mRNA_P-wetherbeei_contig6147.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6147.1.1
Unique NamemRNA_P-wetherbeei_contig6147.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6147.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6147contigP-wetherbeei_contig6147:784..1701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size690
Hectar predicted targeting categoryother localisation
Exons2
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.2048297-CDS-P-wetherbeei_contig6147:783..12601683186892.2048297-CDS-P-wetherbeei_contig6147:783..1260Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6147 784..1260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.2148743-UTR-P-wetherbeei_contig6147:1260..12721683186892.2148743-UTR-P-wetherbeei_contig6147:1260..1272Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6147 1261..1272 -
1683186892.2239-UTR-P-wetherbeei_contig6147:1501..17011683186892.2239-UTR-P-wetherbeei_contig6147:1501..1701Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6147 1502..1701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6147.1.1prot_P-wetherbeei_contig6147.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6147 784..1260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6147.1.1

>prot_P-wetherbeei_contig6147.1.1 ID=prot_P-wetherbeei_contig6147.1.1|Name=mRNA_P-wetherbeei_contig6147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MRKKATKIAEGRRAAPPCAARAAAAPVASPRAARAAAAATAATPTPKTPP
APSTSRVNPAVARARNLAAAFTPDSRGTPVRTPLPASRGAAAATPAAAAT
AARATTAAANAAAPAAGAAGAAAALAAATAPANGAAATTATTPAKAFGAA
AAAGAPTGR
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mRNA from alignment at P-wetherbeei_contig6147:784..1701-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6147.1.1 ID=mRNA_P-wetherbeei_contig6147.1.1|Name=mRNA_P-wetherbeei_contig6147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig6147:784..1701- (Phaeothamnion wetherbeei SAG_119_79)
GTTTGGCGGGAACGAAAGGGGAGAGAGAGAAGAAAGTGGACCTTGACGAG
ACTCCTGCTTCGTCCTACTGAGAAGGTTTCACCAGCCCTGCACACGCGCT
CCGTCATCATCCTCTTTCTTTTACAGGGCTAAGTTGCAACTCTGTGAACG
AATTGGAGAAGCAGACCGGCGGGAGGGAGACGACGCAAACGAGAGAACAG
GTGTGACGACAGCTGCTTCGATTGCTGATCGCCGGCCTCGCGCAACATGT
CGTCCTTTGAGCCTTTAGTTATTACCTTTCGAAAGTCGACATTCGTGCCA
ATCTTTCGAAAGACGCTTGCAACACTACCCGTGCCCAGCATTTTCCTTCG
AGGAGCTCATTTCGCGTTACGACATGGATTGACCTTACAATGACACGCCG
TCTTGCCTCCGCCGTCGCTCTCGAGGCAGCTTGAAGGATCGATGCGCAAG
AAAGCAACCAAGATCGCGGAAGGCCGCCGTGCAGCGCCGCCCTGCGCGGC
GCGTGCGGCGGCTGCTCCAGTAGCTTCGCCGCGCGCGGCACGCGCGGCGG
CCGCTGCAACAGCAGCGACGCCTACCCCGAAGACGCCACCGGCGCCGAGC
ACGTCCAGGGTCAACCCCGCTGTCGCGCGAGCGCGCAACCTGGCGGCCGC
CTTCACGCCCGACTCACGCGGCACGCCGGTGCGGACGCCGCTTCCTGCCT
CTAGAGGTGCCGCTGCTGCCACTCCTGCTGCGGCTGCTACTGCAGCCAGA
GCCACCACAGCCGCGGCTAACGCAGCTGCTCCTGCTGCTGGAGCCGCTGG
CGCGGCCGCGGCTCTCGCCGCTGCCACTGCTCCCGCTAATGGCGCGGCGG
CCACCACAGCCACCACCCCCGCCAAAGCCTTTGGTGCCGCTGCTGCCGCC
GGCGCTCCTACCGGTCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6147:784..1701-

>mRNA_P-wetherbeei_contig6147.1.1 ID=mRNA_P-wetherbeei_contig6147.1.1|Name=mRNA_P-wetherbeei_contig6147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig6147:784..1701- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAGAAAGCAACCAAGATCGCGGAAGGCCGCCGTGCAGCGCCGCC
CTGCGCGGCGCGTGCGGCGGCTGCTCCAGTAGCTTCGCCGCGCGCGGCAC
GCGCGGCGGCCGCTGCAACAGCAGCGACGCCTACCCCGAAGACGCCACCG
GCGCCGAGCACGTCCAGGGTCAACCCCGCTGTCGCGCGAGCGCGCAACCT
GGCGGCCGCCTTCACGCCCGACTCACGCGGCACGCCGGTGCGGACGCCGC
TTCCTGCCTCTAGAGGTGCCGCTGCTGCCACTCCTGCTGCGGCTGCTACT
GCAGCCAGAGCCACCACAGCCGCGGCTAACGCAGCTGCTCCTGCTGCTGG
AGCCGCTGGCGCGGCCGCGGCTCTCGCCGCTGCCACTGCTCCCGCTAATG
GCGCGGCGGCCACCACAGCCACCACCCCCGCCAAAGCCTTTGGTGCCGCT
GCTGCCGCCGGCGCTCCTACCGGTCGA
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