mRNA_P-wetherbeei_contig6235.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6235.1.1
Unique NamemRNA_P-wetherbeei_contig6235.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6235.1.1 vs. uniprot
Match: A0A835Z6D5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.440e-24
Identity = 47/96 (48.96%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    1 LIIAQSLAFVLSLALAEGCQRLLRVDAAMFRPLKLAIAFPNAGTVPLLLMESLCEQSLVNADYD-SPAQCFGEATGIIFIYLIGWHIWFFMWGFYK 285
            L++A ++   +S  +   C++LL V+  +F+ +K+A+ F N G++PLL MESLC+Q +VNADYD S ++CF  AT +IF+YLI WHIWF+ WGFY+
Sbjct:   33 LLVADTVIRAISWVVITACEKLLPVEPRLFKAVKIAVLFCNVGSIPLLYMESLCDQDIVNADYDGSASECFAAATSMIFVYLITWHIWFYSWGFYE 128
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BLAST of mRNA_P-wetherbeei_contig6235.1.1 vs. uniprot
Match: A0A836C7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7K1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.430e-21
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:    1 LIIAQSLAFVLSLALAEGCQRLLRVDAAMFRPLKLAIAFPNAGTVPLLLMESLCEQSLVNADYDSPAQ-CFGEATGIIFIYLIGWHIWFFMWGFYK 285
            L+ A S   +LS A+A   +RLL V+  +++ +K AI F N GT+PLL ++SLC+Q+++NA++D  A  CF   T +IF+YLI WH+WF+ WGF+K
Sbjct:   78 LLFADSALRLLSWAVAAAVERLLPVEPRLYKAVKFAILFTNVGTIPLLYLDSLCDQAVINAEFDGSASLCFESGTNMIFVYLITWHLWFYSWGFFK 173
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BLAST of mRNA_P-wetherbeei_contig6235.1.1 vs. uniprot
Match: A0A6H5J8G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.360e-18
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   64 LLRVDA-AMFRPLKLAIAFPNAGTVPLLLMESLCEQSLVNADYDSPA-QCFGEATGIIFIYLIGWHIWFFMWGFY 282
            L+R DA A FRP++LAIAFPNA  VPL+L ++LCEQ L+N+D+D    +CF +ATG+IFI+L  W +WF+ WG Y
Sbjct:  116 LMRRDARAKFRPVQLAIAFPNALVVPLVLFDALCEQDLINSDFDGDNNECFDQATGMIFIFLAVWQVWFYAWGVY 190
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BLAST of mRNA_P-wetherbeei_contig6235.1.1 vs. uniprot
Match: D7FW26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW26_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.590e-18
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   76 DAAMFRPLKLAIAFPNAGTVPLLLMESLCEQSLVNADYDSP-AQCFGEATGIIFIYLIGWHIWFFMWGFYK 285
            D   FRP  LAIAFPN+   PLLL+++LCEQ  +N+D+D    +CF +ATG+IFIY++ W +WF+ WGFY 
Sbjct:  106 DRRAFRPAALAIAFPNSAGFPLLLVDALCEQDYINSDFDDDEVECFTQATGMIFIYVVVWQVWFYSWGFYA 176
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BLAST of mRNA_P-wetherbeei_contig6235.1.1 vs. uniprot
Match: A0A6H5JAX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.200e-15
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   76 DAAMFRPLKLAIAFPNAGTVPLLLMESLCEQSLVNADYDSPA-QCFGEATGIIFIYLIGWHIWFFMWGFYK 285
            D   FRP  LAI F N+   PLLLM +LCEQ  V +DY+  A +CF +ATG+IFIY++ W ++FF WGFY 
Sbjct:  106 DRRAFRPAGLAITFANSAGFPLLLMNALCEQDYVRSDYNDDALECFTQATGMIFIYVVVWQMYFFGWGFYA 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6235.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z6D5_9STRA2.440e-2448.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C7K1_9STRA1.430e-2146.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5J8G0_9PHAE1.360e-1857.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW26_ECTSI1.590e-1853.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAX8_9PHAE2.200e-1553.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6235contigP-wetherbeei_contig6235:150..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FW26
PFAMsMem_trans
Model size288
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.6e-19
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
Cds size288
COG categoryB
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.1914086-CDS-P-wetherbeei_contig6235:149..3971683186899.1914086-CDS-P-wetherbeei_contig6235:149..397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6235 150..397 +
1683186899.200903-CDS-P-wetherbeei_contig6235:646..6861683186899.200903-CDS-P-wetherbeei_contig6235:646..686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6235 647..686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6235.1.1prot_P-wetherbeei_contig6235.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6235 150..686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6235.1.1

>prot_P-wetherbeei_contig6235.1.1 ID=prot_P-wetherbeei_contig6235.1.1|Name=mRNA_P-wetherbeei_contig6235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
LIIAQSLAFVLSLALAEGCQRLLRVDAAMFRPLKLAIAFPNAGTVPLLLM
ESLCEQSLVNADYDSPAQCFGEATGIIFIYLIGWHIWFFMWGFYK*
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mRNA from alignment at P-wetherbeei_contig6235:150..686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6235.1.1 ID=mRNA_P-wetherbeei_contig6235.1.1|Name=mRNA_P-wetherbeei_contig6235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig6235:150..686+ (Phaeothamnion wetherbeei SAG_119_79)
CTCATCATCGCCCAGTCTCTGGCCTTCGTCCTATCCCTGGCCCTTGCGGA
GGGCTGCCAGCGCCTCCTTCGCGTCGACGCCGCGATGTTTCGGCCGCTCA
AGCTGGCGATCGCTTTCCCCAACGCGGGAACGGTCCCGCTGCTGCTGATG
GAGTCGCTATGCGAGCAGAGCCTCGTCAACGCGGACTACGACTCGCCGGC
GCAGTGCTTCGGGGAGGCCACCGGCATCATCTTCATATACCTCATTGGGT
GAGCTGCACCCATAATTTTGTGCACAACTGCTAACCCTCTCCTTTTCGGT
CAGGCATCAGCTGCCTTTCCGTTACTCATCCGATTTTATTCCTGCCGTTG
GTGTTGGGTCCGAAATCTCTCCTCCACTTCGCACAACTAACTGCTAACCC
TCTCCTTTCCAATCAAGCATCAGCTGCCTCTCTTATACACATCTGAACTT
GGTTCTGCCTTTGGTGTTCTGTCCGAAATCTTCCCTCCATTTCGCAGCTG
GCACATATGGTTCTTTATGTGGGGTTTCTACAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6235:150..686+

>mRNA_P-wetherbeei_contig6235.1.1 ID=mRNA_P-wetherbeei_contig6235.1.1|Name=mRNA_P-wetherbeei_contig6235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig6235:150..686+ (Phaeothamnion wetherbeei SAG_119_79)
CTCATCATCGCCCAGTCTCTGGCCTTCGTCCTATCCCTGGCCCTTGCGGA
GGGCTGCCAGCGCCTCCTTCGCGTCGACGCCGCGATGTTTCGGCCGCTCA
AGCTGGCGATCGCTTTCCCCAACGCGGGAACGGTCCCGCTGCTGCTGATG
GAGTCGCTATGCGAGCAGAGCCTCGTCAACGCGGACTACGACTCGCCGGC
GCAGTGCTTCGGGGAGGCCACCGGCATCATCTTCATATACCTCATTGGCT
GGCACATATGGTTCTTTATGTGGGGTTTCTACAAGTGA
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