mRNA_P-wetherbeei_contig6149.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6149.1.2
Unique NamemRNA_P-wetherbeei_contig6149.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: A0A835YKE1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE1_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.750e-59
Identity = 133/369 (36.04%), Postives = 184/369 (49.86%), Query Frame = 1
Query:  529 RLWASSADGKEWKTVENVPFHPRMSVSALVEADGTVFCGYEAPFPLALSPG----------EAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIR--TIRGSDGVQSEAIVDLATTPYAHTRKVTALALGTNDAGSL-LFSGGEEGFVRVWQQRDGKLVAAGELPGHVRGVTAMVATQGLLWTASRDTTIRVWNMSTAGCIGVIGAASGGGHRGEVTCLAYMPDPDKAAXXXXXXXXXXXXXGLTGGHVLSASLDHTIRVWNAGDGTSAYEFDAKEAVTALACVPVSSAGPLILYGLQNGSVAIRDYPGFGLAFELLHAFYHVGHSRPVRAILPLAMPTTAAGGPLYFASADDSGKMCMWELALPP 1596
            ++W ++ADG  W     V   P +SV++L+  D  V C YEAPF LA  P           +                             +TVGMIR   +RG +    E ++     PYAHT  +  LA   + AG+L LFSGG+EG +R W+ +       G L GHVRGVT +     +LW+AS+D T+RVW+ +T  C+G+IG+  G GH+G VTC+A                      G  G ++++ S D                    ++VTAL C   S +GPL+L G  +GS+A+RD+PGF LAFEL  A  +VGH  PVRA+LPL +P    G  LYF S  + GKM MW++AL P
Sbjct:   63 QMW-TTADGAVWNEAAKVDLTPHLSVTSLLVVDPFVACAYEAPFALAAQPXXXXXXXXXXXQQQRGYGGAPGALRGDDAAGALQPPRAERMITVGMIRMLNLRGGEPAAVEVVIS-DKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWKAQGTGFQLGGVLEGHVRGVTCLCMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMA----------------GPLSIEGEQGEYMVTGSAD--------------------KSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIP----GPNLYFMSGAEDGKMMMWQMALKP 389          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 8.100e-52
Identity = 146/485 (30.10%), Postives = 221/485 (45.57%), Query Frame = 1
Query:  178 VSSSLLCPLAPTSTTLRGAYFGNR----SSYRG-GASXXXXXXXXXXXXXXXPVVGTAGDTFNVDVCRHNLTGTCTYGENCRHAHVIQRLAETATSPHN----AAVHAMLQWQGQ--NVFTASADGVLRLWASSADGKEWKTVENVPFHPRMSVSALVEADGTVFCGYEAPFPLALSPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIRTIRGSDGVQSEAIVDLATTPYAHTRKVTALALGTNDAGSLLFSGGEEGFVRVWQQRD--GKLVAAGELPGHVRGVTAMVAT--QGLLWTASRDTTIRVWNMSTAGCIGVIGAASGGGHRGEVTCLAYMPDPDKAAXXXXXXXXXXXXXGLTGGHVLSASLDHTIRVWNAGDGTSAYEFDAKEAVTALACV-PVSSAGPLILYGLQNGSVAIRDYPGFGLAFELLHAFYHVGHSRPVRAILPLAMPTTAAGGPLYFASADDSGKMCMWEL 1584
            V  SL CPL+    + RG  + +R    SSY G G         XXXXXXXX      GDT    VC+    G C    +CRH H +Q+++E   S  +     AV +++QW+ +  +VF+A  DG +++W S+ DG  W  V +V       V  L E +G ++ GY  P+                                     VTV  +R +  + G   E +  +  T +AH  ++  + +    A   +++G EEG +  W +           +L GH R +T++V+T   G+LW++S D TIR+WN  T  C+  I     GGH G V  LA      +               G    +V+S S D T+ V+ A DG   Y+      V+A+A   P      L+L G ++G++A+R++P F LAFE+     +VGHS+PV A+LP   P+   G   YF SA + G M  W +
Sbjct:    3 VQESLSCPLSVPRNSGRGGRYSSRGGGDSSYEGRGGRGGYNPAGXXXXXXXXXXXXXXGDTITFSVCKFYAAGNCDRAASCRHRHAVQKVSEAVVSEESDGFRGAVRSLVQWKDKPDHVFSACDDGTVKMW-STTDGSTWTQVTSVQMTEWRHVGDLQEVEGVLYVGYGTPYA--------------------------------HLADVTVDALRVMDLTSGSTQEVVSSV--TGFAHASRINRIMVAKVGAEPRVYTGDEEGRITAWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACVHTI-TKDNGGHEGPVAALAIGQSAAE---------------GTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDG---YFLSAGEDGTMMCWNV 433          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: A0A067CFV3_SAPPC (Uncharacterized protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CFV3_SAPPC)

HSP 1 Score: 101 bits (251), Expect = 4.250e-19
Identity = 110/440 (25.00%), Postives = 174/440 (39.55%), Query Frame = 1
Query:  331 TAGDTF-NVDVCRHNLTGTCTYGENCRHAHVIQRLAETATSPHNAAVHAMLQWQGQNVFTASADGVLRLWA-----SSADGKEWKT-VENVPFHPRMSV----SALVEADGTVFCGYEAPFPLALSPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIRTIR-GSDGVQSEAIVDLATTPYAHTRKVTALALGTNDA--GSLLFSGGEEGFVRVWQ--QRDGKLVAAGELPGHVRGVTAMVATQ----GLLWTASRDTTIRVWNMSTAGCIGVIGAASGGGHRGEVTCLAYMPDPDKAAXXXXXXXXXXXXXGLTGGHVLSASLDHTIRVWNAGDGTSAYEFDAKEAVTALACVPVSSA-GPLILYGLQNGSVAIRDYPGFGLAFELLHAFYHVGHSRPVRAILPLAMPTTAAGGPLY-FASADDSGKMCMWEL 1584
            + G+ F + ++C  +L   C   +NCR  H ++RL     S HN  V  +  W GQ  FTAS+DG LRLWA      +A   + K  ++ +P      V    S+L+     +F GYE   P                                    V VG I+     +  +    +   A  P+A  R VT+LA+  + A    ++FSGG +G +  W           AG + GH   +T +   Q      L ++SRD TIR+W+++T  C  V+  A+GG H   V  +       +                     ++S+  D  I VW      +    +  ++     C    +  GPL+L G  +GS+ I++ P F           +VGH+  VR I+P         GP + F +     KM  W++
Sbjct:   33 SGGNRFAHCEICTFHLDDRC-QRDNCRAPHFLKRLG--MASGHNGTVRDVALW-GQQAFTASSDGTLRLWALDSMKEAAVIPQCKIEIDTLPVEKSKKVTEGVSSLLLESPFLFVGYEEQTPAI--------------------------------PDVPVGRIQCWNLENPSMPPMELAQSAEMPFAMYRNVTSLAMAKHPATGAPIIFSGGADGRIAYWMFDAATNAFTCAGVMEGHALAITRLKVVQLGATTALISSSRDHTIRIWDVATYKCGTVLSRATGG-HANIVLDIEIWVSNGEP-------------------FLISSGYDQQIIVWQLSPPFAVMYTETLDSPALALCTTTDAVDGPLLLLGHDDGSIVIKELPSFKYKTVFGKTQTNVGHTDAVRRIVP---------GPAHTFFTTSGDRKMMAWQV 407          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: A0A024TG89_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TG89_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.760e-12
Identity = 108/437 (24.71%), Postives = 154/437 (35.24%), Query Frame = 1
Query:  355 DVCRHNLTGTCTYGENCRHAHVIQRLAETATSPHNAAVHAMLQWQG-QNVFTASADGVLRLWASSADGKEWKTVENVPF---------------HPRMSVSALVEADGTVFCGYEAPFPLALSPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIR--TIRGSDGVQSEAIVDLATTPYAHTRKVTALALGTNDA-GSLL-FSGGEEGFVRVW--QQRDGKLVAAGELPGHVRGVTAMVATQ----GLLWTASRDTTIRVWNMSTAGCIGVIGAASGGGHRGEVTCLAYMPDPDKAAXXXXXXXXXXXXXGLTGGHVLSASLDHTIRVWNAGDGTSAYEFDAKEAVTALACVPVSSAGPLILYGLQNGSVAIRDYPGFGLAFELLHAFYHVGHSRPVRAILPLAMPTTAAGGPLY-FASADDSGKMCMWEL 1584
            +VC   L   CT    C H H ++RL       H  AV  ++ W+G Q  FT S DG +RLW    D   WK    +P                     ++AL      +F GYE P P    PG                                VG I+   +        E +V     P+AH R V AL +  N   G L+  SG  +G +R W      G     G + GH RG+T +   Q      L ++S D TIR+W+++T  C  V+ +                       XXXXX                            A      Y       + +L         PL+L G  +GS+++++ P F           +VGHS+PVR I+P         GPL+ F +     KM  W++
Sbjct:   43 EVCAFYLDDRCTR-PTCNHPHFVKRLG--VAHGHTNAVKDVVLWEGKQQAFTCSNDGTIRLW----DCATWKETAQIPVCNVELDILPTERDKKKTSEGIAALHLEGSHLFVGYEEPIPQL--PG------------------------------CPVGKIKCWNLDNPSAPPLEFMVS-PDMPFAHYRNVWALTVAKNPVTGELIVLSGSGDGRIRYWTFDAAMGCFKCGGLMEGHSRGITRLKTVQLGATTALISSSMDHTIRIWDLATFKCGTVLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------XXXXXXXXXAPPFAKVYADTVDLPILSLCISSDGQDAPLLLMGHDDGSISVKELPSFNYKMAFGKVLNNVGHSQPVRRIIP---------GPLHTFFTVSMDNKMMAWQV 411          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: A0A225WL11_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225WL11_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.820e-10
Identity = 69/265 (26.04%), Postives = 106/265 (40.00%), Query Frame = 1
Query:  334 AGDTFNVDVCRHNLTG-TCTY-----GENCRHAHVIQRLAETATSPHNAAVHAMLQW-QGQNVFTASADGVLRLWASSADGKEWKTVENVPFHPRM------------------------SVSALVEADGTVFCGYEAPFPLALSPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIR--TIRGSDGVQSEAIVDLATTPYAHTRKVTALALGTNDAGSL-LFSGGEEGFVRVWQQRDG--KLVAAGELPGHVRGVTAM 1020
            +G +   +VCR  + G  C +     G  CR+ H ++ + ET    H+AA+  ++ W + Q +FT SAD  ++LW    D   W+ +  +     +                         V ALV     +F G+E  FP                                    V+VGM+R   +  +     E      TTP+AHT  V ALA+ T+  G+  LFSG  +G +R WQ  +   +    G + GHVRGVT +
Sbjct:   37 SGSSVGNEVCRRFMDGGKCDFEQSSGGRPCRYPHFVKTIGETRG--HSAAIKDVVMWAERQQLFTCSADASIKLW----DCATWQEITTISVQDALPPAVANGGNGGGRGGNREKTPHTEGVVALVLCGPFLFAGFEGRFP--------------------------------HNPKVSVGMVRGWNLENAQAPPFEFAAS-ETTPFAHTMNVQALAVATDPTGNATLFSGSADGSIRYWQMDNATNQFKCRGVMEGHVRGVTRL 262          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: A0A3M6VA38_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VA38_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.120e-8
Identity = 66/270 (24.44%), Postives = 104/270 (38.52%), Query Frame = 1
Query:  331 TAGDTFNVDVCRHNL-TGTCTY-----GENCRHAHVIQRLAETATSPHNAAVHAMLQW-QGQNVFTASADGVLRLWASSADGKEWKTVENVPFHPRMSVSALVEADGTV----------------------------FCGYEAPFPLALSPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIR--TIRGSDGVQSEAIVDLATTPYAHTRKVTALALGTNDAGSL-LFSGGEEGFVRVWQQRDG--KLVAAGELPGHVRGVTAM 1020
            + G +   +VCR  + +G C +     G +CR+ H ++ + ET    HN  +  +  W + Q +FT SAD  ++LW    D   W+ V  +     +  S+  ++  T+                            F G+E  FP                                    V+VGM+R   +        E +V  A  P+AH   V ALA+ T+  G+  LFSG  +G +R WQ      +    G + GHVRGVT +
Sbjct:   34 SGGSSVGNEVCRRFMDSGKCDFEQTSGGRSCRYPHFVKTIGETRG--HNGPIKDVTMWMERQQLFTCSADASIKLW----DCATWQEVTTINVQDALPPSSATKSSTTIGNTNGGNRRDKVPHTEGVVALVLCGPFLFAGFEGRFP--------------------------------PNPKVSVGMVRGWNLENPQTPPYEFVVSEAM-PFAHKMNVQALAVATDRTGNATLFSGSADGCIRYWQMDTAINQFKCGGVMEGHVRGVTRL 264          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: H3GZ16_PHYRM (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3GZ16_PHYRM)

HSP 1 Score: 63.9 bits (154), Expect = 6.160e-7
Identity = 65/257 (25.29%), Postives = 99/257 (38.52%), Query Frame = 1
Query:  355 DVCRHNLTG-TCTY-----GENCRHAHVIQRLAETATSPHNAAVHAMLQWQG-QNVFTASADGVLRLWASSADGKEWKTVENVPFHPRM-----------------------SVSALVEADGTVFCGYEAPFPLALSPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIR--TIRGSDGVQSEAIVDLATTPYAHTRKVTALALGTNDAGSL-LFSGGEEGFVRVWQ--QRDGKLVAAGELPGHVRGVTAM 1020
            +VCR  + G  C +     G  CR+ H ++ + ET    H+ A+  +  W   + +FT +AD  ++LW  +     W+ V  +     +                        V ALV     +F G+E  FP                                    V+VGM+R   +  +     E  V   T P+AHT  V ALA+ T+  G+  LFSG  +G +R WQ      +    G + GHVRGVT +
Sbjct:   69 EVCRRFMDGGKCEFEQTSGGRPCRYPHFVRTIGETRG--HSGAIKDVAMWPDREQLFTCAADASIKLWNCAT----WQEVTTINVQDALPPSANGNGSGGRGGNRDKTPHTEGVVALVICGPFLFAGFEGRFP--------------------------------PNPKVSVGMVRGWNLENAQAPPFEFAVS-ETMPFAHTMNVQALAVATDPTGNATLFSGSADGCIRYWQLDTASNQFKCRGVMEGHVRGVTRL 286          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: A0A0P1AY69_PLAHL (Cdc4 and related F-box and WD-40 proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY69_PLAHL)

HSP 1 Score: 63.5 bits (153), Expect = 7.520e-7
Identity = 64/260 (24.62%), Postives = 104/260 (40.00%), Query Frame = 1
Query:  334 AGDTFNVDVCRHNLTG-TCTY-----GENCRHAHVIQRLAETATSPHNAAVHAMLQW-QGQNVFTASADGVLRLW-------------------ASSADGKEWKTVENVPFHPRMS-VSALVEADGTVFCGYEAPFPLALSPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIRTIR-GSDGVQSEAIVDLATTPYAHTRKVTALALGTNDAGSL-LFSGGEEGFVRVWQ--QRDGKLVAAGELPGHVRGVTAM 1020
            +G +   +VCR  + G  C +     G  CR+ H ++ + ET    H+ ++  ++ W + Q +FT +AD  ++LW                   ++ A        +N    P M  V++LV     +F G+E  FP                                    V+VGM+R     +  +       L  TP+AHT  V A+A+ T+  G+  LFSG  +G +R WQ      +    G +  HVRGVT +
Sbjct:   34 SGSSVGNEVCRRFMDGGKCEFEQTSGGRPCRYPHFVKTIGETRG--HSGSIKDVVMWTERQQLFTCAADACIKLWDCATWQEITTISVQDVLPPSAKASNNNGGRKDNRDKSPHMEGVTSLVLCGPFLFAGFEGRFPF--------------------------------NPKVSVGMMRGWNLENPQIPPFEFAALDGTPFAHTMNVQAVAIATDPMGNATLFSGSADGSIRYWQLDTATNQFKCLGVMDRHVRGVTRL 259          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: A0A484E8G9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8G9_BRELC)

HSP 1 Score: 61.2 bits (147), Expect = 4.050e-6
Identity = 65/267 (24.34%), Postives = 104/267 (38.95%), Query Frame = 1
Query:  334 AGDTFNVDVCRHNLTG-TCTY-----GENCRHAHVIQRLAETATSPHNAAVHAMLQW-QGQNVFTASADGVLRLWASSADGKEWKTVENVPFHP-------------------------RMSVSALVEADGTVFCGYEAPFPLALSPGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGMIR--TIRGSDGVQSE-AIVDLATTPYAHTRKVTALALGTNDAGSL-LFSGGEEGFVRVWQ--QRDGKLVAAGELPGHVRGVTAM 1020
            +G +   +VCR  + G  C +     G  CR+ H ++ + ET    H+ ++  ++ W + Q +FT +AD  ++LW    D   W+ +  +                             R  V ALV     +F G+E  FP                                    V+VGM+R   +        E +  D+   P+AH+  V ALA+ T+  G+  LFSG  +G +R WQ      +    G + GHVRGVT +
Sbjct:   33 SGPSVGNEVCRRFMDGGKCEFEQTSGGRPCRYPHFVKTIGETRG--HSGSIKDVVMWAERQQLFTCAADASIKLW----DCATWQEITTISVQDALPPSVSSVSNGSGGRGDSRDKSAQREGVVALVLCGPFLFAGFEGRFPA--------------------------------NPKVSVGMMRGWNLENPQVPPFEFSASDMM--PFAHSMNVQALAVATDPTGNATLFSGSADGLIRYWQLDSASNQFKCCGVMEGHVRGVTRL 259          
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Match: A0A6D2KWK4_9BRAS (Uncharacterized protein n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2KWK4_9BRAS)

HSP 1 Score: 59.3 bits (142), Expect = 1.470e-5
Identity = 45/153 (29.41%), Postives = 67/153 (43.79%), Query Frame = 1
Query:  838 LATTPYAHTRKVTALALGTNDAGSLLFSGGEEGFVRVWQQRD--GKLVAAGELPGHVRGVTAMVATQGLLWTASRDTTIRVWNMSTA--GCIGVIGAASGGGHRGEVTCLA-YMPDPDKAAXXXXXXXXXXXXXGLTGGHVLSASLDHTIRVW 1281
            L  T   H   + ALAL   +  SLL+SGG +G + VW++ +  G +   G L GH   V  +V    +L + S D  +R+W  S     C+ ++      GHRG V CLA  + D    A                  ++ S  LD  ++VW
Sbjct:  252 LVATFSEHHSGINALALSCYNERSLLYSGGSDGSILVWERDEEGGDISVVGVLRGHRESVLCLVVISDILCSGSADKMVRLWKCSATDFSCLALLE-----GHRGPVKCLAGAIRDSGTQAEASY--------------YIYSGGLDSQVKVW 385          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6149.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835YKE1_9STRA3.750e-5936.04WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
D8LJM7_ECTSI8.100e-5230.10C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A067CFV3_SAPPC4.250e-1925.00Uncharacterized protein (Fragment) n=2 Tax=Saprole... [more]
A0A024TG89_9STRA2.760e-1224.71Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A225WL11_9STRA8.820e-1026.04Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A3M6VA38_9STRA6.120e-824.44Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
H3GZ16_PHYRM6.160e-725.29Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]
A0A0P1AY69_PLAHL7.520e-724.62Cdc4 and related F-box and WD-40 proteins n=1 Tax=... [more]
A0A484E8G9_BRELC4.050e-624.34Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6D2KWK4_9BRAS1.470e-529.41Uncharacterized protein n=4 Tax=Coluteocarpeae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6149contigP-wetherbeei_contig6149:554..3087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJM7
PFAMsF-box-like,WD40,zf-CCCH,zf-RING_UBOX
Model size2209
Max annot lvl2759|Eukaryota
KEGG koko:K10267,ko:K10646
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.53e-42
EggNOG OGsKOG0274@1|root,KOG0274@2759|Eukaryota
EC2.3.2.27
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Cds size1140
COG categoryM
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.3737853-UTR-P-wetherbeei_contig6149:553..11481683186892.3737853-UTR-P-wetherbeei_contig6149:553..1148Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6149 554..1148 -
1683186892.4109845-UTR-P-wetherbeei_contig6149:2613..30871683186892.4109845-UTR-P-wetherbeei_contig6149:2613..3087Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6149 2614..3087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.3898396-CDS-P-wetherbeei_contig6149:1148..14391683186892.3898396-CDS-P-wetherbeei_contig6149:1148..1439Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6149 1149..1439 -
1683186892.4002457-CDS-P-wetherbeei_contig6149:1764..26131683186892.4002457-CDS-P-wetherbeei_contig6149:1764..2613Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6149 1765..2613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6149.1.2prot_P-wetherbeei_contig6149.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6149 1149..2613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6149.1.2

>prot_P-wetherbeei_contig6149.1.2 ID=prot_P-wetherbeei_contig6149.1.2|Name=mRNA_P-wetherbeei_contig6149.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=380bp
MLQWQGQNVFTASADGVLRLWASSADGKEWKTVENVPFHPRMSVSALVEA
DGTVFCGYEAPFPLALSPGEAAAAASAAAAAGSAAGNGGAAAAAGAPPPV
TVGMIRTIRGSDGVQSEAIVDLATTPYAHTRKVTALALGTNDAGSLLFSG
GEEGFVRVWQQRDGKLVAAGELPGHVRGVTAMVATQGLLWTASRDTTIRV
WNMSTAGCIGVIGAASGGGHRGEVTCLAYMPDPDKAAAAAAAGGGAAAAA
GLTGGHVLSASLDHTIRVWNAGDGTSAYEFDAKEAVTALACVPVSSAGPL
ILYGLQNGSVAIRDYPGFGLAFELLHAFYHVGHSRPVRAILPLAMPTTAA
GGPLYFASADDSGKMCMWELALPPGFSQS*
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mRNA from alignment at P-wetherbeei_contig6149:554..3087-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6149.1.2 ID=mRNA_P-wetherbeei_contig6149.1.2|Name=mRNA_P-wetherbeei_contig6149.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2534bp|location=Sequence derived from alignment at P-wetherbeei_contig6149:554..3087- (Phaeothamnion wetherbeei SAG_119_79)
TCAGCAATCGCGGGGCGGCTACCGGGGAAGGGGTGCATCACGAGTAAGGT GAACAGAACCGAAGGCTGCTTGCTGCAATAACGACGTGCCTGAAGAAGGA AGCGCGTTCGACAATCTTTGCCGAACTTCAGACAACCAACGCGCACTGAA GATTTCTCCCCATGTGGCGAACAACTCGTCTCCTCTTCTCTTCTTTGTCC TCTTGCCCCAACATCCACAACTCTCAGAGGAGCCTACTTTGGCAACCGGA GCAGCTACCGCGGGGGCGCCTCCGGCGGTGGCGGCGGCGGGGGCCGCGGC AGCGGGAGAGGAGGGGGGCCTGTCGTCGGCACGGCAGGTGACACATTCAA TGTTGACGTCTGTCGCCACAACCTCACGGGCACCTGCACCTATGGGGAGA ACTGCCGGCACGCCCATGTCATCCAGCGGCTCGCCGAGACGGCCACGTCG CCGCACAACGCCGCCGTGCACGCCATGTTGCAGTGGCAGGGGCAGAACGT CTTCACAGCATCGGCCGACGGCGTCCTCCGCCTTTGGGCGTCGTCCGCCG ACGGCAAGGAGTGGAAAACTGTCGAAAATGTGCCGTTCCACCCGCGTATG TCCGTCTCCGCGCTCGTCGAGGCGGACGGGACGGTCTTTTGTGGCTATGA AGCGCCGTTTCCCTTGGCGCTCTCGCCGGGGGAAGCCGCCGCCGCTGCGA GCGCTGCCGCCGCCGCAGGAAGCGCGGCGGGTAACGGCGGCGCGGCGGCG GCGGCGGGCGCGCCGCCGCCCGTGACGGTGGGTATGATCCGAACGATCCG GGGTTCAGATGGTGTCCAGTCGGAGGCCATAGTGGATTTGGCAACGACGC CGTACGCGCACACGAGGAAAGTCACCGCGCTGGCGCTGGGCACCAACGAT GCGGGCTCGCTGCTCTTCTCCGGCGGCGAGGAGGGCTTTGTACGCGTCTG GCAGCAACGGGACGGGAAGCTCGTTGCGGCCGGCGAGCTGCCGGGGCACG TCCGCGGCGTGACTGCCATGGTGGCGACGCAGGGCCTGCTCTGGACCGCA AGCCGTGACACGACCATTCGCGTCTGGAACATGAGCACGGCCGGGTGCAT TGGTGTCATTGGCGCCGCGTCGGGCGGCGGCCACCGCGGCGAAGTGACGT GTCTCGCGTATATGCCGGACCCGGACAAGGCGGCCGCGGCGGCAGCCGCG GGCGGCGGGGCGGCGGCGGCGGCGGGGCTCACCGGCGGGCACGTGTTATC GGCGTCGCTCGACCACACCATCCGTGTGTGGAATGCCGGGGATGGCACCT CGGCGTACGAATTCGACGCAAAGGTGAGAGAGATAGACAGGAGGAGTGGG AGCTTTTCGTCTGATTCTTCCTTCGGCCGGTTTTCGAATTTGGCGTGTTT TGTTTAATGAGCTGCACCTCCGTGTCTGCCATGGCGGTATCTCGTAAAGG TGTCATTGCGCCGAGCATCGTCTCTTTCCTCAAGCCCGCTCGTTCGAAGC ACGACTGGGGGAGTTCTGATTGTCACACAATTCTTTCTTTCTGTTTAGGT TTTCAGGTGGAAATTACCTTCTTTGTGTCGTTTGGCGCAGTTCCAGTTTT ACTTTAATGCCTTTCATCGTTTCAATTTTTTTCGCGTGCCTTTTCCAGGA AGCGGTGACGGCGCTGGCCTGCGTGCCGGTGTCCTCGGCTGGCCCGCTGA TCCTCTACGGGCTCCAAAACGGATCCGTTGCCATCCGTGACTACCCGGGT TTCGGCCTGGCCTTCGAACTGTTGCACGCCTTTTACCACGTCGGCCACTC GCGGCCGGTGCGGGCGATCCTTCCGCTAGCCATGCCGACGACGGCAGCGG GCGGGCCGCTCTACTTTGCATCGGCGGACGATTCTGGCAAGATGTGCATG TGGGAGTTGGCGCTGCCGCCGGGGTTCTCCCAGTCATAACCAGGTTGGCT GGCCGCACACGTAAGATTCATCGGCGGCAGCGGGCGTGGTGGCAATGATG GGAGGCTGCGGGTTGCGGGCGACGGTGGCAGATGCCAGTCAGCGGAGGCG GGAGCGGCGCCCATACAGCGGAAGGAGCGGGCGAATGGCGTCCGGTCGGC CGTATTTGCGATGGTAGGTTCCCGTGTGGCGCCGGTTTTGATGGCGGGAG AGGCGGCGACGACGGCAGCAGCTATGGCTGCTGCAGCGCCGGCGCTGGCG GCGGCACGGCGGAAGCGGCGGCAGCGGCGGCAGCGACGACTAATAGAAGT GGAAAACAGGTGGGAGCTGTTTTAGGTCGAATCATAGCGGAACACAGATT TTGGCAATAAGTGATCCAAGCCTGGGCAGGGGCGTCGGCGATTTGGATCC TGCCACTGTCGCCGTCGCCTTCTGTTCCCTTTTGGGTGGCGGGAGTGGCG GTGGCAGCGGCGGTGGCGGCGGCACTGGCTGCGTAGGCAGTGGAGCGGAT TCCGGCAAAGGCGGGCTGCTGCCCCTCGCGGCACGTCTTTTCCGTCTCCT AACAGAGTAGGAGTCCCAAGCATCATGACACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6149:554..3087-

>mRNA_P-wetherbeei_contig6149.1.2 ID=mRNA_P-wetherbeei_contig6149.1.2|Name=mRNA_P-wetherbeei_contig6149.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1140bp|location=Sequence derived from alignment at P-wetherbeei_contig6149:554..3087- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCAGTGGCAGGGGCAGAACGTCTTCACAGCATCGGCCGACGGCGT
CCTCCGCCTTTGGGCGTCGTCCGCCGACGGCAAGGAGTGGAAAACTGTCG
AAAATGTGCCGTTCCACCCGCGTATGTCCGTCTCCGCGCTCGTCGAGGCG
GACGGGACGGTCTTTTGTGGCTATGAAGCGCCGTTTCCCTTGGCGCTCTC
GCCGGGGGAAGCCGCCGCCGCTGCGAGCGCTGCCGCCGCCGCAGGAAGCG
CGGCGGGTAACGGCGGCGCGGCGGCGGCGGCGGGCGCGCCGCCGCCCGTG
ACGGTGGGTATGATCCGAACGATCCGGGGTTCAGATGGTGTCCAGTCGGA
GGCCATAGTGGATTTGGCAACGACGCCGTACGCGCACACGAGGAAAGTCA
CCGCGCTGGCGCTGGGCACCAACGATGCGGGCTCGCTGCTCTTCTCCGGC
GGCGAGGAGGGCTTTGTACGCGTCTGGCAGCAACGGGACGGGAAGCTCGT
TGCGGCCGGCGAGCTGCCGGGGCACGTCCGCGGCGTGACTGCCATGGTGG
CGACGCAGGGCCTGCTCTGGACCGCAAGCCGTGACACGACCATTCGCGTC
TGGAACATGAGCACGGCCGGGTGCATTGGTGTCATTGGCGCCGCGTCGGG
CGGCGGCCACCGCGGCGAAGTGACGTGTCTCGCGTATATGCCGGACCCGG
ACAAGGCGGCCGCGGCGGCAGCCGCGGGCGGCGGGGCGGCGGCGGCGGCG
GGGCTCACCGGCGGGCACGTGTTATCGGCGTCGCTCGACCACACCATCCG
TGTGTGGAATGCCGGGGATGGCACCTCGGCGTACGAATTCGACGCAAAGG
AAGCGGTGACGGCGCTGGCCTGCGTGCCGGTGTCCTCGGCTGGCCCGCTG
ATCCTCTACGGGCTCCAAAACGGATCCGTTGCCATCCGTGACTACCCGGG
TTTCGGCCTGGCCTTCGAACTGTTGCACGCCTTTTACCACGTCGGCCACT
CGCGGCCGGTGCGGGCGATCCTTCCGCTAGCCATGCCGACGACGGCAGCG
GGCGGGCCGCTCTACTTTGCATCGGCGGACGATTCTGGCAAGATGTGCAT
GTGGGAGTTGGCGCTGCCGCCGGGGTTCTCCCAGTCATAA
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