mRNA_P-wetherbeei_contig6354.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6354.1.1
Unique NamemRNA_P-wetherbeei_contig6354.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6354.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6354contigP-wetherbeei_contig6354:64..3477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3414
Hectar predicted targeting categoryother localisation
Exons1
Cds size2259
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.9468806-UTR-P-wetherbeei_contig6354:63..951683186906.9468806-UTR-P-wetherbeei_contig6354:63..95Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6354 64..95 +
1683186906.9757035-UTR-P-wetherbeei_contig6354:2354..34771683186906.9757035-UTR-P-wetherbeei_contig6354:2354..3477Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6354 2355..3477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.9635742-CDS-P-wetherbeei_contig6354:95..23541683186906.9635742-CDS-P-wetherbeei_contig6354:95..2354Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6354 96..2354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6354.1.1prot_P-wetherbeei_contig6354.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6354 96..2354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6354.1.1

>prot_P-wetherbeei_contig6354.1.1 ID=prot_P-wetherbeei_contig6354.1.1|Name=mRNA_P-wetherbeei_contig6354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=753bp
MRMRSRASSNVTQDSWTSDMSGCEGDGDIEPVDHCPANDAAAATGSDVTD
GVASPPPSKRRRDSSISSATPSLGPTPASPSAWPPEYGLTPLPGLSSVPV
TTHSLLDMTELARGPTYLSQLLAAGGKDAEDADGAVSGVVTNNSSGSYKA
MSSLDICMDGMAPMSIVEDGGGGYGSSGSGGGYGGDSSGGGGGGGGGCGG
AFGSFSGYALPDGGAVHPMEMDGAFLSEPRLSSRQGKGGSRRTAPNGGRA
TTAASWQLPQGQRSAEQQGRDTAESHYGCDGCGELRGCGCRDCGDGAEAA
MLWAVQNEQISALLEGGPRPLVAAPEAENAAERGAEAPARSSSSSSSSSG
DGGDGGGRGDGGGGLRGKGTGGDGAGEGGGVDDCVRDDDDGERAGGGASA
ASPTGSAAIETDGGAALAAAGTQEASNWDGFDLMDGRDDTTSPPETAHKT
AQSPSQSPQQPPRQQRLRQTPPPPESSAAASWARLLPSPVSSGGSSSLSM
PASPVYQPLPPLPALPPLPQLPALPALPQLSLLPQAEPLREQSFGPSAAV
LRAFLSSDMLGCNDDYDDNSCGSGGGGVGPGDKEDSVMVSPFSGGGTAVA
SAAVSAAALLGFDAAPPPLPMHAAEPTAASPATAECPTETDPASAAAATA
AEAQDQERTADCDRGGGDDDGGGEGGEGGGGSSSGAAALWGGFDDDAGPR
GWEEARWAFQPAMWQHFSFPCREEAAGIDRRSSVGAAGIKADERINGGRG
CI*
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mRNA from alignment at P-wetherbeei_contig6354:64..3477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6354.1.1 ID=mRNA_P-wetherbeei_contig6354.1.1|Name=mRNA_P-wetherbeei_contig6354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3414bp|location=Sequence derived from alignment at P-wetherbeei_contig6354:64..3477+ (Phaeothamnion wetherbeei SAG_119_79)
ACGCCGACGCCACCCACGAGTGGGGCGGCACCATGCGGATGCGGTCCCGC
GCGTCGTCCAACGTCACGCAGGATTCGTGGACGTCGGACATGAGCGGATG
TGAAGGTGACGGTGACATCGAGCCGGTGGACCACTGCCCGGCCAACGACG
CCGCCGCCGCCACGGGCAGTGACGTGACCGACGGTGTCGCGTCACCGCCG
CCGAGCAAGCGGCGGCGCGACTCCTCCATCTCCTCCGCAACGCCATCGCT
GGGGCCTACGCCAGCGTCGCCGTCCGCCTGGCCGCCCGAGTACGGGTTGA
CGCCGCTGCCGGGGCTTTCTAGCGTCCCTGTCACCACGCACTCACTGCTG
GACATGACGGAGCTGGCGCGCGGGCCGACATATCTCTCGCAGCTGCTCGC
AGCCGGCGGGAAAGACGCCGAAGACGCGGACGGAGCCGTCAGCGGCGTCG
TCACCAACAACAGCAGCGGCTCGTACAAGGCGATGAGCTCGCTCGACATT
TGCATGGACGGCATGGCGCCCATGAGCATCGTCGAGGACGGCGGTGGCGG
TTACGGCAGTAGCGGCAGCGGCGGTGGTTACGGCGGTGACAGCAGCGGCG
GTGGCGGCGGCGGCGGAGGCGGCTGTGGCGGCGCCTTCGGCAGCTTCAGC
GGTTACGCGCTGCCTGACGGCGGCGCCGTGCACCCAATGGAGATGGACGG
GGCGTTCCTTAGCGAGCCGCGGCTGTCAAGTCGTCAGGGAAAGGGTGGCA
GCCGCCGGACGGCACCGAACGGCGGTCGGGCGACCACCGCTGCCAGCTGG
CAGCTGCCGCAGGGCCAGCGCAGCGCGGAGCAGCAGGGACGGGACACCGC
TGAGTCCCACTACGGGTGCGACGGCTGCGGCGAACTCCGCGGCTGCGGTT
GCCGCGACTGTGGCGATGGCGCGGAGGCGGCCATGCTTTGGGCGGTGCAG
AACGAGCAGATCTCAGCACTGCTGGAGGGAGGCCCACGGCCGCTTGTGGC
TGCGCCGGAAGCTGAGAATGCGGCCGAACGCGGCGCTGAGGCTCCGGCCC
GCAGCAGCAGCAGCAGCAGCAGCTCCAGCGGTGATGGCGGCGATGGCGGT
GGTCGCGGCGATGGCGGTGGCGGCCTCCGCGGCAAAGGTACTGGCGGCGA
CGGCGCCGGCGAAGGCGGCGGTGTCGATGACTGTGTTCGCGACGATGATG
ATGGCGAGCGTGCCGGCGGCGGCGCGAGCGCCGCTAGTCCGACAGGCTCC
GCCGCCATAGAAACCGACGGCGGCGCCGCCCTAGCTGCGGCCGGTACGCA
GGAGGCTTCGAACTGGGACGGTTTCGACCTGATGGACGGACGTGATGACA
CGACCAGCCCGCCGGAGACCGCTCACAAAACGGCCCAGTCGCCGTCGCAG
TCGCCGCAGCAGCCGCCGCGCCAGCAGCGGCTGCGGCAGACGCCGCCCCC
GCCGGAGTCGTCGGCGGCCGCCTCCTGGGCCCGACTGCTCCCATCGCCTG
TTTCCAGCGGCGGTAGCTCTTCGCTGTCCATGCCGGCGTCGCCGGTGTAC
CAGCCGCTGCCGCCCTTGCCGGCGCTACCGCCACTGCCACAGCTGCCCGC
GCTGCCGGCGCTGCCGCAGCTGTCGCTGCTGCCGCAAGCGGAGCCGCTTC
GCGAGCAGAGTTTCGGGCCATCGGCCGCCGTCCTGCGCGCCTTCCTTTCG
TCAGACATGCTCGGCTGCAACGACGATTATGACGATAACAGTTGTGGCAG
CGGCGGCGGCGGCGTCGGTCCTGGCGACAAAGAGGATAGCGTGATGGTAT
CGCCATTTTCTGGCGGCGGCACGGCGGTGGCGTCTGCGGCAGTCTCGGCA
GCGGCTCTGCTCGGCTTTGACGCGGCCCCGCCGCCGCTGCCGATGCATGC
GGCGGAGCCGACGGCGGCATCGCCCGCAACGGCGGAGTGTCCCACTGAGA
CTGACCCAGCATCGGCGGCGGCGGCGACAGCAGCAGAGGCGCAAGACCAG
GAGCGGACCGCCGATTGTGACCGCGGCGGTGGCGACGATGACGGCGGCGG
CGAGGGCGGCGAGGGCGGCGGCGGGAGCAGCAGCGGCGCCGCGGCCCTGT
GGGGCGGCTTTGATGATGACGCCGGGCCGCGCGGCTGGGAGGAGGCGCGG
TGGGCGTTCCAGCCGGCGATGTGGCAGCACTTCAGCTTCCCATGCCGGGA
AGAGGCCGCCGGTATCGACCGCCGCTCATCCGTGGGCGCTGCCGGAATCA
AGGCGGACGAGCGGATCAATGGCGGCCGCGGGTGCATCTGAACCACTGTT
GCTGTAACCTGCGACCACACCCGCAGCCAAAGGAGACCACGACTACAGAT
ACTTACTGAAATTCCGCCGGAGCCGACGTTCGGGCCCGCTGCAGGCGATG
TCGGTGGCGGCAGCAGGGCATCAAGCCACCGCTGCCGCCACTGATCAGAC
GGCCCCTTGGTGACTCTGGCAGGAATACCGGCTGCGGCTCTGCCGGTCGG
CGGGCAGCGGCGGGTCTGCTAGCCGGCAGCAGCGGCAGCGGCGGCAACGG
CGGCGGCAACGGTGGCAACGGCGGCGGCAGCGGTGGCAGCATCCGGCCGC
GGTCTGCCGTACCATCTACGGATAAGGGGCATTCATTCATAAACAAGGTA
CCGGGACACGCGCAGAAATGCGCTTCTGCAGAAGAGGGGAACCGATCTGG
GTGGGGGCGGGGGGTAGTCACCCATCACTTTGTCACGTTTTTTGCCTTCA
CCATTACAACAACGAGTATATAGTCGTCGAGCCAGCCAGCCGGCGGGCCA
GCACAGCGTACGCAATACAAGGGAAATCACACGCATTCATGGAGGAGAAA
TCATTGGGGATATAGTTGCGGGGTGGGATCAGTACCGGGGCAGGTGTTGG
GAGTGAACCAGAGAAAATTTTGTTGCAAATACAAAAGGTAGAAAAAAGGA
GTAGGGGAACGGGAATGGGGTGGGGTTAGCACATGGCGGCGACGCCGGCG
CTCCGCCCTGGCTGCTGTGCGGGCCGGCGCTTGCAGCTGCCGCTGCTGCT
GCACCACCACGCCAGCAGTGGCGGCGGCAAAGCAGGCGGCAGACGGCGCC
GCCGGGCGAACGCATATACACGAACCAAGATGGGGAGGGAGTCGGGAGCT
GGAGACTGAGCGAAGGCAAGCAACTTTCCATGGGCTGGGGAGACGTAAGA
AACGCCAGCGCCGGCGGCGGATGGCTTCGTGGGAGAAAAGGTAAACTGGG
CAGATTGCCTCCCGCCGTGACGGCGGCGACGGCTGGACCGCTCGCCAGCG
CCCAAGTTAAGGGTTAACTGGACGGAGCGAACAGGGTCGAAAGAAAGCAC
TTGCGCGTTCGGACGGAGAGGGCGGCATTCGGAGATTTGGCATAGGAAAA
AGGGAGCCTGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6354:64..3477+

>mRNA_P-wetherbeei_contig6354.1.1 ID=mRNA_P-wetherbeei_contig6354.1.1|Name=mRNA_P-wetherbeei_contig6354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2259bp|location=Sequence derived from alignment at P-wetherbeei_contig6354:64..3477+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGATGCGGTCCCGCGCGTCGTCCAACGTCACGCAGGATTCGTGGAC
GTCGGACATGAGCGGATGTGAAGGTGACGGTGACATCGAGCCGGTGGACC
ACTGCCCGGCCAACGACGCCGCCGCCGCCACGGGCAGTGACGTGACCGAC
GGTGTCGCGTCACCGCCGCCGAGCAAGCGGCGGCGCGACTCCTCCATCTC
CTCCGCAACGCCATCGCTGGGGCCTACGCCAGCGTCGCCGTCCGCCTGGC
CGCCCGAGTACGGGTTGACGCCGCTGCCGGGGCTTTCTAGCGTCCCTGTC
ACCACGCACTCACTGCTGGACATGACGGAGCTGGCGCGCGGGCCGACATA
TCTCTCGCAGCTGCTCGCAGCCGGCGGGAAAGACGCCGAAGACGCGGACG
GAGCCGTCAGCGGCGTCGTCACCAACAACAGCAGCGGCTCGTACAAGGCG
ATGAGCTCGCTCGACATTTGCATGGACGGCATGGCGCCCATGAGCATCGT
CGAGGACGGCGGTGGCGGTTACGGCAGTAGCGGCAGCGGCGGTGGTTACG
GCGGTGACAGCAGCGGCGGTGGCGGCGGCGGCGGAGGCGGCTGTGGCGGC
GCCTTCGGCAGCTTCAGCGGTTACGCGCTGCCTGACGGCGGCGCCGTGCA
CCCAATGGAGATGGACGGGGCGTTCCTTAGCGAGCCGCGGCTGTCAAGTC
GTCAGGGAAAGGGTGGCAGCCGCCGGACGGCACCGAACGGCGGTCGGGCG
ACCACCGCTGCCAGCTGGCAGCTGCCGCAGGGCCAGCGCAGCGCGGAGCA
GCAGGGACGGGACACCGCTGAGTCCCACTACGGGTGCGACGGCTGCGGCG
AACTCCGCGGCTGCGGTTGCCGCGACTGTGGCGATGGCGCGGAGGCGGCC
ATGCTTTGGGCGGTGCAGAACGAGCAGATCTCAGCACTGCTGGAGGGAGG
CCCACGGCCGCTTGTGGCTGCGCCGGAAGCTGAGAATGCGGCCGAACGCG
GCGCTGAGGCTCCGGCCCGCAGCAGCAGCAGCAGCAGCAGCTCCAGCGGT
GATGGCGGCGATGGCGGTGGTCGCGGCGATGGCGGTGGCGGCCTCCGCGG
CAAAGGTACTGGCGGCGACGGCGCCGGCGAAGGCGGCGGTGTCGATGACT
GTGTTCGCGACGATGATGATGGCGAGCGTGCCGGCGGCGGCGCGAGCGCC
GCTAGTCCGACAGGCTCCGCCGCCATAGAAACCGACGGCGGCGCCGCCCT
AGCTGCGGCCGGTACGCAGGAGGCTTCGAACTGGGACGGTTTCGACCTGA
TGGACGGACGTGATGACACGACCAGCCCGCCGGAGACCGCTCACAAAACG
GCCCAGTCGCCGTCGCAGTCGCCGCAGCAGCCGCCGCGCCAGCAGCGGCT
GCGGCAGACGCCGCCCCCGCCGGAGTCGTCGGCGGCCGCCTCCTGGGCCC
GACTGCTCCCATCGCCTGTTTCCAGCGGCGGTAGCTCTTCGCTGTCCATG
CCGGCGTCGCCGGTGTACCAGCCGCTGCCGCCCTTGCCGGCGCTACCGCC
ACTGCCACAGCTGCCCGCGCTGCCGGCGCTGCCGCAGCTGTCGCTGCTGC
CGCAAGCGGAGCCGCTTCGCGAGCAGAGTTTCGGGCCATCGGCCGCCGTC
CTGCGCGCCTTCCTTTCGTCAGACATGCTCGGCTGCAACGACGATTATGA
CGATAACAGTTGTGGCAGCGGCGGCGGCGGCGTCGGTCCTGGCGACAAAG
AGGATAGCGTGATGGTATCGCCATTTTCTGGCGGCGGCACGGCGGTGGCG
TCTGCGGCAGTCTCGGCAGCGGCTCTGCTCGGCTTTGACGCGGCCCCGCC
GCCGCTGCCGATGCATGCGGCGGAGCCGACGGCGGCATCGCCCGCAACGG
CGGAGTGTCCCACTGAGACTGACCCAGCATCGGCGGCGGCGGCGACAGCA
GCAGAGGCGCAAGACCAGGAGCGGACCGCCGATTGTGACCGCGGCGGTGG
CGACGATGACGGCGGCGGCGAGGGCGGCGAGGGCGGCGGCGGGAGCAGCA
GCGGCGCCGCGGCCCTGTGGGGCGGCTTTGATGATGACGCCGGGCCGCGC
GGCTGGGAGGAGGCGCGGTGGGCGTTCCAGCCGGCGATGTGGCAGCACTT
CAGCTTCCCATGCCGGGAAGAGGCCGCCGGTATCGACCGCCGCTCATCCG
TGGGCGCTGCCGGAATCAAGGCGGACGAGCGGATCAATGGCGGCCGCGGG
TGCATCTGA
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