mRNA_P-wetherbeei_contig607.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig607.1.1
Unique NamemRNA_P-wetherbeei_contig607.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.400e-29
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    4 VVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEMAPVGVMDDDDAGAHLVAGEVGGVPDAAPSLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            VV +DPPVVH+++VV HGRRF+RSL FSS+AS  LH + P G++D  D  AHL  G    +    PSLVVTR LY +VG Q ++P RL++G+LP  LL+QF  WQ
Sbjct: 2565 VVIKDPPVVHLYDVVSHGRRFYRSLVFSSNASQCLHHLTPCGIIDSADEYAHLAGGNALSISPPGPSLVVTRNLYSTVGLQSYIPSRLVQGLLPTCLLEQFDLWQ 2669
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.360e-24
Identity = 59/107 (55.14%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    1 VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEMAPVGVMDDDDAGAHLVAGEVGGVPDAAPSLVVTRTL-YQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            VVV +DPPVVHVF+VVEHGRRF+R+L FSSDASLSL    P G    DD GAHL AG+    P    SLV+TR    +  G    +P RLL G++P  LL+ F FWQ
Sbjct: 1708 VVVAKDPPVVHVFDVVEHGRRFYRTLAFSSDASLSLVSSPPSGASRRDDPGAHLSAGDPLSKPFRENSLVITRAAEVKGAGDSVRIPARLLLGIVPEVLLRSFHFWQ 1814
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: A0A7S1T004_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T004_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 1.450e-20
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:    1 VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEMAPVGVMDDDDA-----GAHLVAGEVGG---VPDAAPSLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            VVVYR PP VHV+ VVEHGRRFF  L F+++A+ S       G  D         GAH     VG    V  A  SLV+TR L  SVG Q F+P R L+G+LPA LL++F+FWQ
Sbjct:  642 VVVYRSPPTVHVYNVVEHGRRFFNKLIFTTNAAFSF------GAFDGKTPFLLKQGAHNYVAAVGNPMEVTTAGTSLVITRNLNASVGKQTFIPARYLQGLLPACLLEEFMFWQ 749
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: A0A2D8PPJ0_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PPJ0_9PROT)

HSP 1 Score: 94.7 bits (234), Expect = 1.920e-20
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:    1 VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLH-------EMAPVGVMDDDDAGA--HLVAGEVGGVPDAAPSLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            VVV R PP VHVF VVEHGRRF+R+L F+SDAS  +H       E AP     D  AGA   L  G+        PSLVV+R L+  +G Q ++P+R L G+LP ALL Q++FWQ
Sbjct:  225 VVVIRSPPSVHVFNVVEHGRRFYRTLVFASDASRCMHSDGGLALEAAPR-TESDAKAGACPSLSVGDAARPAPPQPSLVVSRHLHADLGEQAYIPKRFLFGLLPGALLDQYVFWQ 338
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: F0YGN6_AURAN (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=F0YGN6_AURAN)

HSP 1 Score: 94.7 bits (234), Expect = 2.020e-20
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:    1 VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLH-------EMAPVGVMDDDDAGA--HLVAGEVGGVPDAAPSLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            VVV R PP VHVF VVEHGRRF+R+L F+SDAS  +H       E AP     D  AGA   L  G+        PSLVV+R L+  +G Q ++P+R L G+LP ALL Q++FWQ
Sbjct: 1628 VVVIRSPPSVHVFNVVEHGRRFYRTLVFASDASRCMHSDGGLALEAAPR-TESDAKAGACPSLSVGDAARPAPPQPSLVVSRHLHADLGEQAYIPKRFLFGLLPGALLDQYVFWQ 1741
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: A0A7S1J6P2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J6P2_9EUGL)

HSP 1 Score: 93.6 bits (231), Expect = 5.030e-20
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:    1 VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEMAPVGV-MDDDDAGAH----LVAGEVGGVPDAAPSLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            +VV R+P VVHV++V+EHGRRFFRSL F+SD    LH +    V M  D    H    L+AG+  G    A SLV+TR L +  G Q ++P   L G+LP+AL++++ FWQ
Sbjct: 1305 IVVLREPTVVHVYDVIEHGRRFFRSLVFTSDVRWCLHNLQSTRVVMQIDPKTEHPLPGLIAGDTRGFVPPAKSLVITRNLSKQAGVQTYIPNANLHGILPSALVERYDFWQ 1415
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: W7TMJ4_9STRA (EF-Hand 1, calcium-binding site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMJ4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.130e-20
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    7 VYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEMAPVGVMDDDDAGAHLVAGEVGGVPDAAPSLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            V R+P VVHVF V+E+GRRF+R L FSSDA+LSLH      +   +D     V+G          S+++TR LY SVG Q F+P RLL G++P+A+L  + FWQ
Sbjct: 1313 VLRNPSVVHVFRVIEYGRRFYRHLIFSSDAALSLHSFEQKELATFNDR-TRFVSGTTNETSPPGFSMIITRNLYSSVGLQTFIPHRLLTGLMPSAILDAYDFWQ 1415
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: A0A7S3SRL6_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SRL6_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 6.510e-20
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEMAPVGVMDDDDAGAHLVAGEVGGVPDAAPSLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            +VV R+  VVHV++++EHGRR++RSL +SSDA++SLH ++P  V +   +  H V G +      APS+V++R L  ++G Q FVP RLL G++P ALL  +  WQ
Sbjct:    6 IVVLREGLVVHVYDLLEHGRRWWRSLAWSSDAAVSLHNLSPRTV-EARGSRVHTVMGSLQRSVPPAPSVVISRRLTAALGKQVFVPPRLLYGLIPTALLSAYDLWQ 110
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: A0A061QPM8_9CHLO (Nxn protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QPM8_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.300e-19
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:    1 VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEM---APVGVMDDDDAGAHLVAGEVGGVPDAAP---SLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            +V YR PP VHV+ VVEHGRRFFR L F+S+AS  L E+    P  V       +H      G   ++A    SLV+TR+L   +G Q F+P R L+G+LPA LL++FL WQ
Sbjct:  683 IVAYRSPPTVHVYNVVEHGRRFFRKLVFTSNASFCLGELEGCTPFLVKQ----ASHSYVAAAGNALESASAGKSLVITRSLSSELGKQTFIPPRFLQGLLPACLLEEFLMWQ 790
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BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Match: A0A061QJK6_9CHLO (Nxn protein n=4 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QJK6_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.310e-19
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:    1 VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEM---APVGVMDDDDAGAHLVAGEVGGVPDAAP---SLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQQFLFWQ 318
            +V YR PP VHV+ VVEHGRRFFR L F+S+AS  L E+    P  V       +H      G   ++A    SLV+TR+L   +G Q F+P R L+G+LPA LL++FL WQ
Sbjct: 1641 IVAYRSPPTVHVYNVVEHGRRFFRKLVFTSNASFCLGELEGCTPFLVKQ----ASHSYVAAAGNALESASAGKSLVITRSLSSELGKQTFIPPRFLQGLLPACLLEEFLMWQ 1748
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig607.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7Z7_9STRA3.400e-2954.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LRI4_ECTSI3.360e-2455.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1T004_9CHLO1.450e-2049.12Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2D8PPJ0_9PROT1.920e-2049.57Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
F0YGN6_AURAN2.020e-2049.57Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7S1J6P2_9EUGL5.030e-2045.95Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
W7TMJ4_9STRA5.130e-2047.12EF-Hand 1, calcium-binding site n=2 Tax=Monodopsid... [more]
A0A7S3SRL6_EMIHU6.510e-2045.28Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A061QPM8_9CHLO1.300e-1946.43Nxn protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=5... [more]
A0A061QJK6_9CHLO1.310e-1946.43Nxn protein n=4 Tax=Tetraselmis sp. GSL018 TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig607contigP-wetherbeei_contig607:117..434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRI4
Preferred nameENAH
PFAMsEF-hand_4,RasGEF,RasGEF_N,SH3_1,SH3_2,SH3_9,VASP_tetra,WH1
Model size318
Max annot lvl2759|Eukaryota
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.5e-25
EggNOG OGsKOG1029@1|root,KOG1029@2759|Eukaryota
Descriptionpositive regulation of caveolin-mediated endocytosis
Cds size318
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186886.764718-CDS-P-wetherbeei_contig607:116..4341683186886.764718-CDS-P-wetherbeei_contig607:116..434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig607 117..434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig607.1.1prot_P-wetherbeei_contig607.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig607 117..434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig607.1.1

>prot_P-wetherbeei_contig607.1.1 ID=prot_P-wetherbeei_contig607.1.1|Name=mRNA_P-wetherbeei_contig607.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
VVVYRDPPVVHVFEVVEHGRRFFRSLCFSSDASLSLHEMAPVGVMDDDDA
GAHLVAGEVGGVPDAAPSLVVTRTLYQSVGPQKFVPERLLRGVLPAALLQ
QFLFWQ
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mRNA from alignment at P-wetherbeei_contig607:117..434-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig607.1.1 ID=mRNA_P-wetherbeei_contig607.1.1|Name=mRNA_P-wetherbeei_contig607.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig607:117..434- (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGTGTACCGGGATCCGCCGGTGGTGCACGTATTCGAAGTGGTCGA
GCACGGCCGCCGCTTCTTCCGCTCCCTCTGCTTCAGCTCCGATGCCTCCC
TCTCCCTCCACGAGATGGCCCCCGTGGGCGTGATGGACGATGATGATGCC
GGCGCTCACCTCGTGGCCGGGGAAGTCGGAGGGGTGCCGGACGCGGCGCC
GAGCCTGGTGGTTACGAGGACGCTGTACCAGTCGGTGGGGCCGCAGAAGT
TCGTGCCGGAGCGGCTGCTGCGGGGCGTGCTGCCGGCGGCGCTGCTGCAG
CAGTTCCTCTTCTGGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig607:117..434-

>mRNA_P-wetherbeei_contig607.1.1 ID=mRNA_P-wetherbeei_contig607.1.1|Name=mRNA_P-wetherbeei_contig607.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig607:117..434- (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGTGTACCGGGATCCGCCGGTGGTGCACGTATTCGAAGTGGTCGA
GCACGGCCGCCGCTTCTTCCGCTCCCTCTGCTTCAGCTCCGATGCCTCCC
TCTCCCTCCACGAGATGGCCCCCGTGGGCGTGATGGACGATGATGATGCC
GGCGCTCACCTCGTGGCCGGGGAAGTCGGAGGGGTGCCGGACGCGGCGCC
GAGCCTGGTGGTTACGAGGACGCTGTACCAGTCGGTGGGGCCGCAGAAGT
TCGTGCCGGAGCGGCTGCTGCGGGGCGTGCTGCCGGCGGCGCTGCTGCAG
CAGTTCCTCTTCTGGCAG
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