mRNA_P-wetherbeei_contig6273.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6273.2.1
Unique NamemRNA_P-wetherbeei_contig6273.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: A0A836CNI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.130e-32
Identity = 208/601 (34.61%), Postives = 274/601 (45.59%), Query Frame = 1
Query:   25 PEEGAADAERYGTRWVVTQASLNGLGRYMGYYLEVMALLKPAAAAAAAWERLCLLVDEYLYSVFSLFVPVRAGAALWAEYDEPGAPLPCDRDATSALRNFLERVMKARGLGLDAFARMGGRERRTRIAFPRPPAGXXXXXPTASQSPEGRMGLGSGGIVMGDSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRAWLGGSDSEAAAVAVRSEARGAFGSSGHGDGGSLHSSSSHGGSGGGSNAVGSLRSALRTGPGGISTGSLGATGGGGSPAPGSPSRPIPLPAAVDPEQGSGEANLFGLGERAVAAESCLFVARLLRAVYKRAAERRLLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGSQRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGAGRG-------------GGGVAALSVPLPPAAQRRAWAEAVQ-------------------------------------------AIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLE--RPCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTALL 1653
            PEE     +RYG++WVVTQA+LNG+ RY G+YL++M LL+P A  A  +  LC L D YLY VF+LF P    A L+   +E   PL  +++    L++F++RV  A                                 P A+                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        S    A                 G GGS     S GG    SN++  + + L   P    + ++ A  G   P P  P   +P P  V     +G+ +     ERAVAAESCLFV ++L A  + A   RLLPP   A    +V +    A QLR  +YR    LL   DRL  +V +  WAL  ++ + S YV++   R E + A +   G   R                     ++PLP AA+   + E +Q                                           AI++ LVEG++R + C+TEGRALM MDLQ +S  L+  RP  R    P R  +Y   +INAFY  + DL+ WVEQNW +Y    M AL+
Sbjct: 1279 PEE----VDRYGSKWVVTQAALNGIARYTGHYLQMMTLLRPVAGDA--FRGLCGLADLYLYCVFTLFAPPARVAGLYGVGEERHMPLVSEQEEFVDLKDFMQRVRAA-------------------------------LAPQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSPQRGAE---------------RGGGGSPAREGSLGGP---SNSL--VEALLPHKPLPPGSSAMAAMAGMAMPPP-VPRAVLPPPECV---ARAGD-DACAAPERAVAAESCLFVVQVLAAAQRHADAHRLLPPHERARAAAHVAATARAALQLRRFVYRCAGALLAAQDRLVAAVEATPWALTALRTESSDYVKACAARAERVYALLAPDGPLPRAPPXXXXXXXXXXXXXXXXXXALPLPAAARPVLYRECIQRSRQHRLKYTARAFARTQQLHRTAPLNVTRTPRCCRRRRCCAQAILDALVEGYARGRRCTTEGRALMCMDLQELSAELDAIRPL-RGAAAPARSHAYVFGWINAFYL-EDDLMRWVEQNWPQYHRHHMVALV 1815          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: A0A6H5KJN5_9PHAE (DUF2451 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN5_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.510e-30
Identity = 216/626 (34.50%), Postives = 275/626 (43.93%), Query Frame = 1
Query:   28 EEGAADAERYGTRWVVTQASLNGLGRYMGYYLEVMALLKPAAAAAAAWERLCLLVDEYLYSVFSLFVPVRA--GAALWAEYDEPGAPLPCDRDATSALRNFLERVMKARGLGLDAFARMGGRERRTRIAFPRPPAGXXXXXPTASQSPEGRMGLGSGGIVMGDSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRAWLGGSDSEAAAVAVRSEARGAFGSSGHGDGGSLHSSSSHGGSGGGSNAVGSLRSALRTGPGGISTGSLGATGGGGSPAPGSPSR-PIPLPAAVDPEQGSGEANLF--GLGERAVAAESCLFVARLLRAVYKR----------AAERRLLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGSQRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGA-------------------------------------------------------------------GRGGGGVAALSVPLPPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLERPCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTALLLC 1659
            EE  A+ +RYG+ WVVTQASLNG+ RY G+ L++MAL++PAA +A    R   LVD YLY   +LF P  A  G +  +       P    R   +AL++FL RV  +  L     A   G              G      + + SPE      +GG         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        ++ EAA     +                               AV SLR   R G  G         G  G    GS S               S E ++    LG+RAVA ESCLFV ++L+A  +R          AA   LLP    AA + YV  +  V  QLR   Y A AP LVG + +A +V  Q W  ++I+ND S YVE    RC  +R A+                                                                         G   G V ++   +P  A+R  W   V A++ +L+ GFSR + CSTEGRALMSMDLQA++ GLE P      K     ++  AY+NAFY+G  DL  W+++ WR Y   QM +LL C
Sbjct:   86 EELEAEEQRYGSGWVVTQASLNGVARYAGHALQIMALVRPAAPSAFGGLRQ--LVDLYLYCALTLFCPEWAIDGPSTASATRSWCRPRRSKRRGFTALKSFLSRV--SHDLSNPKSAAGSGNNN-----------GDGSRETSPAHSPE--RSSSAGGKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTEGEAAVSTTLA------------------------------GAVASLRD--RVGGSGXXXXXXAKGGLDGLLLAGSESLFXXXXXXXXXXXXXSLERSVEWRSLGQRAVAVESCLFVLQVLKAARRRTTGGAAAVFDAAGLGLLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIAAAVEGQSWTRKKIRNDASPYVEEWITRCLLIRGAIYPPSQTPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTADGTVGSV---IPARARRLVWRRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQALALGLEDPAATHAAK-----AHVHAYVNAFYFGDEDLHKWIKERWRSYPMYQMVSLLQC 654          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: A0A7S1UKD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKD0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.130e-29
Identity = 96/248 (38.71%), Postives = 131/248 (52.82%), Query Frame = 1
Query:  943 GSGEANLF-------GLGERAVAAESCLFVARLLRAVYKRAAERRLLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGSQRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGAGRGGGGVAALSVPLPPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLERPCGRPLLKPERG---RSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTALLL 1656
            G  EA LF       G+ ER   AE+   +  LL+  Y R     LL    L   + ++    A + QL L IYR+ A   +  D LA+ +    W ++ I+   +AYVE + +R   L    L+   AG   GGV A      P  +   W E  QA METLVEGFSR K+CSTEGRALMSMD+QA+  GL        L+P R    R +A AY+ AFYYG+AD+V W+E++  +Y+   M AL++
Sbjct:  106 GDKEAPLFSTADPTLGVRERICGAETATLLYALLQGAYTRVLGAGLLSTSELRRAKAFLDDAAAASDQLTLFIYRSAAFSSLAGDALAVHIEGLPWDIRGIREGANAYVEKLVDRAAALHN-FLNEPDAG---GGVIA------PPRKSLFWTEFCQACMETLVEGFSRVKNCSTEGRALMSMDVQALHQGLSA------LEPARAARSRVWADAYVKAFYYGEADVVGWIEEHHAQYQRRHMEALVV 337          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: D8LSH8_ECTSI (DUF2451 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.490e-27
Identity = 87/261 (33.33%), Postives = 120/261 (45.98%), Query Frame = 1
Query: 1057 LLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGSQRWALQQIQNDVSAYVESVCERCETLRAAVL-----------------------------------------------SSGGAGRGGGGVAA-------------LSVPLPPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLERPCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTALLLC 1659
            LLP    AA + YV  +  V  QLR   Y A AP LVG + +A +V  Q W  ++I+ND S YVE    RC  +R A+                                                ++ G  RGG G +A             +   +P  A+R  W   V A++ +L+ GFSR + CSTEGRALMSMDLQA++ GLE P        +  +++  AY+NAFY+G  DL  W+++ WR Y   QM +LL C
Sbjct:   52 LLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIATAVEGQSWTRKKIRNDASPYVEEWTTRCLLIRGAIYPPSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGIERPATNGRVRGGRGESAGSGGXXXXAADGTVGSVIPARARRLVWRRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQALALGLEDPAAT-----QAAKAHVHAYVNAFYFGDEDLHKWIKERWRSYPMYQMVSLLQC 307          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: W7TPS4_9STRA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPS4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.800e-26
Identity = 92/244 (37.70%), Postives = 124/244 (50.82%), Query Frame = 1
Query:  958 NLFGLGERAVAAESCLFVARLLRAVYKRAAERRLLPPRTLAACEVY------------VRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGSQRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGAGRGGGGVAAL-SVPLPPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLERPCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTAL 1650
            +L GL  RA+A ESC F   LL  V K         P  +A  + +            ++ V     QLR  IYR  AP LV A  +   V SQ W    I+ + + Y E +C  C  +   +   G   RG   +  L ++ +P  A+   W E  Q IM TL+EGFSR   CSTEGR+LMSMDLQAI  GL+       ++P RGR+Y   YI AFYYGQ D+++WVE+N++ Y    +  L
Sbjct: 1193 SLHGLSYRAIAVESCFF---LLEIVKK-------FKPYFVALIQEHNDDIDSQEGGDHLQFVGEAIAQLRTFIYRCTAPRLVRASSIVRLVESQVWHHNVIREEANPYTERICVLCRRIWEKI--RGPEERGSAKLDGLDNMYIPSEAKVLIWTEVAQCIMGTLLEGFSRIDKCSTEGRSLMSMDLQAIQVGLDEILR---VRPARGRAYVENYIKAFYYGQVDVMSWVEKNYKFYHYRHIAGL 1421          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: A0A7S4JFC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFC0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.980e-17
Identity = 74/241 (30.71%), Postives = 107/241 (44.40%), Query Frame = 1
Query:  988 AAESCLFVARLLRA----VYKRAAERRLLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVG--SQRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGAGRGGGGVAALSVPLPPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLER-------------PCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTALL 1653
            A+ SCLFVA LL A      +   E  LL    +     YV+S V + P    +  R      VGA+ +A  +      W    +    + Y++ VC  C  L   + S  GA             LP    +  W + V+    +++EGFS  ++CSTEGRALMSMDL A+S GLE               C      P+RG  Y   YI AFY+ + D++ W+ +N+  Y    + AL+
Sbjct:  794 ASYSCLFVAALLDASLDFAERSICEDNLLIDNGMENFRNYVQSAVDIVPAFVSITSRIACAHAVGANTVAQEIVRIGHGWDESSLNERANEYIDRVCSHCSWLWWHISSPSGA------------ELPTTTMKSLWGDIVELCFLSILEGFSMVRACSTEGRALMSMDLAALSSGLEAHAVMDRLPGTFHSECFPSSSTPDRGMLYVDMYIKAFYFPEKDVMKWITENYEDYHLGHLLALV 1022          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: F0YK23_AURAN (DUF2451 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK23_AURAN)

HSP 1 Score: 87.0 bits (214), Expect = 5.070e-17
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 1375 WAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLERPCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTALL 1653
            W  AVQA  E  VEGF+R   CSTEGRALMSMDLQ +   L++    P  +P RG +YA +YI A+Y+   DL AWV QN   Y   Q+ AL+
Sbjct:    5 WTHAVQAAFEAFVEGFARVGRCSTEGRALMSMDLQVLQFSLDKM--HPA-RPLRGAAYADSYIKAWYFDNRDLRAWVAQNDENYTKRQLAALV 94          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: UPI001F049E41 (syndetin-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F049E41)

HSP 1 Score: 94.7 bits (234), Expect = 1.380e-16
Identity = 71/250 (28.40%), Postives = 119/250 (47.60%), Query Frame = 1
Query:  910 IPLPAAVDPEQGSGEANLFGLGERAVAAESCLFVARLLRAVYKRAAERRLLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGSQRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGAGRGGGGVAALSVPLPPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLERPCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTALLLC 1659
            +P P      Q +    LFGL ER VA ES +F+A+   ++        L+P    A    +    V  A +LR  IY+AVA  +V  + +   + S +W +++I ++ ++YV+ + +  +   A V   G            SVP+P       W    + +  + V+GFS AK C+ EGRALM +D +     LE+      L+P   + +  AYI A+Y    D+  W+ ++ + Y   Q+T+L+ C
Sbjct:  750 VPAPCLSPLTQLNNAEGLFGLSERIVATESLVFLAKQFESLQPHL--ESLIPTTKRAFLSQFYSQTVCTAHELRKPIYQAVASRVVDFNMIVHLMSSVKWDIKEIMSEHNSYVDMLLKELQLFSARVSQIG-----------RSVPVPNEVLMVLWDHCSRRVNRSFVDGFSCAKKCTNEGRALMQLDYRQFLVKLEK---LTTLRPIPEKDFVEAYIKAYYLTAPDMERWIREH-KEYSTKQLTSLVNC 982          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: UPI00106A792E (syndetin-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A792E)

HSP 1 Score: 94.4 bits (233), Expect = 1.780e-16
Identity = 68/250 (27.20%), Postives = 118/250 (47.20%), Query Frame = 1
Query:  910 IPLPAAVDPEQGSGEANLFGLGERAVAAESCLFVARLLRAVYKRAAERRLLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGSQRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGAGRGGGGVAALSVPLPPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLERPCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTALLLC 1659
            +P P      Q      LFGL ER +A ES +F+A+   ++        L+P    A    +    V+ A +LR  IY+AVA  +V  + +   + + +W +++I ++ + YV+ +    +     +   G            S+P+P       W    + +  +LVEGFS AK CS EGRALM +D Q     L++      L+P   + +  AY+ A+Y  + D+  W+ ++ + Y   Q+T+L+ C
Sbjct:  695 VPSPCLSPLTQLENAEGLFGLSERIIATESLVFLAKQFESLQPHL--ESLIPMAKRAFLSQFYSQTVSTAHELRRPIYQAVAGRVVDFNMIIHLMSNVKWDIKEIMSEHNTYVDMLLRELQLFSMRISQIG-----------RSIPIPNEVLTILWDHCTRRVNRSLVEGFSCAKKCSNEGRALMQLDFQQFLIKLDKLTS---LRPIPEKEFVEAYVKAYYLTEPDMERWIREH-KEYSTKQLTSLVNC 927          
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Match: A0A7S4D4R9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4R9_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 5.270e-16
Identity = 66/181 (36.46%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  985 VAAESCLFVARLLRAVYKRAAERRLLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGSQRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGAGRGGGGVAALSVP---------LPPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLE 1500
            VAAESC F A  L A       +  +P      CE +V  +     QLR+ IYR VA  LV   R+   V  Q W  ++IQN+ S YV ++ E    L                    S+P         +P   +   W E  Q I  ++VEGFSR   CSTEGRALMSMDLQA+  GL+
Sbjct:   13 VAAESCRFAADALAAALPDILAQ--MPDTQKHRCEKHVEGLQETVRQLRVFIYRGVASHLVDGPRIVALVQQQDWLKKKIQNEESGYVHTIIEEASAL-------------------YSLPECRVRSDYYIPREVRDMLWEEVCQEIFASMVEGFSRVTKCSTEGRALMSMDLQALHLGLD 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6273.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNI9_9STRA2.130e-3234.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KJN5_9PHAE1.510e-3034.50DUF2451 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1UKD0_9STRA3.130e-2938.71Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
D8LSH8_ECTSI3.490e-2733.33DUF2451 domain-containing protein n=1 Tax=Ectocarp... [more]
W7TPS4_9STRA3.800e-2637.70Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A7S4JFC0_9STRA1.980e-1730.71Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F0YK23_AURAN5.070e-1750.54DUF2451 domain-containing protein (Fragment) n=1 T... [more]
UPI001F049E411.380e-1628.40syndetin-like n=1 Tax=Xenia sp. Carnegie-2017 TaxI... [more]
UPI00106A792E1.780e-1627.20syndetin-like n=1 Tax=Dendronephthya gigantea TaxI... [more]
A0A7S4D4R9_HETAK5.270e-1636.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6273contigP-wetherbeei_contig6273:1558..3503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog115417.EPrPW00000013285
PFAMsDUF2451,Vps54_N
Model size1662
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.28e-22
EggNOG OGsKOG2939@1|root,KOG2939@2759|Eukaryota,1MAZU@121069|Pythiales
Ec32 ortholog descriptionProtein of unknown function DUF2451, C-terminal
Ec32 orthologEc-09_001690.1
DescriptionSource PGD
Cds size1659
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.7037494-CDS-P-wetherbeei_contig6273:1559..17761683186901.7037494-CDS-P-wetherbeei_contig6273:1559..1776Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6273 1560..1776 -
1683186901.7159054-CDS-P-wetherbeei_contig6273:2061..35031683186901.7159054-CDS-P-wetherbeei_contig6273:2061..3503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6273 2062..3503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6273.2.1prot_P-wetherbeei_contig6273.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6273 1560..3503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6273.2.1

>prot_P-wetherbeei_contig6273.2.1 ID=prot_P-wetherbeei_contig6273.2.1|Name=mRNA_P-wetherbeei_contig6273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=553bp
LLAEDAVPPEEGAADAERYGTRWVVTQASLNGLGRYMGYYLEVMALLKPA
AAAAAAWERLCLLVDEYLYSVFSLFVPVRAGAALWAEYDEPGAPLPCDRD
ATSALRNFLERVMKARGLGLDAFARMGGRERRTRIAFPRPPAGGGGGGPT
ASQSPEGRMGLGSGGIVMGDSSEASAAQAAQAAAAAAAAAASAGGAAAVA
AASAAAAAAAAAAASGRAWLGGSDSEAAAVAVRSEARGAFGSSGHGDGGS
LHSSSSHGGSGGGSNAVGSLRSALRTGPGGISTGSLGATGGGGSPAPGSP
SRPIPLPAAVDPEQGSGEANLFGLGERAVAAESCLFVARLLRAVYKRAAE
RRLLPPRTLAACEVYVRSVVAVAPQLRLLIYRAVAPLLVGADRLALSVGS
QRWALQQIQNDVSAYVESVCERCETLRAAVLSSGGAGRGGGGVAALSVPL
PPAAQRRAWAEAVQAIMETLVEGFSRAKSCSTEGRALMSMDLQAISGGLE
RPCGRPLLKPERGRSYALAYINAFYYGQADLVAWVEQNWRRYRPAQMTAL
LLC
back to top

mRNA from alignment at P-wetherbeei_contig6273:1558..3503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6273.2.1 ID=mRNA_P-wetherbeei_contig6273.2.1|Name=mRNA_P-wetherbeei_contig6273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1946bp|location=Sequence derived from alignment at P-wetherbeei_contig6273:1558..3503- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGCTGAGGACGCCGTCCCGCCGGAGGAGGGCGCCGCCGACGCCGA GCGCTACGGCACGCGCTGGGTGGTGACTCAGGCGTCGCTGAACGGTCTCG GCCGCTACATGGGCTATTACCTCGAAGTCATGGCGCTGCTCAAGCCGGCC GCCGCCGCCGCGGCCGCCTGGGAGCGCCTCTGCCTGCTTGTGGACGAGTA CCTGTATTCCGTCTTTTCGCTCTTCGTTCCTGTGCGGGCCGGGGCGGCGC TCTGGGCGGAGTACGACGAGCCTGGCGCGCCGCTGCCGTGCGATCGGGAC GCTACGTCCGCGCTGAGAAATTTCCTCGAACGGGTGATGAAGGCGCGGGG GCTCGGCCTCGATGCGTTTGCGCGCATGGGCGGACGAGAACGACGCACTC GGATTGCTTTTCCGCGACCGCCGGCCGGTGGCGGCGGCGGCGGGCCCACT GCCTCCCAGAGTCCGGAAGGGCGTATGGGCCTCGGCAGCGGGGGCATTGT CATGGGGGACAGTTCCGAAGCAAGCGCCGCTCAAGCGGCACAAGCCGCCG CTGCAGCGGCCGCCGCGGCTGCAAGTGCAGGCGGAGCGGCCGCTGTGGCA GCCGCTTCGGCAGCGGCTGCTGCAGCGGCGGCGGCTGCTGCATCCGGACG CGCCTGGCTGGGGGGTTCAGATTCGGAAGCGGCGGCGGTGGCGGTGCGCA GCGAGGCGCGTGGCGCCTTCGGCAGCAGCGGCCACGGCGACGGCGGCAGC CTCCATAGCAGCAGCAGCCACGGCGGCAGCGGCGGTGGCAGCAACGCGGT CGGCTCCCTGCGGTCGGCGCTCCGGACAGGTCCCGGAGGCATCTCGACCG GCAGCCTAGGCGCGACGGGAGGTGGCGGGTCCCCGGCGCCGGGATCGCCG TCCCGCCCAATTCCGCTGCCCGCGGCCGTGGATCCCGAGCAGGGCAGCGG CGAGGCGAACCTCTTCGGGCTCGGCGAACGCGCCGTCGCCGCCGAGAGCT GTTTGTTCGTGGCGCGGCTTTTGCGCGCCGTCTACAAGCGCGCCGCCGAG CGACGGCTGCTGCCGCCGCGGACGCTGGCGGCGTGCGAAGTCTATGTCCG ATCCGTCGTGGCCGTGGCCCCGCAACTGCGGCTGCTAATCTACCGCGCGG TGGCGCCCTTGCTGGTTGGCGCTGACCGGCTGGCGCTGTCGGTCGGTAGC CAGCGCTGGGCGCTGCAGCAGATCCAGAACGACGTCAGCGCGTACGTCGA GTCCGTTTGCGAGCGCTGTGAGACGCTGAGGGCGGCGGTGCTGTCGAGCG GCGGCGCCGGGCGGGGTGGCGGCGGTGTGGCAGCGCTGTCGGTGCCGCTG CCGCCGGCGGCGCAGCGGCGGGCATGGGCGGAGGCGGTGCAGGCTATCAT GGAGACGCTCGTCGAAGGGTTCTCCCGCGCCAAATCGTGCAGGTATCGCC GGATTTGCAGCGCTGCTATGGTTTGATTTTCGTTCCTGTTATGGTTTGAC GAGAAATAAATGGCTTGTGGACGGCTTACACGTGCGCAGTTCTTCAGTTG TCGAGTATGAGCATTATCTTTATATCGGCCGTGCCGTCCCCAACCCCGCA TCACGGTGTCGCATGCCCTCTCCGTCCGCTTACCTCCTGCAACACCCAAA CCTGAAGCCGCTCTCTCTATCTCTTTCTTTCTCTTCCTGCCTGGACTCTT GATGGGTTCTGCGTCGTTTCCGCGCAGCACGGAGGGCCGCGCCTTGATGA GCATGGACCTGCAGGCCATCTCCGGCGGCCTCGAGCGGCCTTGCGGTCGT CCGCTTCTCAAGCCCGAGCGCGGCCGCAGCTATGCGCTGGCCTACATCAA CGCTTTCTACTACGGCCAGGCCGACCTGGTCGCCTGGGTGGAGCAGAACT GGCGGCGGTACCGCCCGGCGCAGATGACGGCGCTGCTCCTCTGCGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6273:1558..3503-

>mRNA_P-wetherbeei_contig6273.2.1 ID=mRNA_P-wetherbeei_contig6273.2.1|Name=mRNA_P-wetherbeei_contig6273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1659bp|location=Sequence derived from alignment at P-wetherbeei_contig6273:1558..3503- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGCTGAGGACGCCGTCCCGCCGGAGGAGGGCGCCGCCGACGCCGA
GCGCTACGGCACGCGCTGGGTGGTGACTCAGGCGTCGCTGAACGGTCTCG
GCCGCTACATGGGCTATTACCTCGAAGTCATGGCGCTGCTCAAGCCGGCC
GCCGCCGCCGCGGCCGCCTGGGAGCGCCTCTGCCTGCTTGTGGACGAGTA
CCTGTATTCCGTCTTTTCGCTCTTCGTTCCTGTGCGGGCCGGGGCGGCGC
TCTGGGCGGAGTACGACGAGCCTGGCGCGCCGCTGCCGTGCGATCGGGAC
GCTACGTCCGCGCTGAGAAATTTCCTCGAACGGGTGATGAAGGCGCGGGG
GCTCGGCCTCGATGCGTTTGCGCGCATGGGCGGACGAGAACGACGCACTC
GGATTGCTTTTCCGCGACCGCCGGCCGGTGGCGGCGGCGGCGGGCCCACT
GCCTCCCAGAGTCCGGAAGGGCGTATGGGCCTCGGCAGCGGGGGCATTGT
CATGGGGGACAGTTCCGAAGCAAGCGCCGCTCAAGCGGCACAAGCCGCCG
CTGCAGCGGCCGCCGCGGCTGCAAGTGCAGGCGGAGCGGCCGCTGTGGCA
GCCGCTTCGGCAGCGGCTGCTGCAGCGGCGGCGGCTGCTGCATCCGGACG
CGCCTGGCTGGGGGGTTCAGATTCGGAAGCGGCGGCGGTGGCGGTGCGCA
GCGAGGCGCGTGGCGCCTTCGGCAGCAGCGGCCACGGCGACGGCGGCAGC
CTCCATAGCAGCAGCAGCCACGGCGGCAGCGGCGGTGGCAGCAACGCGGT
CGGCTCCCTGCGGTCGGCGCTCCGGACAGGTCCCGGAGGCATCTCGACCG
GCAGCCTAGGCGCGACGGGAGGTGGCGGGTCCCCGGCGCCGGGATCGCCG
TCCCGCCCAATTCCGCTGCCCGCGGCCGTGGATCCCGAGCAGGGCAGCGG
CGAGGCGAACCTCTTCGGGCTCGGCGAACGCGCCGTCGCCGCCGAGAGCT
GTTTGTTCGTGGCGCGGCTTTTGCGCGCCGTCTACAAGCGCGCCGCCGAG
CGACGGCTGCTGCCGCCGCGGACGCTGGCGGCGTGCGAAGTCTATGTCCG
ATCCGTCGTGGCCGTGGCCCCGCAACTGCGGCTGCTAATCTACCGCGCGG
TGGCGCCCTTGCTGGTTGGCGCTGACCGGCTGGCGCTGTCGGTCGGTAGC
CAGCGCTGGGCGCTGCAGCAGATCCAGAACGACGTCAGCGCGTACGTCGA
GTCCGTTTGCGAGCGCTGTGAGACGCTGAGGGCGGCGGTGCTGTCGAGCG
GCGGCGCCGGGCGGGGTGGCGGCGGTGTGGCAGCGCTGTCGGTGCCGCTG
CCGCCGGCGGCGCAGCGGCGGGCATGGGCGGAGGCGGTGCAGGCTATCAT
GGAGACGCTCGTCGAAGGGTTCTCCCGCGCCAAATCGTGCAGCACGGAGG
GCCGCGCCTTGATGAGCATGGACCTGCAGGCCATCTCCGGCGGCCTCGAG
CGGCCTTGCGGTCGTCCGCTTCTCAAGCCCGAGCGCGGCCGCAGCTATGC
GCTGGCCTACATCAACGCTTTCTACTACGGCCAGGCCGACCTGGTCGCCT
GGGTGGAGCAGAACTGGCGGCGGTACCGCCCGGCGCAGATGACGGCGCTG
CTCCTCTGC
back to top