mRNA_P-wetherbeei_contig6347.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6347.4.1
Unique NamemRNA_P-wetherbeei_contig6347.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6347.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6347contigP-wetherbeei_contig6347:2719..3285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog10029.XP_007629680.1
Preferred nameZFP36L2
PFAMsTis11B_N,zf-CCCH
Model size568
Max annot lvl33208|Metazoa
KEGG koko:K18753
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000288,GO:0000956,GO:0000981,GO:0001655,GO:0001775,GO:0001822,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002694,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009611,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0014070,GO:0016070,GO:0016071,GO:0016310,GO:0017091,GO:0017145,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0023014,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0031086,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0033077,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034612,GO:0034641,GO:0034655,GO:0035019,GO:0035556,GO:0035925,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0045577,GO:0045595,GO:0045596,GO:0045598,GO:0045599,GO:0045619,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0048103,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051252,GO:0051254,GO:0051301,GO:0051384,GO:0051716,GO:0051726,GO:0060216,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0070371,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071364,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071774,GO:0072001,GO:0080090,GO:0090304,GO:0097011,GO:0097012,GO:0097159,GO:0098727,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902105,GO:1903311,GO:1903313,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000113,GO:2000736,GO:2000737,GO:2001141
Exons1
Evalue0.000629
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota,39S1Q@33154|Opisthokonta,3BBC9@33208|Metazoa,3D39A@33213|Bilateria,48334@7711|Chordata,48VGA@7742|Vertebrata,3J2F7@40674|Mammalia,3599A@314146|Euarchontoglires,4Q1PH@9989|Rodentia
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-07_003370.2
DescriptionZinc finger protein 36, C3H1 type-like
Cds size390
COG categoryS
BRITEko00000,ko00001,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.4190207-UTR-P-wetherbeei_contig6347:2718..28951683186906.4190207-UTR-P-wetherbeei_contig6347:2718..2895Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6347 2719..2895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.4299152-CDS-P-wetherbeei_contig6347:2895..32851683186906.4299152-CDS-P-wetherbeei_contig6347:2895..3285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6347 2896..3285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6347.4.1prot_P-wetherbeei_contig6347.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6347 2896..3285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6347.4.1

>prot_P-wetherbeei_contig6347.4.1 ID=prot_P-wetherbeei_contig6347.4.1|Name=mRNA_P-wetherbeei_contig6347.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MVPRSAKIPLCRYYEQNGMCNDGEKCRFRHGSRDARDIKTPTLAAGSIDL
PCRYLAAGRCDKGQRCPFRHSTYSVEENLRRKHFANKPAVPPSRPGGATV
APGVTPSRTVIAAAGQGGSESIRGGSSSSD
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mRNA from alignment at P-wetherbeei_contig6347:2719..3285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6347.4.1 ID=mRNA_P-wetherbeei_contig6347.4.1|Name=mRNA_P-wetherbeei_contig6347.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig6347:2719..3285+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCCAAGTTGTTCTGCTTTGGGGTATGCAAAGAAAGAGAGGATGGGAGA
GAGAGAATACATCATCCTCCCGTGACTCGAGCTAGCTTCGACCACAAGCA
ACCCTTTCCCTCGGGCACTACCCTCTTTTGGATAAAAACAAGAGGAGGGA
AGGGTAGCGGAGCCTCTCCCTCCCACCATGGTGCCGCGAAGCGCCAAAAT
TCCATTGTGTCGCTACTATGAGCAAAATGGCATGTGCAATGATGGCGAAA
AGTGTCGCTTTCGTCACGGGAGCCGAGATGCGCGAGACATCAAAACACCT
ACTCTCGCCGCAGGCTCCATCGACTTACCGTGTCGCTACCTCGCTGCGGG
GAGGTGCGACAAAGGTCAGCGCTGCCCCTTCAGGCATTCGACATATTCTG
TCGAGGAAAACCTTCGCCGAAAGCACTTTGCTAACAAACCAGCGGTTCCA
CCTTCGCGTCCTGGAGGAGCGACTGTGGCACCGGGAGTAACGCCCAGCAG
AACGGTCATCGCTGCAGCTGGTCAGGGCGGGAGCGAGAGCATTCGTGGCG
GAAGCTCGAGCAGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6347:2719..3285+

>mRNA_P-wetherbeei_contig6347.4.1 ID=mRNA_P-wetherbeei_contig6347.4.1|Name=mRNA_P-wetherbeei_contig6347.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig6347:2719..3285+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCCGCGAAGCGCCAAAATTCCATTGTGTCGCTACTATGAGCAAAA
TGGCATGTGCAATGATGGCGAAAAGTGTCGCTTTCGTCACGGGAGCCGAG
ATGCGCGAGACATCAAAACACCTACTCTCGCCGCAGGCTCCATCGACTTA
CCGTGTCGCTACCTCGCTGCGGGGAGGTGCGACAAAGGTCAGCGCTGCCC
CTTCAGGCATTCGACATATTCTGTCGAGGAAAACCTTCGCCGAAAGCACT
TTGCTAACAAACCAGCGGTTCCACCTTCGCGTCCTGGAGGAGCGACTGTG
GCACCGGGAGTAACGCCCAGCAGAACGGTCATCGCTGCAGCTGGTCAGGG
CGGGAGCGAGAGCATTCGTGGCGGAAGCTCGAGCAGCGAT
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