mRNA_P-wetherbeei_contig6094.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6094.1.1
Unique NamemRNA_P-wetherbeei_contig6094.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 3.670e-86
Identity = 137/219 (62.56%), Postives = 170/219 (77.63%), Query Frame = 1
Query:    1 QVMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGGLTGDGAAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALR 657
            QV S+AFDTDGL++ VGTS+AHCL +DLRS RP  VKEH YGLP+  +     +   +  S    +       G  + N+ETPADIND+CVAHD+RGDSGL+L A EQSRV++YYVPALGPAPRWCSFLD LTEELEEE  A+VYEDYKFVT  EV +LG+ NLVGTPLLRGYMHG+FMD  L+ R++ VS+PFAY E+ KK+++EK+EEK +SRI++R
Sbjct:  253 QVSSVAFDTDGLTMGVGTSSAHCLTFDLRSSRPTFVKEHQYGLPITGIKFHQGTERRVLSSDAKTVKIWNRDDGAVVTNVETPADINDVCVAHDARGDSGLLLMATEQSRVLSYYVPALGPAPRWCSFLDVLTEELEEEQEASVYEDYKFVTTAEVEELGVSNLVGTPLLRGYMHGYFMDMKLYTRLKAVSEPFAYEEYRKKKVKEKMEEKTKSRISIR 471          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 273 bits (699), Expect = 7.070e-84
Identity = 143/228 (62.72%), Postives = 168/228 (73.68%), Query Frame = 1
Query:    1 QVMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGG--LTGDG-------AAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALR 657
            +V +LAF  DGL+L VGTS A CLLYDLRS  PL  K+H YGLPV DV   H           GG  L+ D         A G  +AN+E PA++N +CVAHD+RGDSGL++ AGEQ+RVMAYY+P LGPAPRWCSFLDSLTEELEE   ATVY+DYKFVT DEV  LGI +LVGTPLLRGYMHGFFM A LH R+R VS+PFAY  + + +L+E+VEEKR+SRIALR
Sbjct:  248 EVTALAFAPDGLTLGVGTSAAQCLLYDLRSSDPLLTKDHQYGLPVTDV-KFHSGGGAXXXXXXGGAVLSSDAKIVKAWDCADGAVLANVEAPANVNGVCVAHDARGDSGLLMLAGEQARVMAYYIPTLGPAPRWCSFLDSLTEELEEGDAATVYDDYKFVTRDEVEALGIASLVGTPLLRGYMHGFFMAAQLHNRLRAVSEPFAYEAYRRAKLRERVEEKRKSRIALR 474          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: A0A7S3UWA4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA4_HETAK)

HSP 1 Score: 248 bits (633), Expect = 3.350e-76
Identity = 130/231 (56.28%), Postives = 163/231 (70.56%), Query Frame = 1
Query:   10 SLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGGLT------GDGAAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGA------TVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALRQKV 666
            +LAF   GL LA GT+ A   LYDLR+ RPLAVKEH  GLPVID+     S + I  +    +         GA  G+ + N+E  ADIN +CVA D RGDSGL++ AGEQ RVM YYVPALGPAPRWCSFLDS+TEELEEE G       +VYEDYKFVT  E  +LG  NL+GTPL++GYMHGFFMD  L+ +++ VS+P AY EW KK+L+E+VE KR++RIAL++++
Sbjct:   11 ALAFSPCGLQLAAGTAAARAALYDLRAPRPLAVKEHQNGLPVIDMQFHGPSGERILSADAKVVKIWQNKPQHGADQGQVLTNVEASADINGVCVAKDQRGDSGLLMLAGEQPRVMTYYVPALGPAPRWCSFLDSVTEELEEEAGPGXXXXXSVYEDYKFVTRREAEELGAANLIGTPLMKGYMHGFFMDMKLYSKLKAVSEPQAYEEWRKKKLRERVEAKRENRIALQKRL 241          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: A0A3F2RWL0_9STRA (NUC153 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWL0_9STRA)

HSP 1 Score: 250 bits (638), Expect = 2.230e-75
Identity = 121/222 (54.50%), Postives = 161/222 (72.52%), Query Frame = 1
Query:    1 QVMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGGLTGDGAAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALRQKV 666
            +V +L FD DGL+  VGTS   CLLYDLRS RPL  K H YGLP++D+   HD +  +  S    +       G    N+ETPA++ D+CV   ++G SG++L AGEQ RVM+YY+P LG AP+WCSFLDSLTEELEEE  ATVY+DY+FVT  E+A  G+E+LVGTPLL+ YMHGFFMDA L+ +++ VS+PFAY EW K +L+EKVE K+ +RI +++++
Sbjct:  211 EVTALRFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKSHQYGLPIVDL-QFHDYARKVISSDAKVIKIWDRRDGAVFTNVETPAEVKDVCVVEGAQGKSGVILVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIASFGLEHLVGTPLLKAYMHGFFMDARLYNKVKAVSEPFAYDEWRKNKLKEKVEAKQANRITIQRRL 431          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: H3GLA6_PHYRM (NUC153 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLA6_PHYRM)

HSP 1 Score: 249 bits (636), Expect = 6.310e-75
Identity = 120/222 (54.05%), Postives = 162/222 (72.97%), Query Frame = 1
Query:    1 QVMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGGLTGDGAAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALRQKV 666
            +V +L FD DGL+  VGTS   CLLYDLRS RPL  K H YGLP++D+   HD +  +  S    +       G    N+ETPA++ D+CV   ++G SG++L AGEQ RVM+YY+P LG AP+WCSFLDSLTEELEEE  ATVY+DY+FVT  E+A  G+++LVGTPLL+ YMHGFFMDA L+ +++ V++PFAY EW KK+L+EKVE K+ +RI +++++
Sbjct:  235 EVTALRFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKNHQYGLPIVDL-QFHDYARKVISSDAKVIKIWDRRDGAVFTNVETPAEVKDVCVVEGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIASFGLDHLVGTPLLKAYMHGFFMDARLYNKVKAVAEPFAYDEWRKKKLKEKVEAKQSNRITIQRRL 455          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.260e-74
Identity = 119/222 (53.60%), Postives = 163/222 (73.42%), Query Frame = 1
Query:    1 QVMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGGLTGDGAAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALRQKV 666
            +V +L FD DGL+  VGTS   CLLYDLRS RPL  K+H YGLP++++   HD +  +  S    +       G    N+ETPA++ D+CV   ++G SG++L AGEQ RVM+YY+P LG AP+WCSFLDSLTEELEEE  ATVY+DY+FVT  E+A  G+++LVGTPLL+ YMHGFFMDA L+ +++ VS+PFAY +W KK+L+EKVE K+ +RI +++++
Sbjct:  236 EVTALRFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKDHQYGLPIVNL-QFHDYAQKVISSDAKVIKIWNRRDGAVFTNVETPAEVKDVCVVDGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIATFGLDHLVGTPLLKAYMHGFFMDARLYNKVKAVSEPFAYDDWRKKKLKEKVEAKQSNRITIQRRL 456          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: A0A8K1FME9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FME9_PYTOL)

HSP 1 Score: 248 bits (633), Expect = 1.560e-74
Identity = 118/222 (53.15%), Postives = 160/222 (72.07%), Query Frame = 1
Query:    1 QVMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGGLTGDGAAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALRQKV 666
            ++ SL FD DGL+  VGTS  HCLLYDLRS +PL  K H YGLP++D+   HD    +  S    +       G    N+ETP+++ D+CV   S+G SG++L AGEQ RVM+YY+P LG AP+WCSFLDSLTEELEEE  +TVY+DYKFVT  EV   G+E+LVGTPLL+ YMHGFFMDA L+ +++ +++PFAY +W K+RLQ K+E K+ +RI +++++
Sbjct:  233 EITSLEFDDDGLTFGVGTSNGHCLLYDLRSSKPLLQKTHQYGLPILDI-KFHDYGRKVLSSDAKVIKIWDKKTGDIFTNVETPSEVRDVCVVEGSQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQSTVYDDYKFVTRQEVVSFGLEHLVGTPLLKAYMHGFFMDARLYAKVKAIAEPFAYDQWRKERLQAKLEAKQANRITIQRRL 453          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: M4BWD3_HYAAE (NUC153 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWD3_HYAAE)

HSP 1 Score: 248 bits (633), Expect = 1.830e-74
Identity = 119/222 (53.60%), Postives = 161/222 (72.52%), Query Frame = 1
Query:    1 QVMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGGLTGDGAAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALRQKV 666
            ++ +L FD DGL+  VGTS   CLLYDLRS RPL  K H YGLP++++   HD +  +  S    +       G    N+ETPA + D+C+   ++G SG++L AGEQ RVM+YY+P LG AP+WCSFLDSLTEELEEE  ATVY+DY+FVT  E+A LG+++LVGTPLL+ YMHGFFMDA LH++++ V++PFAY EW KK+L EKVE K  +RI +++++
Sbjct:  236 EITALRFDDDGLTFGVGTSEGQCLLYDLRSTRPLLEKSHQYGLPIVNL-QFHDYARKVISSDAKVIKIWDRQDGAVFTNVETPAAVKDVCIVEGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIASLGLDHLVGTPLLKAYMHGFFMDARLHKKVKAVTEPFAYDEWRKKKLVEKVEAKHSNRITIQRRL 456          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: G4YXE2_PHYSP (NUC153 domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=G4YXE2_PHYSP)

HSP 1 Score: 248 bits (632), Expect = 2.560e-74
Identity = 119/222 (53.60%), Postives = 162/222 (72.97%), Query Frame = 1
Query:    1 QVMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSGLGGLTGDGAAAGRTIANIETPADINDICVAHDSRGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIALRQKV 666
            +V +L FD DGL+  VGTS   CLLYDLRS RPL  K H YGLP++D+   HD +  +  S    +       G    N+ETPA++ D+C+   ++G SG++L AGEQ RVM+YY+P LG AP+WCSFLDSLTEELEEE  ATVY+DY+FVT  E+A  G+++LVGTPLL+ YMHGFFMDA L+ +++ V++PFAY EW KK+L+EKVE K+ +RI +++++
Sbjct:  236 EVSALRFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKNHQYGLPIMDL-QFHDYARKVISSDAKVIKIWDRRDGAVFTNVETPAEVKDVCIVEGAQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEIASFGLDHLVGTPLLKAYMHGFFMDARLYNKVKAVAEPFAYDEWRKKKLKEKVEAKQANRITIQRRL 456          
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Match: W7TBN4_9STRA (Nucleolar protein 10 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBN4_9STRA)

HSP 1 Score: 248 bits (632), Expect = 4.740e-74
Identity = 129/239 (53.97%), Postives = 164/239 (68.62%), Query Frame = 1
Query:    4 VMSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRHDSSDTITGSG----LGGLTGDGAAAGRTI-ANIETPADINDICVAHDS----RGDSGLVLAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETG-------------ATVYEDYKFVTHDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKKRLQEKVEEKRQSRIAL 654
            V ++ FD DGL++AVGTS  HCLLYDLRS RPLA+KEH YGLP++ +     +   ++       + G  G G   GR +  NIETPA IND+CV  D     R DSGL++ AGEQ R+M YYVPALGPAPRWCSFLDS+TEELEE  G             A++Y+DYKFV+ +E+ +L   NL+GTPLLRGYMHGFFMDA LH ++R VSQP AY EW K R++E++E +R +RI+ 
Sbjct:  239 VSAVEFDRDGLTMAVGTSAGHCLLYDLRSSRPLALKEHQYGLPIVALKFHQRARQVLSADSKVLKVWGRDGAGLEGGRALLTNIETPAAINDLCVVPDGGGGKRNDSGLLVMAGEQERIMTYYVPALGPAPRWCSFLDSITEELEEGGGDGLEGGAGAGGGAASIYDDYKFVSREELEELNGSNLIGTPLLRGYMHGFFMDAGLHAKLRAVSQPAAYDEWRKARVRERLEARRSARISF 477          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6094.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI3.670e-8662.56NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA7.070e-8462.72WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S3UWA4_HETAK3.350e-7656.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3F2RWL0_9STRA2.230e-7554.50NUC153 domain-containing protein n=3 Tax=Phytophth... [more]
H3GLA6_PHYRM6.310e-7554.05NUC153 domain-containing protein n=1 Tax=Phytophth... [more]
A0A3M6VIN9_9STRA1.260e-7453.60NUC153 domain-containing protein n=2 Tax=Peronospo... [more]
A0A8K1FME9_PYTOL1.560e-7453.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BWD3_HYAAE1.830e-7453.60NUC153 domain-containing protein n=1 Tax=Hyalopero... [more]
G4YXE2_PHYSP2.560e-7453.60NUC153 domain-containing protein n=21 Tax=Phytopht... [more]
W7TBN4_9STRA4.740e-7453.97Nucleolar protein 10 n=1 Tax=Nannochloropsis gadit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6094contigP-wetherbeei_contig6094:325..1971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3M9
Preferred nameNOL10
PFAMsNUC153,WD40
Model size681
Max annot lvl2759|Eukaryota
KEGG koko:K14788
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Exons4
Evalue8.48e-86
EggNOG OGsKOG2321@1|root,KOG2321@2759|Eukaryota
DescriptionrRNA processing
Cds size675
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.227647-CDS-P-wetherbeei_contig6094:324..5401683186888.227647-CDS-P-wetherbeei_contig6094:324..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6094 325..540 -
1683186888.2371788-CDS-P-wetherbeei_contig6094:865..10431683186888.2371788-CDS-P-wetherbeei_contig6094:865..1043Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6094 866..1043 -
1683186888.2452602-CDS-P-wetherbeei_contig6094:1311..14571683186888.2452602-CDS-P-wetherbeei_contig6094:1311..1457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6094 1312..1457 -
1683186888.2531781-CDS-P-wetherbeei_contig6094:1830..19651683186888.2531781-CDS-P-wetherbeei_contig6094:1830..1965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6094 1831..1965 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.268999-UTR-P-wetherbeei_contig6094:1965..19711683186888.268999-UTR-P-wetherbeei_contig6094:1965..1971Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6094 1966..1971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6094.1.1prot_P-wetherbeei_contig6094.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6094 325..1965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6094.1.1

>prot_P-wetherbeei_contig6094.1.1 ID=prot_P-wetherbeei_contig6094.1.1|Name=mRNA_P-wetherbeei_contig6094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=225bp
MSLAFDTDGLSLAVGTSTAHCLLYDLRSRRPLAVKEHNYGLPVIDVWSRH
DSSDTITGSGLGGLTGDGAAAGRTIANIETPADINDICVAHDSRGDSGLV
LAAGEQSRVMAYYVPALGPAPRWCSFLDSLTEELEEETGATVYEDYKFVT
HDEVADLGIENLVGTPLLRGYMHGFFMDANLHRRMRDVSQPFAYAEWHKK
RLQEKVEEKRQSRIALRQKVREQGR
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mRNA from alignment at P-wetherbeei_contig6094:325..1971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6094.1.1 ID=mRNA_P-wetherbeei_contig6094.1.1|Name=mRNA_P-wetherbeei_contig6094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1647bp|location=Sequence derived from alignment at P-wetherbeei_contig6094:325..1971- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGATGTCGCTGGCGTTCGACACGGACGGCCTGTCGCTGGCAGTGGG CACGAGCACGGCGCACTGCCTGCTGTACGATCTCCGTTCCCGACGGCCGC TCGCCGTCAAGGAGCACAACTACGGGCTCCCCGTCATCGACGTCAGGCGA GCGATGCAAGGGAGCGAACCTGCGGGCGGAGTGGGCGGTCTTTGCATTGT TGCCGTCTTGTTTCTTCAAAGGTTTTGTGTTTTCGCGTTTCGGCTTTGCT TCTCCTTTGATGGAACCGTGTATTTGGAATGAGTGCATGTTTGGGAAGGA AACTTTAATCCTTGCTGCTTTGCTTCCCCAAGAGGATTAGGTGGACTGCC TGCCCCTTGCCCCGTCGCTGCTTTTTTGAGAGCCTGGTATAGCGCCATTT CTGACGACCATCTTGTTTGTCGCGCTGCGCCTCTCTTCGACTTGGAATCT GCTTCACAGGTTCCACCATGGCTTGGAAAGCTCCGTAATGAGCTCCGACC GAAAGATCATCAAGGTGTGGAGCCGTCACGACTCCAGCGATACCATAACC GGCAGCGGCCTTGGCGGTCTAACCGGGGATGGTGCCGCGGCGGGACGCAC CATCGCCAACATCGAGACGCCAGCCGATATTAACGACATCTGCGTGGCCC ATGACTCGAGGTGACGGGAACGGGCTTTGTGTGGCACCGAATGACATTTC TGGCACGTTTTCTGACTTTTGGCAAGAATACTCGGATTATTCCAACCTTT CGACCATTTCCGGCGGGCGTGCGAGCAACCGACCGTTAGTGTCTTTCCAG TTGCCAATCGGCTCTCTTGGCTGGTGCGAATGGAACCCCAACCCCCGGCT GTTGCTCGGCGCGGCCCACCCCATCCTACCTCTCCTTGTGTTCGATCAAA AATCAACACCCAAACCCGAAACGGCCAGGGGCGACTCGGGGCTGGTGCTG GCGGCCGGGGAGCAGTCGCGAGTCATGGCGTACTACGTGCCGGCGCTGGG CCCTGCGCCCCGCTGGTGCTCCTTCCTCGACTCGCTGACGGAGGAGCTCG AGGAGGAGACCGGCGCCACCGTCTATGAGGACTACAAGTTCGTCACCCAC GACGAGGTCCGTCTTTCCGCCGACCCTTTTCCGGCCTTTCCTTTCGGTCT TGCGTCATTTTTGCGGCCTTTTTCCCCCCATGCGAGGGCTTGTTTTATGG CGGCGCGTTTAGGGCAAGTAAAGAGGTGACAGTGAGAGGACGGCAGTCTT GTCCGATTTCTATGCCTTTCGGCTTGGCTCTCTTCGTGCTCATTGACGGT GTCTGCTATCCTATTCTTCCAAGTTGGGAGAAATGAAACCGGCAAGAGTA ACTCACTTCCCCTATAATCATTTCACAACAGCGACGGCGCTTGCGGCGGC ACTTGCAATCTTCGGCTGGCCGCGTTTACAGGTGGCAGATCTGGGCATTG AGAACTTGGTGGGTACCCCGCTGCTGCGCGGCTACATGCACGGCTTCTTC ATGGACGCCAACCTCCACCGCCGCATGCGGGACGTGTCGCAGCCTTTTGC CTACGCTGAGTGGCACAAGAAGCGCCTGCAGGAGAAGGTCGAGGAGAAGC GCCAGAGCCGCATCGCTCTGCGCCAAAAGGTGAGGGAGCAGGGAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6094:325..1971-

>mRNA_P-wetherbeei_contig6094.1.1 ID=mRNA_P-wetherbeei_contig6094.1.1|Name=mRNA_P-wetherbeei_contig6094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig6094:325..1971- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCTGGCGTTCGACACGGACGGCCTGTCGCTGGCAGTGGGCACGAG
CACGGCGCACTGCCTGCTGTACGATCTCCGTTCCCGACGGCCGCTCGCCG
TCAAGGAGCACAACTACGGGCTCCCCGTCATCGACGTGTGGAGCCGTCAC
GACTCCAGCGATACCATAACCGGCAGCGGCCTTGGCGGTCTAACCGGGGA
TGGTGCCGCGGCGGGACGCACCATCGCCAACATCGAGACGCCAGCCGATA
TTAACGACATCTGCGTGGCCCATGACTCGAGGGGCGACTCGGGGCTGGTG
CTGGCGGCCGGGGAGCAGTCGCGAGTCATGGCGTACTACGTGCCGGCGCT
GGGCCCTGCGCCCCGCTGGTGCTCCTTCCTCGACTCGCTGACGGAGGAGC
TCGAGGAGGAGACCGGCGCCACCGTCTATGAGGACTACAAGTTCGTCACC
CACGACGAGGTGGCAGATCTGGGCATTGAGAACTTGGTGGGTACCCCGCT
GCTGCGCGGCTACATGCACGGCTTCTTCATGGACGCCAACCTCCACCGCC
GCATGCGGGACGTGTCGCAGCCTTTTGCCTACGCTGAGTGGCACAAGAAG
CGCCTGCAGGAGAAGGTCGAGGAGAAGCGCCAGAGCCGCATCGCTCTGCG
CCAAAAGGTGAGGGAGCAGGGAAGG
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