VADYGQLELRLLAH+T+C+SMI AF  GGCFHSRTAVGMF+H   AVD GEVLLEWDYSKG+PPKPLVKDVFA+ERR+AKTLNFSIAYGKTAHGLSKDWGV+++EA  L++AWYADRPEV++WQ+ V + A+ TG SRTLMGRYR L  + S++ G   H  RAAINTPIQGGAADV M+AM+ I RS  LK+LGWKLLLQVHDEVILEGPEESAEEA+ E V CM+ PWD +GL+ LRV L VDAK AKTWY+AK
Sbjct: 1336 AFRAEEGNTLVVADYGQLELRLLAHITDCKSMITAFKEGGCFHSRTAVGMFDHVKEAVDKGEVLLEWDYSKGEPPKPLVKDVFASERRQAKTLNFSIAYGKTAHGLSKDWGVTLKEAEDLVKAWYADRPEVKKWQKQVIQNAKDTGFSRTLMGRYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQVHDEVILEGPEESAEEALAETVRCMQQPWDGIGLRELRVDLLVDAKSAKTWYDAK 1602          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: D8LMQ5_ECTSI (Pol1-like DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 2.520e-120
Identity = 195/267 (73.03%), Postives = 224/267 (83.90%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAKHAKTWYEAK 792
            AF AEEG  L+VADYGQLELRLLAH+T+C+SMI AF  GGCFHSRTAVGMF+H   AVD GEVLLEWDYSKG+PPKPLVKDVFA+ERR+AKTLNFSIAYGKT HGL KDWGV+++EA  L++AWYADRPEV+RWQ+ V + A+ TG SRTLMGRYR L  + S++ G   H  RAAINTPIQGGAADV M+AM+ I RS  LK+LGWKLLLQVHDEVILEGPEESA+EA+ E V CM+ PWD +GL+ LRV L VDAK AKTWY+AK
Sbjct: 1207 AFRAEEGNTLVVADYGQLELRLLAHITDCKSMITAFKEGGCFHSRTAVGMFDHVKEAVDKGEVLLEWDYSKGEPPKPLVKDVFASERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQNAKDTGFSRTLMGRYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQVHDEVILEGPEESAKEALAETVRCMQQPWDGIGLRELRVDLLVDAKSAKTWYDAK 1473          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: I2CP17_NANGC (DNA polymerase I n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP17_NANGC)

HSP 1 Score: 366 bits (940), Expect = 5.250e-119
Identity = 188/267 (70.41%), Postives = 214/267 (80.15%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAKHAKTWYEAK 792
            AF++E  + LIVADYGQLELRLLAH+T C+SMI AF  GGCFHSRTAVGMFEH   AV+SGEVLLEWDY+KGKPP PL+KD F +ERRKAKTLNFSIAYGKTA GLSKDWGVS +EA ++LEAWYADRPEV+ WQE     A  T  ++TLMGRYR L  +NS     + H+ RAAINTPIQGGAADVVM+AMLRI  S+ L RLGWKLLLQ+HDEVI+EGP+ES EEA+ EV  CME+P D  GL  L V L VDAK AK+WYEAK
Sbjct:  204 AFVSEPNQSLIVADYGQLELRLLAHITKCQSMIQAFKEGGCFHSRTAVGMFEHVRKAVESGEVLLEWDYAKGKPPAPLLKDKFGSERRKAKTLNFSIAYGKTAFGLSKDWGVSTKEAEAMLEAWYADRPEVKEWQEKAIAEAHRTSRTKTLMGRYRKLPEINSRTLRFQRHAERAAINTPIQGGAADVVMMAMLRIHNSQVLARLGWKLLLQIHDEVIVEGPDESREEALAEVKRCMEHPGDGYGLGELLVKLEVDAKIAKSWYEAK 470          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: A0A7S2USC7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USC7_9STRA)

HSP 1 Score: 353 bits (905), Expect = 1.110e-116
Identity = 177/267 (66.29%), Postives = 211/267 (79.03%), Query Frame = 1
Query:    4 FMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEHA---VDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAK-HAKTWYEAK 792
            F+A  G  LIVADYGQLELRLLA MTNC+SMI+AF AGG FHSRTA+GMF++    VD+G+ LLEWDYSKG PPKP++KD++A+ERRKAKTLNFSIAYGKTAHGLSKDWGVS +EA+ +LEAWY  RPEVR WQ+  K+ A+  G++RTLMGRYR L G  S + G   H+ RA+INTPIQGGAADV M+AM++I+ SETLK LGW LL+Q+HDEVILEGP E+AEEA  EV+HCM  PW   GL+   V L VD   H   WY+AK
Sbjct:    1 FLASPGNNLIVADYGQLELRLLASMTNCKSMIEAFDAGGDFHSRTALGMFDYIQEKVDNGDCLLEWDYSKGDPPKPMLKDLYASERRKAKTLNFSIAYGKTAHGLSKDWGVSTKEADEMLEAWYNSRPEVREWQQKTKEIAKKHGITRTLMGRYRQLPGAMSDQRGLVGHAERASINTPIQGGAADVAMMAMIKINNSETLKNLGWVLLMQIHDEVILEGPTETAEEAFDEVIHCMMEPWVH-GLRKTSVPLLVDGSWHHNNWYDAK 266          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: A0A7S2JAB8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JAB8_9EUKA)

HSP 1 Score: 357 bits (916), Expect = 2.990e-114
Identity = 182/267 (68.16%), Postives = 212/267 (79.40%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAKHAKTWYEAK 792
            AF AE+G  L+VADYGQLELRLLAHMT+C+SMI AF +GGCFHSRTA+GMF+H   AV+ G+VLLEWDYSKG+PP PL+KDVF +ERRKAKTLNFSIAYGKT HGLSKDWGVS  EA ++L+AWYADRPEVR WQ    KTA   G SRTLMGRYR L G+        +H  RAAINTPIQGGAAD++ LAML+I +S+ LK LG++LLLQ+HDEVILEGP+E A  A  EVV CM+NP+DE  L  L+V L VDAK A  W+EAK
Sbjct:  292 AFCAEKGNALVVADYGQLELRLLAHMTDCQSMIAAFKSGGCFHSRTAMGMFDHVRAAVERGDVLLEWDYSKGEPPAPLLKDVFGSERRKAKTLNFSIAYGKTIHGLSKDWGVSTTEAKAMLDAWYADRPEVRSWQRDTIKTAHKEGWSRTLMGRYRILPGIKDGNRAVVAHLERAAINTPIQGGAADIMTLAMLKIRKSDRLKELGYRLLLQIHDEVILEGPKEHALAAKEEVVACMQNPFDEA-LPSLKVDLVVDAKTAANWFEAK 557          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: A0A7S3TCT4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TCT4_EMIHU)

HSP 1 Score: 347 bits (889), Expect = 5.720e-112
Identity = 174/267 (65.17%), Postives = 210/267 (78.65%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAKHAKTWYEAK 792
            AF+A  GK L+VADYGQLELRLLAHMT C SM++AF  GG FHSRTA+GMF+H   AV+ G  LL+WDYS+G+PP PL+KD+F +ERR+AKTLNFSIAYGKTAHGLSKDWGVSI+EA  +L AWYADRPEV +WQ+    +AR+TG +RTL+GRYRTL G+       R+H  RAAINTPIQGGAAD++ LAM+++ RSE L+ +G++ LLQVHDEV+ EGP E A+EA  EVV CME P+DE  L  L V L VDA  A TWYEAK
Sbjct:  159 AFVAAPGKALVVADYGQLELRLLAHMTACTSMVEAFKLGGDFHSRTAMGMFDHVRRAVEDGTCLLDWDYSQGEPPAPLLKDLFGSERRRAKTLNFSIAYGKTAHGLSKDWGVSIDEAKEMLRAWYADRPEVLQWQKDTIASARATGATRTLLGRYRTLPGIQGRNGAVRAHMERAAINTPIQGGAADIMTLAMIKLQRSEKLREMGFRNLLQVHDEVMFEGPAELADEARAEVVACMERPFDE-NLPSLLVDLVVDANTASTWYEAK 424          
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Match: A0A7S4EZM0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZM0_CHRCT)

HSP 1 Score: 360 bits (924), Expect = 1.800e-111
Identity = 185/267 (69.29%), Postives = 214/267 (80.15%), Query Frame = 1
Query:    1 AFMAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFEH---AVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHGLSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRYRTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRLGWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAVDAKHAKTWYEAK 792
            AF A +   L+VADYGQLELRLLAHMT C+SMIDAF  GGCFHSRTA+GMF+H   AVD G+ LLEWDYSKG PP PL+KDVF +ERRKAKTLNFSIAYGKT HGL+KDWGVSI EA ++L+AWYADRPEV  WQE  K  AR TG +RTLMGR R L G+ + +   RSH  RAAINTPIQGGAAD++ LAML++ +SE LK LG+ L+LQVHDEV+LEGPEES EEAM+EVV CM  P+D+  L  L V LAVDAK A+TW+EAK
Sbjct:  653 AFTAVDKCTLVVADYGQLELRLLAHMTKCKSMIDAFEKGGCFHSRTAMGMFQHVREAVDRGDCLLEWDYSKGAPPAPLLKDVFGSERRKAKTLNFSIAYGKTPHGLAKDWGVSIAEAKAMLQAWYADRPEVLAWQEKTKADARKTGYTRTLMGRRRPLVGIATGKMNMRSHLERAAINTPIQGGAADIMTLAMLKLKKSEKLKELGYTLILQVHDEVMLEGPEESGEEAMKEVVACMREPFDK-HLPSLLVELAVDAKCARTWFEAK 918          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6394.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1XU43_9STRA4.050e-12973.03Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2F280_9STRA3.460e-12371.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WUE3_9STRA2.380e-12270.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5K9D2_9PHAE2.590e-12173.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMQ5_ECTSI2.520e-12073.03Pol1-like DNA polymerase n=1 Tax=Ectocarpus silicu... [more]
I2CP17_NANGC5.250e-11970.41DNA polymerase I n=1 Tax=Nannochloropsis gaditana ... [more]
A0A7S2USC7_9STRA1.110e-11666.29Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2JAB8_9EUKA2.990e-11468.16Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3TCT4_EMIHU5.720e-11265.17Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S4EZM0_CHRCT1.800e-11169.29Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6394contigP-wetherbeei_contig6394:25..3130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMQ5
PFAMsDNA_pol_A,DNA_pol_A_exo1
Model size1482
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02335
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Exons5
Evalue8.71e-124
EggNOG OGsCOG0749@1|root,KOG0950@2759|Eukaryota
EC2.7.7.7
Descriptionplastid DNA replication
Cds size789
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6394.1.2prot_P-wetherbeei_contig6394.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6394 712..3124 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.8282921-UTR-P-wetherbeei_contig6394:24..7111683186909.8282921-UTR-P-wetherbeei_contig6394:24..711Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6394 25..711 -
1683186909.889853-UTR-P-wetherbeei_contig6394:3124..31301683186909.889853-UTR-P-wetherbeei_contig6394:3124..3130Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6394 3125..3130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.8413434-CDS-P-wetherbeei_contig6394:711..8791683186909.8413434-CDS-P-wetherbeei_contig6394:711..879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6394 712..879 -
1683186909.8514752-CDS-P-wetherbeei_contig6394:1206..13361683186909.8514752-CDS-P-wetherbeei_contig6394:1206..1336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6394 1207..1336 -
1683186909.8612375-CDS-P-wetherbeei_contig6394:1686..18261683186909.8612375-CDS-P-wetherbeei_contig6394:1686..1826Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6394 1687..1826 -
1683186909.8719249-CDS-P-wetherbeei_contig6394:2316..25141683186909.8719249-CDS-P-wetherbeei_contig6394:2316..2514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6394 2317..2514 -
1683186909.880974-CDS-P-wetherbeei_contig6394:2971..31241683186909.880974-CDS-P-wetherbeei_contig6394:2971..3124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6394 2972..3124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6394.1.2

>prot_P-wetherbeei_contig6394.1.2 ID=prot_P-wetherbeei_contig6394.1.2|Name=mRNA_P-wetherbeei_contig6394.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
MAEEGKRLIVADYGQLELRLLAHMTNCRSMIDAFAAGGCFHSRTAVGMFE
HAVDSGEVLLEWDYSKGKPPKPLVKDVFAAERRKAKTLNFSIAYGKTAHG
LSKDWGVSIEEANSLLEAWYADRPEVRRWQESVKKTARSTGVSRTLMGRY
RTLSGVNSSEAGARSHSLRAAINTPIQGGAADVVMLAMLRIDRSETLKRL
GWKLLLQVHDEVILEGPEESAEEAMREVVHCMENPWDEVGLQPLRVHLAV
DAKHAKTWYEAK*
back to top

mRNA from alignment at P-wetherbeei_contig6394:25..3130-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6394.1.2 ID=mRNA_P-wetherbeei_contig6394.1.2|Name=mRNA_P-wetherbeei_contig6394.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3106bp|location=Sequence derived from alignment at P-wetherbeei_contig6394:25..3130- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCATGGCGGAGGAGGGCAAGCGGCTGATTGTGGCGGACTACGGCCA GTTGGAGCTGCGGCTGCTGGCCCACATGACCAACTGCCGCTCCATGATCG ACGCCTTTGCCGCGGGGGGTTGCTTCCACAGTCGCACCGCCGTCGGCATG TTCGAGCACGTCCGCAAGGCAAGCCGGGCCTCACTGACCACTCTGCCTGT TCCACCCTCTGCGGGAGAGAGGAATGGAGGAAGGGGGATCTTGCTTGAGA CGGTTTGAGGGGGGGAAGGAGAGGTGTTGTGGCAATGCTGCGTTTGATCT TGTTTCTGAAAAGGAAGCTGACCGGCAGGGAACCTCAAATGTTTTGGTGT GCTGCATGTCGCCGGAGTTCTGGTGCTTTGCGTGCAAGAGCTAGCTCTTT GCCGTACCTTGAACCCCCACCCTAGCAGCCGTGGAAAGCGGAGGAGCCTA CGAGAGTCGCCTCGTAGGTGCTAGCTGTGCGCTGAGAAGTGGTCCGACAC AAGACCCACCGCCGGCCTACCACACCTCACCCACGTGCACCGACCTGACT AGCCCGCCTGTTACACCTCACAAACCACTTCATACTGCCCACACGGTATT TCACGGCGCAACGCAGGCGGTGGATTCGGGTGAGGTGCTGCTGGAGTGGG ACTACTCGAAGGGGAAGCCACCCAAGCCGCTGGTGAAGGACGTCTTCGCG GCGGAGCGGCGCAAGGCCAAGACGCTCAACTTCTCCATCGCCTACGGGAA GACAGCGCACGGCCTCTCCAAGGACTGGGGTGTCTCCATCGAGGAGGCCA ACAGTCTCCTCGAGGTGAGGAAGGCAGAAAAGCAAAAAGGTGCTGAAAAG GGGAGAAAATGCAGAGCAGGCAGAGAAAATGGCAGAAAAATGGGCAGAGA AAGGACGAGGTAGAGAGGGAGGAAAAGACAGCAAGGAAGGAGGCAGGGAG GGAGTAAGGCGGGAGGCATTGAAGCTGTTGGAAAGACGAGAGGAGCCGTT AGAGGTGCAAAGAGGCGAAGAGTTTCTTGTTTGATCGCGTGTTGGATCGC TGGCTGGGTTTCTCTCTTGAATGTGCTGGTTGGTCAAAGAGGCGTCGAAA GGAGGAAGGCGGCAGATGGCGCAGGCAGCATGAACTGATTGGGTTCCGTC CACTGTTTGCTGTTTTGCCTGGTTCCTGCCCTTGTGATCCCCTTTCTGAC ATCTGTTTCTGTTGATCGCCTTTATTGCTGCGGCCGGGAACTCAACGTGG CATACAATGGCACCGCAAATTCTGACGGTCGGATGACCGGTGCACGGCGA ACAGGCGTGGTACGCGGACCGGCCGGAGGTTCGGAGGTGGCAGGAGTCCG TAAAGAAGACGGCGCGTTCGACGGGCGTCTCGCGGACCCTCATGGGCCGC TACCGCACCCTTAGCGGCGTCAACAGCTCCGAGGCCGGCGCCAGGTGCGG CGAAGGGAGCACCCAACGTGGCGGAAGTGGAGATTGGAGACGTGTTGGCC GATTGGGGGGAAGAGCTGGAGGAAGAGGAGGAGGGACGGGGTGGGGGAGG GAAAGCAGTAATGTTTTTCCTGAGGAAGGAGCAGACTGCCTAAAATTCTT GCTGCCGGGCAGGGGAACAGCGGGGCAGGCAAGGCACCAGAGAAGGGCCT CTATGTTTCGTTTCACTTGCGGCGGCCGGAAAAAGGGCCTCCCAACCTCT AAGCTGACCCGTTTTGTCATGTTTTCAGTTTCGCCATCAGAGTGACTGAA GATGCTATCCCCTCCTTTCCCTTTCGTGCCGCTGTACCATTCAGAAGCCA CTCGCTGCGGGCGGCCATCAACACGCCGATTCAGGGCGGCGCGGCGGACG TGGTAATGCTGGCCATGCTGCGCATCGACCGCTCCGAGACCCTCAAGCGG CTCGGCTGGAAGCTCCTGCTGCAGGTCCGCTTCCTTTTCTGTTTCGTCTG TCCTCTCCGTCATGTTCAAAGTTTGCAATTGATTGATACGGATCGTATCA GCGAAGTTGGAATGCGAATCGTTGTTGCGTTCGTTTATCGCTGCGTGAAC CTTTTCTTTTGTCTTATCCCTTTGGACTGTGCTGCTCTGTTACGGCCCTC TGCTACTTGCCGCCCTGCTGTCCGTCTGGTGCCTGACGCCTGCCGTCTGC CGCCTGCTTTTACTGCCGCTACTGCCGCCACTGCTCCCGCTGCCGCCTCC GCCGTCGCTGCCTCATGCCGTGGCCGCGGTCCGTGCTGCCTCTGCGTGCA GGTGCATGACGAGGTGATCCTAGAGGGTCCCGAGGAATCGGCAGAGGAGG CGATGCGGGAGGTGGTGCACTGCATGGAGAATCCGTGGGACGAGGTGGGG CTGCAGCCGCTGCGTGTGCATCTTGCCGTCGACGCCAAGCATGCCAAGAC CTGGTACGAGGCCAAGTGATTTGCGCCCGCTGGCGTTTTTGGTCGCTATT TGCGGTTGCGACCGCGATCGTGAATGACTGGTAGGAAGTGCAGGAGGAGA GGATGGCGGCTGGGGGGAAAGCGGCGGCGGCCCTCTGCAATTGGGCCGTG GCTGAGGAGAGTGAGCGAGTCCAAGAGCGGCGCCGATGCCGGCAGTGGCG GGCCGGCGTCAGCGAAGCGAAGCTGAGAGCGCAGCGTGCGCGCTGCTGAA AGGAACCGTAAGTAAGCCGCCAGCTGCTGATTGCCTGAACCTGCAGCGGC GGCGGGAGGCAGGCACCTGCGGCTCGCGGCGGCAACCACAGCCGCGGCAG CGCGAGGCGGTGGCGGTCAGTGCTGCCGCTGCTGGCGGTGTCTGGCGATA GAAGCCGCGGATTCATCATCGGGCACCACGAAATGACGAAACATTGGCAT CATCAGAAGTCGTGGCGAAGACTGCAGACGTTAGATAGGTTCGATCGCCT TGAGGTGAAAAGAAAGGCGCAAAGTATGTGCGTGCTGAACGCAGTCACAC TCACGAGCATACAAAAACGAAAACCCCACTTGTGGCGGGCAAGGCCGGGG CGGATGTGGCGTGGCAGACCTTTCCTTATTCGAAAGTGCTGCCGCGTGGT GCGTTGGCGATATTGGACATGTGCAGTGGCATGAATGCATCGTTTTTGAT ACAAAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6394:25..3130-

>mRNA_P-wetherbeei_contig6394.1.2 ID=mRNA_P-wetherbeei_contig6394.1.2|Name=mRNA_P-wetherbeei_contig6394.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig6394:25..3130- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAGGAGGGCAAGCGGCTGATTGTGGCGGACTACGGCCAGTTGGA
GCTGCGGCTGCTGGCCCACATGACCAACTGCCGCTCCATGATCGACGCCT
TTGCCGCGGGGGGTTGCTTCCACAGTCGCACCGCCGTCGGCATGTTCGAG
CACGCGGTGGATTCGGGTGAGGTGCTGCTGGAGTGGGACTACTCGAAGGG
GAAGCCACCCAAGCCGCTGGTGAAGGACGTCTTCGCGGCGGAGCGGCGCA
AGGCCAAGACGCTCAACTTCTCCATCGCCTACGGGAAGACAGCGCACGGC
CTCTCCAAGGACTGGGGTGTCTCCATCGAGGAGGCCAACAGTCTCCTCGA
GGCGTGGTACGCGGACCGGCCGGAGGTTCGGAGGTGGCAGGAGTCCGTAA
AGAAGACGGCGCGTTCGACGGGCGTCTCGCGGACCCTCATGGGCCGCTAC
CGCACCCTTAGCGGCGTCAACAGCTCCGAGGCCGGCGCCAGAAGCCACTC
GCTGCGGGCGGCCATCAACACGCCGATTCAGGGCGGCGCGGCGGACGTGG
TAATGCTGGCCATGCTGCGCATCGACCGCTCCGAGACCCTCAAGCGGCTC
GGCTGGAAGCTCCTGCTGCAGGTGCATGACGAGGTGATCCTAGAGGGTCC
CGAGGAATCGGCAGAGGAGGCGATGCGGGAGGTGGTGCACTGCATGGAGA
ATCCGTGGGACGAGGTGGGGCTGCAGCCGCTGCGTGTGCATCTTGCCGTC
GACGCCAAGCATGCCAAGACCTGGTACGAGGCCAAGTGA
back to top