mRNA_P-wetherbeei_contig615.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig615.4.1
Unique NamemRNA_P-wetherbeei_contig615.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig615.4.1 vs. uniprot
Match: A0A508BCE5_9GAMM (Uncharacterized protein n=2 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A508BCE5_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 6.750e-7
Identity = 55/149 (36.91%), Postives = 72/149 (48.32%), Query Frame = 1
Query:    4 LIIAASLGYEGILQDLLAGGASTDSRDARRATALHWAC-----ADDHVACCRALIAAGADVTAGTE--RSPLHEAAAGGHLLAVKE-------LLKSGAAVDVRDGAGRSPLHAAAGCADGSAGVVRALLAAGADPAAGTRSGETPLHV 408
            L +A   G+EG ++ L   G + +  D      +H+A      A   V   R LI  GAD+ A  +  R+ LHEA   G     K        LLK+  AVD++D  GR+P+  AA  A     VVRALLAAGADP    R G  P+ V
Sbjct:   77 LHLACERGHEGAVRLLCHAGVAVNGSDIEGRRPIHYAIGPEVSASQSVQVLRVLIEYGADINARNKSGRTALHEAMFSGSSFWHKPVDEKVACLLKARCAVDIQDKQGRTPMFLAAVTAHHR--VVRALLAAGADPELADRDGYRPVDV 223          
BLAST of mRNA_P-wetherbeei_contig615.4.1 vs. uniprot
Match: R1DTG2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DTG2_EMIHU)

HSP 1 Score: 57.0 bits (136), Expect = 8.680e-7
Identity = 58/146 (39.73%), Postives = 73/146 (50.00%), Query Frame = 1
Query:    4 LIIAASLGYEGILQDLLAGGASTDSRDARRATALHWACADDHVACCRALIAAGA------------DVTAGTERSPLHEAAA---GGHLLAVKELLKSGAAVDVR--DGAGRSPLHAAAGCADGSAGVVRALLAAGADPAAGTRSG 390
            L + A  G  G +++LLAGGA  D+ D    TALH AC  +       L+ AGA            D      R+  H AAA      + A+ ELL++      R  D AGR+PLH AA  A GSA  V+ALLAAGA PAA +  G
Sbjct:  121 LAVLAGDGSPGCMRELLAGGAKVDAPDTNGVTALHAACGLNQPQLTSLLLDAGATPEARGAHGASPDARDERLRTACHAAAARDASEAIEALHELLRAAPPSAARQPDLAGRTPLHFAA--ASGSAPCVKALLAAGAAPAAASAIG 264          
BLAST of mRNA_P-wetherbeei_contig615.4.1 vs. uniprot
Match: A0A0D2VWE6_CAPO3 (Glycerophosphocholine phosphodiesterase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VWE6_CAPO3)

HSP 1 Score: 56.6 bits (135), Expect = 1.350e-6
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    1 PLIIAASLGYEGILQDLLAGGASTDSRDARRATALHWACADDHVACCRALIAAGADVTAG---TERSPLHEAAAGGHLLAVKELLKSGAAVDVRDGAGRSPL 297
            PL+++   G+  +   L+  GA  ++ D    TALH AC+++ V C   L+   A V      + R+PL +AA GGHL  V++LL +GA   VRD  G  PL
Sbjct:  281 PLLLSCRFGFFDVANRLICAGADPNATDEAGETALHAACSENAVECVELLLKHQAQVDVRDVYSSRTPLFDAAIGGHLSCVEKLLAAGAKALVRDVDGWRPL 382          
BLAST of mRNA_P-wetherbeei_contig615.4.1 vs. uniprot
Match: UPI001F3E99A2 (ankyrin repeat domain-containing protein n=1 Tax=Streptomyces sp. JJ36 TaxID=2736645 RepID=UPI001F3E99A2)

HSP 1 Score: 53.5 bits (127), Expect = 1.420e-5
Identity = 53/145 (36.55%), Postives = 68/145 (46.90%), Query Frame = 1
Query:   13 AASLGYEGILQDLLAGGASTDSRDARRATALHWACADDHVACCRALIAAGADVTA-----------GTER----SPLHEAAAGGHLLAVKELLKSGAAVDVRDGAGRSPLHAAAGCADGSAGVVRALLAAGADPAAGTRSGETPL 402
            AA  G+  ++++L+  GA  D+ D    T L  A +  H    R L+ AGAD  A           GTE     S L  A  GG +  V  LL +GA  D+      + L AA  C +GSAG+VR LL AGADP        TPL
Sbjct:  238 AAFHGHTAVVEELVRRGAPVDAVDQYGVTPLAQAASSGHPEAVRVLLRAGADPAARWRSTPVVCADGTEVVSEWSVLRSAVRGGRVEIVDLLLAAGAGSDLD-----AALEAA--CVEGSAGIVRRLLDAGADPEGPAGEARTPL 375          
BLAST of mRNA_P-wetherbeei_contig615.4.1 vs. uniprot
Match: A0A8C7PPN7_ONCMY (Ankyrin repeat and SOCS box containing 5a n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7PPN7_ONCMY)

HSP 1 Score: 50.4 bits (119), Expect = 9.700e-5
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    1 PLIIAASLGYEGILQDLLAGGASTDSRDARRATALHWACADDHVACCRALIAAGADVTAGTERSPLHEAAAGGHLLAVKELLKSGAAVDVRDGAGRSPLHAA 306
            PL  AA  G    L++L+  G + +       + LH AC  DHVAC RALIAAGA+V+   E SPLH AA       VK LL  GA +  R+   + P+ AA
Sbjct:   54 PLHDAACQGRLLALRNLILQGHNVNVVTIDHVSPLHVACLGDHVACARALIAAGANVSRYME-SPLHAAAEKDCTAIVKLLLDFGADIHARNIEFQRPVEAA 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig615.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A508BCE5_9GAMM6.750e-736.91Uncharacterized protein n=2 Tax=Xanthomonadaceae T... [more]
R1DTG2_EMIHU8.680e-739.73Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A0D2VWE6_CAPO31.350e-637.25Glycerophosphocholine phosphodiesterase n=2 Tax=Ca... [more]
UPI001F3E99A21.420e-536.55ankyrin repeat domain-containing protein n=1 Tax=S... [more]
A0A8C7PPN7_ONCMY9.700e-542.16Ankyrin repeat and SOCS box containing 5a n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig615contigP-wetherbeei_contig615:8313..8951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LH66
Model size417
Max annot lvl2880.D8LH66|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.04e-09
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size417
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.6701338-CDS-P-wetherbeei_contig615:8312..85531683186892.6701338-CDS-P-wetherbeei_contig615:8312..8553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig615 8313..8553 -
1683186892.682087-CDS-P-wetherbeei_contig615:8775..89511683186892.682087-CDS-P-wetherbeei_contig615:8775..8951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig615 8776..8951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig615.4.1prot_P-wetherbeei_contig615.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig615 8313..8951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig615.4.1

>prot_P-wetherbeei_contig615.4.1 ID=prot_P-wetherbeei_contig615.4.1|Name=mRNA_P-wetherbeei_contig615.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
PLIIAASLGYEGILQDLLAGGASTDSRDARRATALHWACADDHVACCRAL
IAAGADVTAGTERSPLHEAAAGGHLLAVKELLKSGAAVDVRDGAGRSPLH
AAAGCADGSAGVVRALLAAGADPAAGTRSGETPLHVACS
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mRNA from alignment at P-wetherbeei_contig615:8313..8951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig615.4.1 ID=mRNA_P-wetherbeei_contig615.4.1|Name=mRNA_P-wetherbeei_contig615.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig615:8313..8951- (Phaeothamnion wetherbeei SAG_119_79)
CCTCTCATCATCGCGGCAAGCTTGGGTTATGAAGGGATCCTCCAAGACCT TCTCGCCGGTGGTGCTTCTACCGACAGCCGCGATGCTCGGCGGGCGACGG CGCTCCATTGGGCGTGCGCCGACGACCATGTGGCCTGCTGCCGTGCCCTC ATCGCTGCCGGAGCAGACGTCACTGCGTTGGATGACTCAGGCCGCATGCC CATCGACCGCGCGACGCAACATGATACGCTGGCAGTCATGCTGGAGGCAT TGGATGCGCATGGTATTGTGGACGTGAACGCGGCTGCTCGCGCTGGCGAC GCCACACGGATCCGCCGCTACCTCACGGGCAGCAAAGCCCTTTACGAGAG CGAAGACGCCGGCAAGCCTGCAGCAGCGGCGTCGGCGGAACGGGGAAGGG GCACCGAGCGATCGCCGCTGCACGAGGCGGCGGCCGGCGGCCACCTGTTG GCGGTCAAGGAGCTGCTCAAGAGCGGCGCCGCGGTTGACGTACGGGACGG TGCCGGCCGATCTCCGCTGCACGCTGCGGCGGGGTGCGCCGATGGGAGCG CCGGCGTTGTCCGTGCCTTGCTCGCCGCCGGCGCCGACCCCGCGGCCGGA ACGCGGTCCGGCGAAACGCCACTTCATGTTGCATGCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig615:8313..8951-

>mRNA_P-wetherbeei_contig615.4.1 ID=mRNA_P-wetherbeei_contig615.4.1|Name=mRNA_P-wetherbeei_contig615.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig615:8313..8951- (Phaeothamnion wetherbeei SAG_119_79)
CCTCTCATCATCGCGGCAAGCTTGGGTTATGAAGGGATCCTCCAAGACCT
TCTCGCCGGTGGTGCTTCTACCGACAGCCGCGATGCTCGGCGGGCGACGG
CGCTCCATTGGGCGTGCGCCGACGACCATGTGGCCTGCTGCCGTGCCCTC
ATCGCTGCCGGAGCAGACGTCACTGCGGGCACCGAGCGATCGCCGCTGCA
CGAGGCGGCGGCCGGCGGCCACCTGTTGGCGGTCAAGGAGCTGCTCAAGA
GCGGCGCCGCGGTTGACGTACGGGACGGTGCCGGCCGATCTCCGCTGCAC
GCTGCGGCGGGGTGCGCCGATGGGAGCGCCGGCGTTGTCCGTGCCTTGCT
CGCCGCCGGCGCCGACCCCGCGGCCGGAACGCGGTCCGGCGAAACGCCAC
TTCATGTTGCATGCTCG
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