mRNA_P-wetherbeei_contig59280.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59280.1.1
Unique NamemRNA_P-wetherbeei_contig59280.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59280.1.1 vs. uniprot
Match: A0A7Y4W0A1_9GAMM (TonB-dependent receptor n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A7Y4W0A1_9GAMM)

HSP 1 Score: 79.3 bits (194), Expect = 9.570e-15
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:    4 WERFERPIGASDEGFTLVDTWFAPLCLRTFWPNGLSASATVTYVKQRGTFFDVFLTNIYDGRSEFAIADFLIRYQMPRRQGAIAIGVRNAFNQHFLFQSTDRVGS 318
            +ERF+R     + G   V T + PL L  F  +G S     TYV Q G FF+ F   IY G S F + D  + Y++P R G +++GV+N FN HF +QST+++ S
Sbjct:  988 YERFDRKANPLNTGIVDVKTHWIPLTLNIFHASGASMMLKSTYVNQYG-FFEKF-GEIYPGNSNFFVFDVNLNYRLPSRYGMVSLGVKNLFNNHFQYQSTNQINS 1090
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59280.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y4W0A1_9GAMM9.570e-1540.00TonB-dependent receptor n=1 Tax=Methylococcaceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59280contigP-wetherbeei_contig59280:5..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog671143.DAMO_1319
PFAMsFecR,Plug,STN,TPR_16,TPR_8,TonB_dep_Rec
Model size372
Max annot lvl2|Bacteria
KEGG koko:K02014,ko:K16087
KEGG TC1.B.14,1.B.14.2
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.26e-13
EggNOG OGsCOG0457@1|root,COG3712@1|root,COG4773@1|root,COG0457@2|Bacteria,COG3712@2|Bacteria,COG4773@2|Bacteria
DescriptionReceptor
Cds size372
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.9711337-CDS-P-wetherbeei_contig59280:4..3761683186875.9711337-CDS-P-wetherbeei_contig59280:4..376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59280 5..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59280.1.1prot_P-wetherbeei_contig59280.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59280 5..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59280.1.1

>prot_P-wetherbeei_contig59280.1.1 ID=prot_P-wetherbeei_contig59280.1.1|Name=mRNA_P-wetherbeei_contig59280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
RWERFERPIGASDEGFTLVDTWFAPLCLRTFWPNGLSASATVTYVKQRGT
FFDVFLTNIYDGRSEFAIADFLIRYQMPRRQGAIAIGVRNAFNQHFLFQS
TDRVGSPIEMGRFGFASFELFFH*
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mRNA from alignment at P-wetherbeei_contig59280:5..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59280.1.1 ID=mRNA_P-wetherbeei_contig59280.1.1|Name=mRNA_P-wetherbeei_contig59280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig59280:5..376+ (Phaeothamnion wetherbeei SAG_119_79)
CGATGGGAACGATTTGAACGCCCAATAGGAGCAAGTGATGAAGGGTTTAC
TTTAGTCGATACATGGTTCGCTCCGCTCTGCCTTCGCACATTTTGGCCCA
ACGGGCTTTCAGCGTCAGCGACTGTGACTTATGTAAAGCAGCGTGGCACA
TTCTTTGACGTATTTCTAACAAACATCTACGACGGACGATCTGAGTTTGC
CATCGCGGACTTCTTAATTAGATACCAAATGCCTCGTCGACAGGGCGCAA
TCGCAATTGGCGTGAGAAACGCCTTCAATCAACATTTCCTATTTCAGTCT
ACCGATCGAGTGGGGTCGCCCATCGAGATGGGAAGGTTTGGATTCGCAAG
CTTCGAGCTCTTTTTCCATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59280:5..376+

>mRNA_P-wetherbeei_contig59280.1.1 ID=mRNA_P-wetherbeei_contig59280.1.1|Name=mRNA_P-wetherbeei_contig59280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig59280:5..376+ (Phaeothamnion wetherbeei SAG_119_79)
CGATGGGAACGATTTGAACGCCCAATAGGAGCAAGTGATGAAGGGTTTAC
TTTAGTCGATACATGGTTCGCTCCGCTCTGCCTTCGCACATTTTGGCCCA
ACGGGCTTTCAGCGTCAGCGACTGTGACTTATGTAAAGCAGCGTGGCACA
TTCTTTGACGTATTTCTAACAAACATCTACGACGGACGATCTGAGTTTGC
CATCGCGGACTTCTTAATTAGATACCAAATGCCTCGTCGACAGGGCGCAA
TCGCAATTGGCGTGAGAAACGCCTTCAATCAACATTTCCTATTTCAGTCT
ACCGATCGAGTGGGGTCGCCCATCGAGATGGGAAGGTTTGGATTCGCAAG
CTTCGAGCTCTTTTTCCATTGA
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