mRNA_P-wetherbeei_contig59012.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59012.1.1
Unique NamemRNA_P-wetherbeei_contig59012.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: UPI0016055838 (uncharacterized protein LOC118438167 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI0016055838)

HSP 1 Score: 88.6 bits (218), Expect = 3.040e-18
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 MESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTK 273
            MESEY++L   A+EA  LR  L  LG  Q +PT+IH DN +A+ +        +S+HI +RYH+TRELV+ G   +E V T++Q+ADGLTK
Sbjct:  349 MESEYISLASGAREAVWLRRFLEELGFPQESPTIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLTK 439
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BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A226DUK4_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DUK4_FOLCA)

HSP 1 Score: 88.6 bits (218), Expect = 3.120e-18
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 MESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTK 273
            MESEY++L   A+EA  LR  L  LG  Q +PT+IH DN +A+ +        +S+HI +RYH+TRELV+ G   +E V T++Q+ADGLTK
Sbjct: 1244 MESEYISLASGAREAVWLRRFLEELGFPQESPTIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLTK 1334
[Close]
BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A182GY63_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GY63_AEDAL)

HSP 1 Score: 80.1 bits (196), Expect = 3.120e-17
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 MESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTKDVGQERL 294
            ME+EY+AL  AAQEA  LR LL  L  +Q   T ++EDN + L         ++S+HI IRYH+TR++ A GV  ++  ++ D +AD LTK +G ER+
Sbjct:    1 MEAEYVALSGAAQEAVWLRGLLDELDEKQVQATTVYEDNRSCLDFVALDHQKKRSKHIDIRYHYTRDVCATGVIDLQYCTSEDMIADILTKPLGAERV 98
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BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 84.7 bits (208), Expect = 6.680e-17
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    4 ESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTKDVGQERLLALR 306
            E+EYMAL  AAQEA  +R L+  L + Q  PTV+ EDN +A+ +A  +    +++HI I+YHF RE +A GV  ++  +T D +AD  TK + QE+ + LR
Sbjct:  641 EAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTKGLSQEKFVKLR 741
[Close]
BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A226DW10_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DW10_FOLCA)

HSP 1 Score: 84.7 bits (208), Expect = 7.000e-17
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 MESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTK 273
            MESEY++L   A+EA  LR  L  LG  Q +P +IH DN +A+ +        +S+HI +RYH+TRELV+ G   +E V T++Q+ADGL+K
Sbjct: 1244 MESEYISLASGAREAVWLRRFLEELGFPQESPKIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLSK 1334
[Close]
BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A482ZNW2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A482ZNW2_9GAMM)

HSP 1 Score: 83.6 bits (205), Expect = 8.760e-17
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    4 ESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTKDVGQERLLALR 306
            ESEYMAL  AAQEA  +R L + LG  Q+ PT+I+EDN +A+A+A       +S+HI I+YHF RE V+     ++   T D +AD LTK +G E+   LR
Sbjct:  236 ESEYMALSSAAQEAVWIRELNSDLGNPQSQPTLIYEDNQSAIAMAKNPQFHGRSKHIGIKYHFIREQVSNDKICLQYCPTEDMIADILTKGIGPEKFEKLR 336
[Close]
BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A2I0WA99_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WA99_9ASPA)

HSP 1 Score: 80.1 bits (196), Expect = 1.910e-16
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:    4 ESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTKDVGQERLLALRAR 312
            E+EY +L  AA +   LR L A L + Q +PT IH DNT+A+A+A       +++HI I YHF R+ + +G   +E +S+ADQ+AD LTK     R + LR++
Sbjct:   82 EAEYRSLSAAASDVIWLRRLAAELQLTQQSPTTIHCDNTSAMAIAKNPVFHARTKHIEIDYHFIRQQINSGNIKLEHISSADQIADILTKPFSVSRFMELRSK 184
[Close]
BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A182GAZ5_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GAZ5_AEDAL)

HSP 1 Score: 80.1 bits (196), Expect = 5.070e-16
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 MESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTKDVGQERL 294
            ME+EY+AL  AAQEA  LR LL  L  +Q   T ++EDN + L         ++S+HI IRYH+TR++ A GV  ++  ++ D +AD LTK +G ER+
Sbjct:  132 MEAEYVALSGAAQEAVWLRGLLDELDEKQVQATTVYEDNRSCLDFVALDHQKKRSKHIDIRYHYTRDVCATGVIDLQYCTSEDMIADILTKPLGAERV 229
[Close]
BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A182G978_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G978_AEDAL)

HSP 1 Score: 74.7 bits (182), Expect = 3.960e-15
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    1 MESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTKDVGQERLLALRAR 312
            MESEY+AL DAAQEA  LR LLA LG  Q +PTV++EDN + +         ++S+HI  RY+  ++L A GV  +    + + + D  TK +G  +L   R +
Sbjct:    1 MESEYVALSDAAQEAVWLRRLLAELGHNQQSPTVVNEDNRSFIDFVSLERQNKRSKHIDTRYYHAKDLCARGVIQLCYCPSDNMVVDVFTKPLGPVKLQTFREK 104
[Close]
BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Match: A0A2I0VYP1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VYP1_9ASPA)

HSP 1 Score: 79.3 bits (194), Expect = 4.880e-15
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:    4 ESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAGHARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTKDVGQERLLALRAR 312
            E+EY +L  AA +   LR L A L + Q +PT IH DNT+A+A+A       +++HI I YHF R+ + +G   +E +S+ADQ+AD LTK     R L LR +
Sbjct:  382 EAEYRSLSAAASDVIWLRRLAAELQLPQPSPTTIHCDNTSAMAIAKNPVFHARTKHIEIDYHFIRQQLHSGNIKLEHISSADQIADILTKPFSISRFLELRTK 484
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59012.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00160558383.040e-1848.35uncharacterized protein LOC118438167 n=1 Tax=Folso... [more]
A0A226DUK4_FOLCA3.120e-1848.35Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]
A0A182GY63_AEDAL3.120e-1743.88Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A498M2F0_LABRO6.680e-1743.56Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A226DW10_FOLCA7.000e-1746.15Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]
A0A482ZNW2_9GAMM8.760e-1746.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0WA99_9ASPA1.910e-1641.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GAZ5_AEDAL5.070e-1643.88Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A182G978_AEDAL3.960e-1540.38Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A2I0VYP1_9ASPA4.880e-1542.72Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59012contigP-wetherbeei_contig59012:120..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size324
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.36e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size324
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.949402-CDS-P-wetherbeei_contig59012:119..4431683186872.949402-CDS-P-wetherbeei_contig59012:119..443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59012 120..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59012.1.1prot_P-wetherbeei_contig59012.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59012 120..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59012.1.1

>prot_P-wetherbeei_contig59012.1.1 ID=prot_P-wetherbeei_contig59012.1.1|Name=mRNA_P-wetherbeei_contig59012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MESEYMALFDAAQEAEQLRTLLAHLGMEQTAPTVIHEDNTTALAVAMAAG
HARQSRHIRIRYHFTRELVAAGVFVVEQVSTADQLADGLTKDVGQERLLA
LRARTMG*
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mRNA from alignment at P-wetherbeei_contig59012:120..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59012.1.1 ID=mRNA_P-wetherbeei_contig59012.1.1|Name=mRNA_P-wetherbeei_contig59012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig59012:120..443+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAGCGAGTACATGGCGCTCTTCGACGCGGCACAGGAGGCGGAGCA
GCTACGGACGCTGCTGGCTCATCTGGGCATGGAGCAGACAGCGCCAACGG
TGATCCACGAGGACAACACGACGGCGCTGGCGGTGGCGATGGCGGCTGGA
CACGCGCGCCAGTCGCGCCACATCCGCATCCGCTACCACTTCACGCGGGA
GCTGGTGGCGGCGGGCGTGTTCGTCGTGGAGCAGGTCAGCACGGCTGACC
AGCTGGCCGACGGTCTGACAAAGGATGTCGGGCAGGAGCGGCTACTGGCG
CTTCGGGCTCGCACGATGGGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59012:120..443+

>mRNA_P-wetherbeei_contig59012.1.1 ID=mRNA_P-wetherbeei_contig59012.1.1|Name=mRNA_P-wetherbeei_contig59012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig59012:120..443+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAGCGAGTACATGGCGCTCTTCGACGCGGCACAGGAGGCGGAGCA
GCTACGGACGCTGCTGGCTCATCTGGGCATGGAGCAGACAGCGCCAACGG
TGATCCACGAGGACAACACGACGGCGCTGGCGGTGGCGATGGCGGCTGGA
CACGCGCGCCAGTCGCGCCACATCCGCATCCGCTACCACTTCACGCGGGA
GCTGGTGGCGGCGGGCGTGTTCGTCGTGGAGCAGGTCAGCACGGCTGACC
AGCTGGCCGACGGTCTGACAAAGGATGTCGGGCAGGAGCGGCTACTGGCG
CTTCGGGCTCGCACGATGGGATAA
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