mRNA_P-wetherbeei_contig5908.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5908.1.1
Unique NamemRNA_P-wetherbeei_contig5908.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5908.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5908contigP-wetherbeei_contig5908:2..1606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1101
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-26_000400.1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.4766262-UTR-P-wetherbeei_contig5908:1..2061683186873.4766262-UTR-P-wetherbeei_contig5908:1..206Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5908 2..206 +
1683186873.5193374-UTR-P-wetherbeei_contig5908:1322..16061683186873.5193374-UTR-P-wetherbeei_contig5908:1322..1606Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5908 1323..1606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.4882605-CDS-P-wetherbeei_contig5908:206..3281683186873.4882605-CDS-P-wetherbeei_contig5908:206..328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5908 207..328 +
1683186873.4988008-CDS-P-wetherbeei_contig5908:590..7031683186873.4988008-CDS-P-wetherbeei_contig5908:590..703Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5908 591..703 +
1683186873.5089953-CDS-P-wetherbeei_contig5908:945..13221683186873.5089953-CDS-P-wetherbeei_contig5908:945..1322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5908 946..1322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5908.1.1prot_P-wetherbeei_contig5908.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5908 207..1322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5908.1.1

>prot_P-wetherbeei_contig5908.1.1 ID=prot_P-wetherbeei_contig5908.1.1|Name=mRNA_P-wetherbeei_contig5908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=204bp
MLSPSLLGRLSGGRKTLLSDSRDRSKAVGGIERRLSRLTTRWATTSGSAG
PGSSPPPTATLCRSRQPRNECGGRQVNAVKRRRKRCGKYDAGGCATTRTN
CVGPPVSDMIVELQCPPGTAAYCFIIDNIAAAVDDAPPGDGPFIRRQRHR
FKPARAVPMTAPGAVAGGMSVWRPCRRQRRRFPLEARGCLLYYVGGAKSM
LLS*
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mRNA from alignment at P-wetherbeei_contig5908:2..1606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5908.1.1 ID=mRNA_P-wetherbeei_contig5908.1.1|Name=mRNA_P-wetherbeei_contig5908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1605bp|location=Sequence derived from alignment at P-wetherbeei_contig5908:2..1606+ (Phaeothamnion wetherbeei SAG_119_79)
ACGTTGACAGTTCCATCCTCTCACTCTGAACTCAGCATGAGGAAGTAATA
TAGTTTTGGGCCCGGGATAAGAGCCGTTATCTCTTTATGATGGTCAATCA
ACAATAGCTCCCAGGGATATGGCCGAGGCCGAGGCGGCGGCCGCGGCGGC
GGCGGTGGCAGGCGACACGGCCGGTGACAGTTAGTCGAAGGCGTCGGCAG
GCGACATGCTGTCGCCTTCGCTGCTCGGACGACTGAGCGGCGGCAGGAAG
ACGCTACTGAGCGATTCGCGAGATCGCTCGAAAGCTGTAGGAGGTATTGA
GCGCCGTTTGTCGAGGCTAACAACGAGGCGAGTGTGGTTTCATTTGTGCG
TCATTACTTGGGTGTGTTTTTCCTTGTTTCCGGGCCAGTTCGAGGGTCCT
GAAAAGCTGACTTGTCTGCTTCTGTTGCAAAGGCCTCTGCAACCAAACGC
ATCTTTCAAACCCGGCCGACCGGTCAGCGGAGTTGTACGCTAGCCGCCAT
CTGATCCATGCCATCTTTCCTGCCAATCCGTATTCAGCTCATGCCCTGTC
TTATTTCCCCAGTCCCCCCGCTGGCTGCTGCGCCCACAGGTGGGCGACGA
CATCAGGCAGCGCGGGACCCGGATCGTCGCCGCCGCCCACGGCGACCTTA
TGCCGCTCTCGGCAACCCCGAAATGAATGTGGTGGTAGGCAGGTTAATGC
AGGTGCGTTGGGCCGGTGAAAGAAGAGAGGTTTTCCTCTCCGTACGTTTT
TGTTTGGGTAGGCGTTGAACTTCCGTTTTTCCGGTTGTCACGGCAGCGGC
GGCGGCGGCGGCGGCGGTGGGGGCGGCGGCAACGGCAGTGCGTTCGGCAG
CAGAGTGCCTTCGCCATTGGATCAATCATATGACGCTAACCCTAACCCTA
TTGCTGTGTCTCCCTCCCTCCTTCTCTTTCATCGGTTTCGCCAGTTAAAC
GCCGTCGGAAGCGGTGCGGCAAATATGACGCCGGAGGATGCGCCACCACA
CGCACGAATTGCGTGGGCCCGCCGGTTTCCGACATGATTGTAGAGCTGCA
GTGCCCGCCCGGCACCGCCGCCTACTGTTTTATTATCGATAACATAGCAG
CCGCCGTCGACGATGCACCGCCGGGCGACGGCCCTTTTATCCGGCGACAG
CGGCACCGTTTCAAGCCTGCACGTGCCGTTCCTATGACGGCTCCTGGCGC
TGTTGCCGGCGGCATGTCTGTCTGGCGACCTTGTAGAAGACAGCGGCGAC
GTTTCCCTCTTGAAGCCAGAGGATGCTTATTATACTATGTTGGCGGAGCC
AAGAGCATGCTGCTAAGTTAGTGGGCCAGAGGTAGACCGCTAGATTGTGG
CTGCCGGTTTTTATGGCGCATGTTGCAAGTGAAAATGCTGGTGACCGTGA
GGGGATGGGCAACGCCCAGACCGGTGAGCTTTGTTTCCACGGCAAAACTT
AAGGCTATGACGTTTACGAACTATTGCGAAAGAAGGGAACGGTGGTGTTC
TGTCTCTGGCAACGATAGAACTTTAGAGTCCATTGAAATATCGCAGAAAG
CTTCCTATTAGAAAACTTCGTGTTCAAAGCCTGCACAATAACTTGCATGA
GCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5908:2..1606+

>mRNA_P-wetherbeei_contig5908.1.1 ID=mRNA_P-wetherbeei_contig5908.1.1|Name=mRNA_P-wetherbeei_contig5908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig5908:2..1606+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTCGCCTTCGCTGCTCGGACGACTGAGCGGCGGCAGGAAGACGCT
ACTGAGCGATTCGCGAGATCGCTCGAAAGCTGTAGGAGGTATTGAGCGCC
GTTTGTCGAGGCTAACAACGAGGTGGGCGACGACATCAGGCAGCGCGGGA
CCCGGATCGTCGCCGCCGCCCACGGCGACCTTATGCCGCTCTCGGCAACC
CCGAAATGAATGTGGTGGTAGGCAGGTTAATGCAGTTAAACGCCGTCGGA
AGCGGTGCGGCAAATATGACGCCGGAGGATGCGCCACCACACGCACGAAT
TGCGTGGGCCCGCCGGTTTCCGACATGATTGTAGAGCTGCAGTGCCCGCC
CGGCACCGCCGCCTACTGTTTTATTATCGATAACATAGCAGCCGCCGTCG
ACGATGCACCGCCGGGCGACGGCCCTTTTATCCGGCGACAGCGGCACCGT
TTCAAGCCTGCACGTGCCGTTCCTATGACGGCTCCTGGCGCTGTTGCCGG
CGGCATGTCTGTCTGGCGACCTTGTAGAAGACAGCGGCGACGTTTCCCTC
TTGAAGCCAGAGGATGCTTATTATACTATGTTGGCGGAGCCAAGAGCATG
CTGCTAAGTTAG
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