mRNA_P-wetherbeei_contig6385.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6385.1.1
Unique NamemRNA_P-wetherbeei_contig6385.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6385.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6385contigP-wetherbeei_contig6385:1341..3464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTL2
Model size2124
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-09
EggNOG OGs2CUZ5@1|root,2RPUY@2759|Eukaryota
DescriptionWD40 repeats
Cds size2124
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.2746108-CDS-P-wetherbeei_contig6385:1340..34641683186909.2746108-CDS-P-wetherbeei_contig6385:1340..3464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6385 1341..3464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6385.1.1prot_P-wetherbeei_contig6385.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6385 1341..3464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6385.1.1

>prot_P-wetherbeei_contig6385.1.1 ID=prot_P-wetherbeei_contig6385.1.1|Name=mRNA_P-wetherbeei_contig6385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=708bp
CTGTYTARSADSSAGGAGGENATVIYVGTDAGGILGIRLLPHQLPAAVPS
QRRSNHNPYRTVAQAMGLDAAMLSHRSAGARLRAGWAQSTLPMAGGTAAT
AGSPASSSAAGPGVPLFTAHFAGPGAGGGAFATTATPTTAAAAFSAAAAP
QVLSFDIRWQAHVESVASVAWVAEPAAMLSASLDGVAKVWSPDGHSLYGV
LDVNEAGVRRPVGSWRFPLAPPPVAAAIAEPVAAASASAAPSAISVASAA
SGTLAASAASTVLIAAGRGAHAAGNAGVMPGAGNLAAEAVAAAGSIEATA
RSEAVMEPSETSSKSAGQAGDAAGKPIFALTHTRPDGHDCGDSESGAGTG
AAGATASAATPSSPGQRKKTQSGNPMAVAAAVGAATATVSLVGDDTTGWR
SMTRSVHEMTETLELAAQQRSTLSAGAWRRRRRRRWSVDRSHGRSGGGGS
GGDGGEGDGSGEEDDSPRKKSAPPSFSGSSGGGKRLLPDRPGSRNRTQPS
AAVPRLVALSKPPQQLPATLADWNTEANSLDRAQSLWSNNANGGCNDGGG
GLDGTGGITMGASLYSQRTSCLAQSSWDGSLAAGRVPAGVAPRAALALLA
RQRRAAPAVLAVSRGGRLAAGNLHVHEDGTGRYDLKRAVPVVMASGPATT
TEATATRGRAPFAGAARDALASGGDGFGSDSAMMRRERRLEATQTGIIRK
LTHMGLL*
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mRNA from alignment at P-wetherbeei_contig6385:1341..3464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6385.1.1 ID=mRNA_P-wetherbeei_contig6385.1.1|Name=mRNA_P-wetherbeei_contig6385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2124bp|location=Sequence derived from alignment at P-wetherbeei_contig6385:1341..3464- (Phaeothamnion wetherbeei SAG_119_79)
TGCACAGGCACCTACACCGCGCGAAGCGCCGATAGCAGCGCTGGCGGTGC
CGGTGGCGAAAACGCTACGGTGATCTATGTAGGGACAGACGCCGGCGGCA
TCCTGGGCATCCGGCTGCTGCCGCACCAGCTGCCGGCGGCAGTGCCCAGC
CAGCGGCGGTCGAACCACAACCCATACCGGACCGTCGCACAGGCCATGGG
CCTCGACGCGGCTATGCTCAGCCACCGTTCCGCGGGCGCCCGCCTCCGGG
CCGGCTGGGCGCAATCCACCCTGCCAATGGCAGGAGGAACAGCAGCGACC
GCAGGCAGCCCTGCTTCCTCATCGGCCGCTGGTCCTGGCGTGCCTTTGTT
CACCGCTCATTTTGCCGGTCCCGGCGCTGGCGGCGGTGCCTTCGCTACGA
CAGCAACCCCCACAACAGCCGCCGCCGCCTTTTCCGCCGCTGCTGCGCCG
CAAGTCTTGTCGTTCGACATCCGTTGGCAGGCGCACGTCGAGTCCGTCGC
GTCGGTGGCATGGGTGGCCGAGCCGGCGGCGATGCTGTCGGCATCGCTCG
ACGGCGTCGCCAAGGTCTGGTCGCCGGACGGCCACTCCCTCTACGGCGTG
CTCGACGTCAACGAGGCCGGCGTCCGCCGTCCGGTTGGGTCGTGGCGCTT
CCCGCTGGCTCCACCGCCAGTCGCCGCCGCCATTGCGGAGCCGGTGGCGG
CAGCGTCAGCTTCAGCGGCGCCTTCAGCAATCTCGGTGGCTTCGGCGGCT
TCGGGGACTTTGGCGGCTTCGGCGGCTTCGACGGTTTTGATAGCGGCGGG
CCGCGGCGCTCATGCAGCAGGAAATGCCGGGGTGATGCCAGGAGCCGGTA
ACCTCGCCGCTGAGGCTGTGGCGGCAGCTGGCAGCATCGAAGCGACGGCG
AGATCAGAAGCAGTCATGGAACCCTCAGAAACAAGCAGCAAGAGTGCTGG
ACAGGCAGGCGATGCGGCGGGCAAGCCCATCTTCGCCTTGACGCACACGA
GGCCAGATGGCCACGACTGCGGCGACTCTGAGAGCGGCGCCGGCACCGGC
GCCGCTGGCGCCACCGCTTCCGCCGCCACTCCCTCCTCACCCGGACAGCG
AAAGAAGACGCAGTCGGGAAACCCAATGGCGGTGGCGGCGGCGGTGGGAG
CAGCAACGGCAACGGTGTCACTCGTCGGCGACGACACCACCGGCTGGCGG
AGCATGACGCGAAGCGTGCACGAGATGACTGAAACGCTCGAATTGGCCGC
CCAGCAACGCTCGACTCTCTCTGCGGGCGCCTGGCGGCGGCGGCGGCGGC
GGCGATGGTCTGTCGACAGATCCCATGGCCGCAGCGGCGGCGGTGGCAGC
GGCGGTGACGGTGGTGAAGGCGACGGCAGCGGCGAAGAGGACGACTCGCC
GCGGAAAAAGAGCGCGCCGCCTTCCTTCAGTGGCAGCAGCGGTGGCGGCA
AACGGCTGTTACCGGATCGGCCGGGCTCTCGTAACCGCACGCAGCCATCA
GCAGCGGTTCCTCGCCTAGTGGCTCTGAGCAAGCCGCCGCAGCAGCTACC
TGCGACCCTCGCGGACTGGAACACGGAAGCTAACAGCCTCGACCGCGCCC
AAAGCCTGTGGAGCAACAATGCCAACGGCGGCTGCAATGATGGTGGCGGC
GGCCTTGACGGCACTGGCGGCATTACCATGGGAGCCAGCCTCTACTCGCA
GCGCACGTCTTGCCTTGCGCAGTCATCGTGGGACGGCTCACTCGCCGCTG
GGCGCGTGCCGGCGGGCGTGGCGCCACGCGCCGCCCTGGCACTGCTGGCG
CGGCAGCGGCGGGCGGCGCCGGCAGTCCTCGCCGTGTCTCGCGGAGGCCG
GCTGGCGGCCGGCAACCTACACGTGCACGAGGACGGGACTGGCCGCTACG
ACCTCAAGCGAGCGGTTCCGGTGGTGATGGCGTCGGGGCCGGCGACGACG
ACGGAGGCAACGGCCACCAGGGGTCGGGCACCGTTCGCCGGTGCGGCTCG
CGACGCTTTGGCGAGCGGTGGCGATGGTTTTGGCAGCGACTCAGCGATGA
TGCGCCGGGAGCGTCGGCTCGAGGCGACTCAGACTGGCATCATCCGAAAG
CTCACGCACATGGGCTTGCTGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6385:1341..3464-

>mRNA_P-wetherbeei_contig6385.1.1 ID=mRNA_P-wetherbeei_contig6385.1.1|Name=mRNA_P-wetherbeei_contig6385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2124bp|location=Sequence derived from alignment at P-wetherbeei_contig6385:1341..3464- (Phaeothamnion wetherbeei SAG_119_79)
TGCACAGGCACCTACACCGCGCGAAGCGCCGATAGCAGCGCTGGCGGTGC
CGGTGGCGAAAACGCTACGGTGATCTATGTAGGGACAGACGCCGGCGGCA
TCCTGGGCATCCGGCTGCTGCCGCACCAGCTGCCGGCGGCAGTGCCCAGC
CAGCGGCGGTCGAACCACAACCCATACCGGACCGTCGCACAGGCCATGGG
CCTCGACGCGGCTATGCTCAGCCACCGTTCCGCGGGCGCCCGCCTCCGGG
CCGGCTGGGCGCAATCCACCCTGCCAATGGCAGGAGGAACAGCAGCGACC
GCAGGCAGCCCTGCTTCCTCATCGGCCGCTGGTCCTGGCGTGCCTTTGTT
CACCGCTCATTTTGCCGGTCCCGGCGCTGGCGGCGGTGCCTTCGCTACGA
CAGCAACCCCCACAACAGCCGCCGCCGCCTTTTCCGCCGCTGCTGCGCCG
CAAGTCTTGTCGTTCGACATCCGTTGGCAGGCGCACGTCGAGTCCGTCGC
GTCGGTGGCATGGGTGGCCGAGCCGGCGGCGATGCTGTCGGCATCGCTCG
ACGGCGTCGCCAAGGTCTGGTCGCCGGACGGCCACTCCCTCTACGGCGTG
CTCGACGTCAACGAGGCCGGCGTCCGCCGTCCGGTTGGGTCGTGGCGCTT
CCCGCTGGCTCCACCGCCAGTCGCCGCCGCCATTGCGGAGCCGGTGGCGG
CAGCGTCAGCTTCAGCGGCGCCTTCAGCAATCTCGGTGGCTTCGGCGGCT
TCGGGGACTTTGGCGGCTTCGGCGGCTTCGACGGTTTTGATAGCGGCGGG
CCGCGGCGCTCATGCAGCAGGAAATGCCGGGGTGATGCCAGGAGCCGGTA
ACCTCGCCGCTGAGGCTGTGGCGGCAGCTGGCAGCATCGAAGCGACGGCG
AGATCAGAAGCAGTCATGGAACCCTCAGAAACAAGCAGCAAGAGTGCTGG
ACAGGCAGGCGATGCGGCGGGCAAGCCCATCTTCGCCTTGACGCACACGA
GGCCAGATGGCCACGACTGCGGCGACTCTGAGAGCGGCGCCGGCACCGGC
GCCGCTGGCGCCACCGCTTCCGCCGCCACTCCCTCCTCACCCGGACAGCG
AAAGAAGACGCAGTCGGGAAACCCAATGGCGGTGGCGGCGGCGGTGGGAG
CAGCAACGGCAACGGTGTCACTCGTCGGCGACGACACCACCGGCTGGCGG
AGCATGACGCGAAGCGTGCACGAGATGACTGAAACGCTCGAATTGGCCGC
CCAGCAACGCTCGACTCTCTCTGCGGGCGCCTGGCGGCGGCGGCGGCGGC
GGCGATGGTCTGTCGACAGATCCCATGGCCGCAGCGGCGGCGGTGGCAGC
GGCGGTGACGGTGGTGAAGGCGACGGCAGCGGCGAAGAGGACGACTCGCC
GCGGAAAAAGAGCGCGCCGCCTTCCTTCAGTGGCAGCAGCGGTGGCGGCA
AACGGCTGTTACCGGATCGGCCGGGCTCTCGTAACCGCACGCAGCCATCA
GCAGCGGTTCCTCGCCTAGTGGCTCTGAGCAAGCCGCCGCAGCAGCTACC
TGCGACCCTCGCGGACTGGAACACGGAAGCTAACAGCCTCGACCGCGCCC
AAAGCCTGTGGAGCAACAATGCCAACGGCGGCTGCAATGATGGTGGCGGC
GGCCTTGACGGCACTGGCGGCATTACCATGGGAGCCAGCCTCTACTCGCA
GCGCACGTCTTGCCTTGCGCAGTCATCGTGGGACGGCTCACTCGCCGCTG
GGCGCGTGCCGGCGGGCGTGGCGCCACGCGCCGCCCTGGCACTGCTGGCG
CGGCAGCGGCGGGCGGCGCCGGCAGTCCTCGCCGTGTCTCGCGGAGGCCG
GCTGGCGGCCGGCAACCTACACGTGCACGAGGACGGGACTGGCCGCTACG
ACCTCAAGCGAGCGGTTCCGGTGGTGATGGCGTCGGGGCCGGCGACGACG
ACGGAGGCAACGGCCACCAGGGGTCGGGCACCGTTCGCCGGTGCGGCTCG
CGACGCTTTGGCGAGCGGTGGCGATGGTTTTGGCAGCGACTCAGCGATGA
TGCGCCGGGAGCGTCGGCTCGAGGCGACTCAGACTGGCATCATCCGAAAG
CTCACGCACATGGGCTTGCTGTAA
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