mRNA_P-wetherbeei_contig6386.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6386.1.2
Unique NamemRNA_P-wetherbeei_contig6386.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: A0A835YRL3_9STRA (Flagellar inner arm dynein light chain Tctex1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL3_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.680e-67
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 1
Query:    4 DDAAEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVNVDNSAELE 351
            DDAA++SVEDVDTIVKNAI GCLTD  YN KKVTDWTN IVDNCL+ELQSLNKPFKY+ITC++MQKNGAGL+T+ATM WD +KD+YCQVPW+NQNMHCIVTVYG AVN+DN+ EL+
Sbjct:    5 DDAAKYSVEDVDTIVKNAIAGCLTDVTYNAKKVTDWTNHIVDNCLRELQSLNKPFKYIITCIIMQKNGAGLNTSATMFWDPEKDNYCQVPWENQNMHCIVTVYGCAVNIDNTHELD 120          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: D7G6A0_ECTSI (Flagellar inner arm dynein light chain Tctex1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6A0_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 2.390e-53
Identity = 81/117 (69.23%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 QDDAAEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVNVDNSAELE 351
            QDDAAEFS EDVDTIVKNAITGCLTD MYNPKK              ELQ LNKP+KY+ITC++MQKNGAG++T A+M WD  KD++CQVPW+NQNMHCIVTVYG AV++DN+ ELE
Sbjct:    4 QDDAAEFSSEDVDTIVKNAITGCLTDVMYNPKK--------------ELQPLNKPYKYIITCIIMQKNGAGVNTCASMVWDTTKDNFCQVPWENQNMHCIVTVYGCAVHIDNANELE 106          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: A0A6U1NWB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NWB1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.460e-52
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 QDDAAEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVNVDNSAELE 351
            QDDAAEFS EDV+T  KNAI  CL    Y  KKV DWTNTIVD CLKELQS+N+P+KYV+TC++MQKNGAG++T A+M WD  KD  C+V W+N  +HCIVTV+GLAV++DN  EL+
Sbjct:    4 QDDAAEFSQEDVETTAKNAIRSCLDKHNYQAKKVDDWTNTIVDTCLKELQSMNRPYKYVVTCIIMQKNGAGMNTTASMFWDTTKDGLCKVYWENHTIHCIVTVFGLAVHIDNQNELD 120          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: A0A482SIW0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIW0_9ARCH)

HSP 1 Score: 161 bits (407), Expect = 1.050e-48
Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    1 QDDAAEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVNVDNSAELE 351
            QDD+AEFS EDV+ IV+ AI   L DA YN KKV +WTN IV NCLK+LQ L +PFKY+ITC++MQK GAGL+T  +M WD  KD YC+VPWQN  M C VTVYGL+VN+D+  +++
Sbjct:   29 QDDSAEFSTEDVEGIVRLAIQNSLNDASYNSKKVNEWTNNIVTNCLKDLQGLGRPFKYIITCMIMQKTGAGLNTTTSMFWDTAKDGYCKVPWQNNTMTCTVTVYGLSVNIDDPQDVD 145          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: A0A7S3JST1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JST1_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.130e-46
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    7 DAAEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVNVDNSAELE 351
            D   F  ED+++IVKNAIT  L+D +YN KKV DW N+IVD CLKELQSLN+PFKYV+TC +MQKNGAGL T   + WD  KD    +PW+N +MH I+TV+GLA+NVDN AE++
Sbjct:    2 DDESFPQEDIESIVKNAITSTLSDHLYNSKKVNDWINSIVDACLKELQSLNRPFKYVVTCGIMQKNGAGLDTGVALIWDHSKDGLVCIPWENTSMHVIITVFGLALNVDNLAEMD 116          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: A0A7S2DAW6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAW6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.140e-44
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 1
Query:   19 FSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVNVDNSAELE 351
            FS EDVD+IVK AIT  L D MYN KKV D  N IVD CL+EL+ L +PF+Y++TC++MQKNGAG++TAATM WD  KD  C V W N  M+ +VTV+GLAVN+DNS EL+
Sbjct:    8 FSPEDVDSIVKLAITQNLADVMYNQKKVNDQINKIVDKCLEELRKLERPFRYIVTCIIMQKNGAGMNTAATMFWDTSKDGKCVVQWSNDTMNVVVTVFGLAVNIDNSGELD 118          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: A0A7R9W941_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W941_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.250e-40
Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 QDDAAEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVNVDNSAELE 351
            QD   EF VEDV+T++KNAI   L+DA Y   K  DW+N+++   LK L+SLN+P+KY IT +++QKNGAGL +A++  WDA KD  C+V W+N  MHC+VTV+G +VNVD+  EL+
Sbjct:    5 QDLGEEFVVEDVETVIKNAIGVVLSDASYISSKANDWSNSVISAALKGLESLNRPYKYCITVMIVQKNGAGLVSASSTYWDASKDGLCKVTWENSTMHCVVTVFGTSVNVDSPTELD 121          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: F0YFG3_AURAN (Uncharacterized protein DLC1 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFG3_AURAN)

HSP 1 Score: 137 bits (344), Expect = 1.610e-39
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    7 DAAEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVNVDNSAELE 351
            D  +F  ED++ +VKNAI+ CL++  Y  K V +  + IVD CLKELQ+LN+PFKY++TC++MQKNGAGL T A + WD  KD    +PW+N  M  +VTV+G A+NVDN AEL+
Sbjct:    2 DEDQFPQEDIENLVKNAISACLSEFQYQAKLVNNKIHAIVDACLKELQTLNRPFKYIVTCIIMQKNGAGLDTGAALFWDNAKDGLVCIPWENSQMSVVVTVFGTALNVDNLAELD 116          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: A0A5D6Y129_9STRA (Uncharacterized protein n=2 Tax=Pythium TaxID=4797 RepID=A0A5D6Y129_9STRA)

HSP 1 Score: 127 bits (320), Expect = 7.650e-36
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   13 AEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVN 327
            +EFS EDV  I K AI   L DA+YN KKV DW+NT+V   L  LQ+LNKPFKY +TC++MQK GAG++TAA+  WD   D YC V W+N  ++C+V VYG A++
Sbjct:    6 SEFSQEDVLPIAKTAIEAALKDAVYNRKKVLDWSNTLVATVLTGLQNLNKPFKYAVTCMIMQKTGAGMATAASCYWDPTLDGYCTVLWENSTIYCMVAVYGAAIS 110          
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Match: A0A0P1ABG3_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABG3_PLAHL)

HSP 1 Score: 126 bits (317), Expect = 2.190e-35
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   13 AEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQSLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCIVTVYGLAVN 327
            +EFS EDV  I K AI   L D +YN KKV DW+NT+V   L  LQSLNKPFKY +TC++MQK GAG++TAA   WD   D  C V W+N  ++CIVTVYG+A++
Sbjct:    6 SEFSQEDVLPIAKMAIEAALKDTVYNRKKVLDWSNTLVATVLAGLQSLNKPFKYAVTCLIMQKTGAGMATAAACFWDTTMDGNCTVLWENSTINCIVTVYGVAIS 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6386.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRL3_9STRA1.680e-6780.17Flagellar inner arm dynein light chain Tctex1 n=1 ... [more]
D7G6A0_ECTSI2.390e-5369.23Flagellar inner arm dynein light chain Tctex1 n=2 ... [more]
A0A6U1NWB1_9STRA1.460e-5264.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SIW0_9ARCH1.050e-4861.54Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3JST1_9STRA1.130e-4660.87Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2DAW6_9STRA1.140e-4462.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9W941_9STRA3.250e-4052.99Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
F0YFG3_AURAN1.610e-3953.04Uncharacterized protein DLC1 n=1 Tax=Aureococcus a... [more]
A0A5D6Y129_9STRA7.650e-3655.24Uncharacterized protein n=2 Tax=Pythium TaxID=4797... [more]
A0A0P1ABG3_PLAHL2.190e-3556.19Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6386contigP-wetherbeei_contig6386:1938..3462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G6A0
PFAMsTctex-1
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K10420
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.91e-54
EggNOG OGsKOG4081@1|root,KOG4081@2759|Eukaryota
Ec32 ortholog descriptionflagellar inner arm dynein light chain Tctex1
Ec32 orthologEc-10_001080.1
Descriptionintracellular transport of viral protein in host cell
Cds size354
COG categoryS
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.30443-CDS-P-wetherbeei_contig6386:1937..20241683186909.30443-CDS-P-wetherbeei_contig6386:1937..2024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6386 1938..2024 -
1683186909.3157923-CDS-P-wetherbeei_contig6386:2581..27491683186909.3157923-CDS-P-wetherbeei_contig6386:2581..2749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6386 2582..2749 -
1683186909.3252978-CDS-P-wetherbeei_contig6386:3363..34621683186909.3252978-CDS-P-wetherbeei_contig6386:3363..3462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6386 3364..3462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6386.1.2prot_P-wetherbeei_contig6386.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6386 1938..3462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6386.1.2

>prot_P-wetherbeei_contig6386.1.2 ID=prot_P-wetherbeei_contig6386.1.2|Name=mRNA_P-wetherbeei_contig6386.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
QDDAAEFSVEDVDTIVKNAITGCLTDAMYNPKKVTDWTNTIVDNCLKELQ
SLNKPFKYVITCVVMQKNGAGLSTAATMRWDADKDSYCQVPWQNQNMHCI
VTVYGLAVNVDNSAELE*
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mRNA from alignment at P-wetherbeei_contig6386:1938..3462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6386.1.2 ID=mRNA_P-wetherbeei_contig6386.1.2|Name=mRNA_P-wetherbeei_contig6386.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1525bp|location=Sequence derived from alignment at P-wetherbeei_contig6386:1938..3462- (Phaeothamnion wetherbeei SAG_119_79)
CAGGACGACGCCGCGGAGTTCTCGGTGGAGGACGTCGACACGATTGTGAA GAACGCCATAACCGGATGCCTCACCGACGCTATGTACAACCCGAAGAAGG TGCGTGCATCGTTGCTTTCTCTTCCTTCCCTTTTTGCATCCTCGACCTCG GGCGTTGTAAGAGTCCACAAGTCGATGCGTTTTCCGGGAGTCCTTCACCT CCCATTAACGCTGGTGAGCGTGGGCCTGCGCCTGGGCCATTTGGTTCCAC GGGAAAAGGTGGCTTTTTTGCGCGTGAGGAGCGTGACTCGGTGCCCTATA GCTCCTATGTCCCCTGCTTGCCTGCTTGTTAAAGTGAAGCAGCTGGGGAG CCGGCGCTACATTTATCTCAGTCCTCCTGCCTGTTGTTCTTCAGCCGGCC GGCCGGCACTTTTGCTTGCCGGCGTCGTCCAATTCGCTCGGCGGCTGCTT GAAATTTGCATCTCGGAGGATGCGGGAAAGCCTTAAGGCTAATGTCGTTT CGTGAACGATTTCTCACGTAGGCAGCCGACCATGCCCGCGCTTCTATAAG CAGCAGCAGCAACGGCAGCGGTGGTCTCCCTTCATTCCCTCAAAACTCCT TTCCCGTGTGTGTTCTTTGTGCGCCTCCATCGGCCGGCGGCCGAAAACTG GAAACGCCACCGAAAAAACGACGGGCGGGGAAAAAACAACACCAAACAAA AAACAAAGAGCAGGTGACGGACTGGACCAATACCATCGTGGACAACTGCC TGAAGGAGCTGCAGTCGCTCAACAAGCCCTTCAAGTACGTAATCACGTGC GTCGTCATGCAGAAGAACGGCGCCGGCCTCTCGACGGCCGCCACCATGCG GTGGGATGCCGACAAGGACAGCTACTGCCAGGTCAGAAAGATAAAAACAC AAAAGTAAGAGAGAAAGGAAAGAGAAGAGACCGTAAATTCCGCGGAAGAG CAAAGGCGTGGAAAGACCTGAGGCTGGAAGCAGAGAAGCAGAGATAAGTA CAGGCATGGTCGAAACAAGGGCACGGAGGAGTGAGGAACTATCCCCTTCT TTCTATAGAGTGCATAGGGCCTCGGCAGCCATGCTAGCGGGGCGTGCGAG GCATGTGCTGTTTGGTGCCTTTTTACTTCTGGTCCACCCTTTCTTTCATC CTTTACCGAAGCGCCTGCCGTCGCCGGACACCCCGCCAGCTTTCGGACCG GGTGGCTCGGGCTGGCGGGTTGTGCCTCCCCCCACCTTTCGGCTTCGTCG ACTTTCTTCTTTTTGCTCATCTGTTTCTTCTTGCACTGCCCGACAGCGTG ACCGTTACGTTAGTTAGCCGGGTTTTCCGCCCGGCCCGGCTCTGAAATGC GCTGTGTTCATCGCCAATGCTGCCTGTCGCTTACTCCCTTGTCGGTCAGC CCCCCTGGATTGCGATTGCTCTCCCGTGCCTTGACCAGGTACCATGGCAG AATCAAAATATGCACTGCATCGTCACCGTCTACGGCCTTGCAGTCAACGT CGACAACAGCGCAGAGCTGGAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6386:1938..3462-

>mRNA_P-wetherbeei_contig6386.1.2 ID=mRNA_P-wetherbeei_contig6386.1.2|Name=mRNA_P-wetherbeei_contig6386.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig6386:1938..3462- (Phaeothamnion wetherbeei SAG_119_79)
CAGGACGACGCCGCGGAGTTCTCGGTGGAGGACGTCGACACGATTGTGAA
GAACGCCATAACCGGATGCCTCACCGACGCTATGTACAACCCGAAGAAGG
TGACGGACTGGACCAATACCATCGTGGACAACTGCCTGAAGGAGCTGCAG
TCGCTCAACAAGCCCTTCAAGTACGTAATCACGTGCGTCGTCATGCAGAA
GAACGGCGCCGGCCTCTCGACGGCCGCCACCATGCGGTGGGATGCCGACA
AGGACAGCTACTGCCAGGTACCATGGCAGAATCAAAATATGCACTGCATC
GTCACCGTCTACGGCCTTGCAGTCAACGTCGACAACAGCGCAGAGCTGGA
ATAA
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