mRNA_P-wetherbeei_contig61.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig61.7.1
Unique NamemRNA_P-wetherbeei_contig61.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: A0A6H5KLD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.070e-31
Identity = 82/187 (43.85%), Postives = 116/187 (62.03%), Query Frame = 2
Query:  188 MVAIPALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYEYKASNDKSAASAAKTAMEKAEETQQLQERLAAID---ARLEALEKT--------------RWGLGLGPSSKRSKNDQAPARTTAMAPSTP 697
            MVAIP LK F++TVKT AKPMA  ++ +A +HP+   +L  +GQ T+ ISARI+IR AGH+T  IKPL+E KA+A GGN+LAEG IY +G  L+++EY ++     A  A + ++K EE +++ + L  I+   ARLEAL++T              +W LGL          QAP+R T +  STP
Sbjct:    1 MVAIPVLKLFSMTVKTLAKPMARKIRTEAQRHPRFRGVLNSMGQATNRISARISIRLAGHTTTKIKPLEEDKAIADGGNMLAEGFIYGLGTSLMVFEYMSNAKDKEAKEAISKLKKEEEKREIAQALEDINRRLARLEALDRTGNRTHEVDDGADQRKWPLGLA--------FQAPSRKTCVGDSTP 179          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: A0A835YQK9_9STRA (Optic atrophy 3 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQK9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.320e-22
Identity = 62/153 (40.52%), Postives = 97/153 (63.40%), Query Frame = 2
Query:  188 MVAIPALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYEYKASNDKSAASAAKTAMEKAEETQQLQERLAAIDARLEALEKTR------WGLGLG 628
            M  +PA K F+L VKT AKP+A  L+ +A  +  +   ++ +GQ++H++S  I++RAAG + ++IKPLDE+KALA GG++L+E  I+++  GL++++Y  S  K+AA A           +QL+  L AI ARL+ +E         WGLGLG
Sbjct:    1 MAQVPAAKVFSLVVKTIAKPLAKELRRQASANATLKRAVIWMGQSSHKVSTIISVRAAGFTASNIKPLDESKALAIGGDLLSEIFIFSVAGGLLVWDYNNSAAKAAAKAXXXXXXXXXXARQLKASLEAIHARLDEIEHKVYGSGGIWGLGLG 153          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: A0A7S4VC20_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VC20_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.540e-18
Identity = 52/137 (37.96%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  194 AIPALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYEYKASNDKSAASAAKTAMEKAEETQQLQERLAAIDARLEALEK 604
            A+P  K   L +KT +KP A  +K    ++    ++L+ +GQTTH++++R+ I +AG+   SI PL+  KAL +G ++L E +++ I    V+YEY  S +K  A  A+   E  +E+ +LQ +L A+DAR+ ALEK
Sbjct:    4 ALPITKLAGLLIKTLSKPAAKRIKHDFSRYDFTKNILIGIGQTTHQLTSRMTIWSAGYKVRSITPLEPEKALTKGADLLGESIVFLISGVTVVYEYNRSKEKEKAKEAQKLKEIEDESDRLQGKLNALDARIHALEK 140          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: A0A7S4NHT5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NHT5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.190e-16
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  194 AIPALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYEYKASNDKSAASAAKTAMEKAEETQQLQERLAAIDARLEALEK 604
            A+P  K   L VKT AKP+A  +K    + P   +LL+++GQTTH +++R+ I +AG+   SI PL++ KA+++G + L E +++ +G G+V++EY  S +                  +LQ +L A+D RL ALE+
Sbjct:    4 ALPVTKLAGLLVKTLAKPLAKRIKHDFSRFPVTQTLLIRVGQTTHALTSRLTIWSAGYKVRSITPLEQEKAMSKGADFLGESIVFLVGGGVVVWEYNLSKEXXXXXXXXXXXXXXXXXDRLQAKLNALDKRLAALER 140          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: Q6C339_YARLI (YALI0F02871p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6C339_YARLI)

HSP 1 Score: 82.8 bits (203), Expect = 5.400e-15
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  203 ALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYE 478
            ALK  +L V+T AKPMA A+K +A QHP+   + + L Q  H+    + +R  G ST  ++PL+EAKA+  G   +AEG I+++  GL++YE
Sbjct:    5 ALKLTSLLVRTIAKPMATAIKGQAKQHPRFKQICISLAQRLHQTDTNLKMRLMGKSTFKVRPLNEAKAIESGATFVAEGFIFSVAGGLILYE 96          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: A0A7S0VKV8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VKV8_9CRYP)

HSP 1 Score: 82.0 bits (201), Expect = 1.420e-14
Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = 2
Query:  197 IPALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYEYKASNDKSAASAAKTAMEKAEETQQLQERLAAIDARLEALE 601
            +P  KF TL ++T +KP+ANA+K +A+ HP          Q  H +   + ++  GH+  +IKPL EA+A+A+G +IL EGVI++I A L+  E    N ++AAS A+       +  Q+QE  +  +ARLE LE
Sbjct:    2 MPLFKFGTLFIRTLSKPVANAIKKRAVGHPSFRDRCASFAQWWHRMEVSLQVQLMGHTARTIKPLGEAEAVAQGADILGEGVIFSIAALLLAIE----NRRAAASDAR-------KKAQIQEEFSRQNARLEELE 125          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: A0A6U4UFC5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4UFC5_HEMAN)

HSP 1 Score: 75.5 bits (184), Expect = 3.060e-12
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = 2
Query:  197 IPALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYEYKASNDKSAASAAKTAMEKAEETQQLQERLAAIDARLEALE 601
            +P  KF TL ++T +KP+A A+K +A+ H    +      Q  H +   + ++  GH+  +IKPL EA+A+A+G +IL EGVI++I A L+  E    N ++AAS A+       +  Q+Q+  +  +ARLE LE
Sbjct:    2 MPLFKFGTLLIRTLSKPVAAAIKRRAVGHQSFRNRCASFAQWWHRMEVSLQVQLMGHTARTIKPLGEAEAVAQGADILGEGVIFSIAAILLAVE----NRRAAASDAR-------KKAQIQDEFSRQNARLEELE 125          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: A0A0F7SGD4_PHARH (Predicted coiled-coil protein n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SGD4_PHARH)

HSP 1 Score: 73.9 bits (180), Expect = 1.920e-11
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = 2
Query:  203 ALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYE-YKASND 496
            ++K  +L +KT +KP+AN LK +A +H +   + + L Q  H    ++     G S ASI+PL++AKA+A G N LAEG ++ +G  L++ E Y++S +
Sbjct:    3 SVKIASLFIKTVSKPIANKLKQQAAEHERFRQVCISLAQFMHSTEVKLRTNVMGESRASIRPLNDAKAVANGANSLAEGFLFLVGISLIVGEAYRSSRN 101          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: A0A5B8MMV1_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MMV1_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.360e-10
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  203 ALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHST---ASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYEYKASN 493
            A+K FT+TVKTA+KP+A   +   + HP +    +   Q  H  + RI   A G      A I PL++ +AL   G   +E  IYT+G GL++YEY  SN
Sbjct:    5 AIKVFTMTVKTASKPLAYVFQDYMLSHPVVRQRAIDWAQVLHRWNVRINRAARGQEKKKGAEISPLNDERALNLAGKFFSESFIYTVGGGLLLYEYDRSN 104          
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Match: UPI001DE1E46E (uncharacterized protein n=1 Tax=Ogataea philodendri TaxID=1378263 RepID=UPI001DE1E46E)

HSP 1 Score: 65.5 bits (158), Expect = 1.630e-8
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  182 GKMVAIPALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEISARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYE 478
            G M +I ALK  TL V+  AKP+AN +K++A  H       V++ Q  H +  R+     G     I+PL+EAKA+  G  IL+E  I+++ AG ++YE
Sbjct:   98 GNMSSI-ALKLTTLFVRQIAKPIANTIKSEAKNHQGFKVTCVRVAQYFHFLDERLKTSLMGSKARQIRPLNEAKAIQNGAEILSETFIFSVAAGALLYE 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig61.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLD9_9PHAE3.070e-3143.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YQK9_9STRA3.320e-2240.52Optic atrophy 3 protein-domain-containing protein ... [more]
A0A7S4VC20_9STRA1.540e-1837.96Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4NHT5_9STRA1.190e-1635.77Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
Q6C339_YARLI5.400e-1542.39YALI0F02871p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6C... [more]
A0A7S0VKV8_9CRYP1.420e-1438.52Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A6U4UFC5_HEMAN3.060e-1236.30Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A0F7SGD4_PHARH1.920e-1137.37Predicted coiled-coil protein n=1 Tax=Phaffia rhod... [more]
A0A5B8MMV1_9CHLO1.360e-1039.00Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
UPI001DE1E46E1.630e-838.38uncharacterized protein n=1 Tax=Ogataea philodendr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig61contigP-wetherbeei_contig61:10263..11481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4952.CAG77728
PFAMsOPA3
Model size966
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0019216,GO:0019222,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0065007,GO:0080090
Exons2
Evalue1.26e-15
EggNOG OGsKOG3335@1|root,KOG3335@2759|Eukaryota,3A5YM@33154|Opisthokonta,3P56Z@4751|Fungi,3QWRG@4890|Ascomycota,3RUP5@4891|Saccharomycetes
DescriptionOptic atrophy 3 protein (OPA3)
Cds size735
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.4954135-UTR-P-wetherbeei_contig61:10262..103061683186888.4954135-UTR-P-wetherbeei_contig61:10262..10306Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig61 10263..10306 -
1683186888.5198858-UTR-P-wetherbeei_contig61:11294..114811683186888.5198858-UTR-P-wetherbeei_contig61:11294..11481Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig61 11295..11481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.5043569-CDS-P-wetherbeei_contig61:10306..107731683186888.5043569-CDS-P-wetherbeei_contig61:10306..10773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig61 10307..10773 -
1683186888.5120292-CDS-P-wetherbeei_contig61:11026..112941683186888.5120292-CDS-P-wetherbeei_contig61:11026..11294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig61 11027..11294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig61.7.1prot_P-wetherbeei_contig61.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig61 10307..11294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig61.7.1

>prot_P-wetherbeei_contig61.7.1 ID=prot_P-wetherbeei_contig61.7.1|Name=mRNA_P-wetherbeei_contig61.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
MVAIPALKFFTLTVKTAAKPMANALKAKAIQHPKMNSLLVKLGQTTHEIS
ARIAIRAAGHSTASIKPLDEAKALARGGNILAEGVIYTIGAGLVIYEYKA
SNDKSAASAAKTAMEKAEETQQLQERLAAIDARLEALEKTRWGLGLGPSS
KRSKNDQAPARTTAMAPSTPATASTGQTMPFERAAEGLSKSPSTSSTPAA
VKSGEQQNAGRATVLAADSKAAGDAGEARRSTVTWYQWLTTGRR*
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mRNA from alignment at P-wetherbeei_contig61:10263..11481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig61.7.1 ID=mRNA_P-wetherbeei_contig61.7.1|Name=mRNA_P-wetherbeei_contig61.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1219bp|location=Sequence derived from alignment at P-wetherbeei_contig61:10263..11481- (Phaeothamnion wetherbeei SAG_119_79)
ATTTGAGCTCTGCTTTTCTACTCTTATCAGGGTCGTCCTGCAGCTTCTTG CTCTTGTTTCTGAGGCTGTTCTCGACCTCTTCTTCCGGACTTCTCATAGC GACGAGACCCTCCCATAAGACAAGCTTGGCTGGCCCTTTCGCTGCGAATT TCGCAAGCAGGAGACTCAGCCAACATCCTAAGGAAAGATGGTTGCAATTC CTGCGCTGAAGTTCTTCACTTTGACCGTCAAGACGGCAGCGAAACCAATG GCAAACGCTTTGAAAGCCAAAGCCATACAGCACCCCAAAATGAACTCGCT TCTTGTGAAGCTCGGACAGACGACGCACGAGATCTCGGCGAGGATAGCGA TTCGCGCGGCCGGACACTCAACAGCGAGTATCAAGCCGCTAGACGAGGCG AAGGCGCTGGCGCGAGGTGGAAACATTCTGGCTGAGGGTGTCATCTACAC AATCGGTGAGTCAAGCGTCGAGACCGTGTTTTACGCGTTTCATTTTTCGG CGCTGCAGTTTCCTCTGATAAGGTTGGGTCAAGGGCCAGCGGAGAAGGAG CATGTATCTGTTTGCGAAATTGTCCCTCTCCAACGAATCGATGTTGCAAT AACACGACGGCGTAACGATTTGAACAAGATGTTAATGGGCATATGTTATA CGCAAAAGCATAAAACAAATCCCTCCTGCGCTCAACGCACGACTTGCTCG TCACAAAGGTGCCGGCCTGGTGATCTACGAGTACAAGGCGAGCAACGACA AGTCCGCCGCTAGCGCGGCCAAGACGGCGATGGAAAAGGCAGAGGAAACG CAACAGCTCCAGGAGAGGCTGGCGGCCATCGATGCCAGGCTCGAGGCGCT CGAGAAGACCCGATGGGGCTTGGGGCTCGGCCCCTCCAGCAAGCGCAGCA AAAACGACCAGGCGCCGGCGCGAACAACGGCAATGGCGCCGTCGACGCCG GCGACGGCAAGCACGGGACAGACGATGCCGTTCGAAAGGGCTGCAGAGGG GCTTTCCAAAAGTCCCTCGACCTCATCGACGCCAGCGGCGGTAAAAAGCG GGGAGCAGCAGAACGCCGGCAGAGCCACCGTGTTGGCTGCGGACTCGAAA GCTGCCGGTGATGCGGGCGAGGCGCGCCGCTCCACAGTAACATGGTACCA GTGGCTCACCACCGGAAGAAGATGATGTAAAGCCAACAGCCTTTAGTAAA CAAAAGTGTTTTTGATCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig61:10263..11481-

>mRNA_P-wetherbeei_contig61.7.1 ID=mRNA_P-wetherbeei_contig61.7.1|Name=mRNA_P-wetherbeei_contig61.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig61:10263..11481- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGCAATTCCTGCGCTGAAGTTCTTCACTTTGACCGTCAAGACGGC
AGCGAAACCAATGGCAAACGCTTTGAAAGCCAAAGCCATACAGCACCCCA
AAATGAACTCGCTTCTTGTGAAGCTCGGACAGACGACGCACGAGATCTCG
GCGAGGATAGCGATTCGCGCGGCCGGACACTCAACAGCGAGTATCAAGCC
GCTAGACGAGGCGAAGGCGCTGGCGCGAGGTGGAAACATTCTGGCTGAGG
GTGTCATCTACACAATCGGTGCCGGCCTGGTGATCTACGAGTACAAGGCG
AGCAACGACAAGTCCGCCGCTAGCGCGGCCAAGACGGCGATGGAAAAGGC
AGAGGAAACGCAACAGCTCCAGGAGAGGCTGGCGGCCATCGATGCCAGGC
TCGAGGCGCTCGAGAAGACCCGATGGGGCTTGGGGCTCGGCCCCTCCAGC
AAGCGCAGCAAAAACGACCAGGCGCCGGCGCGAACAACGGCAATGGCGCC
GTCGACGCCGGCGACGGCAAGCACGGGACAGACGATGCCGTTCGAAAGGG
CTGCAGAGGGGCTTTCCAAAAGTCCCTCGACCTCATCGACGCCAGCGGCG
GTAAAAAGCGGGGAGCAGCAGAACGCCGGCAGAGCCACCGTGTTGGCTGC
GGACTCGAAAGCTGCCGGTGATGCGGGCGAGGCGCGCCGCTCCACAGTAA
CATGGTACCAGTGGCTCACCACCGGAAGAAGATGA
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