mRNA_P-wetherbeei_contig58864.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58864.1.1
Unique NamemRNA_P-wetherbeei_contig58864.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58864.1.1 vs. uniprot
Match: UPI0016641677 (hypothetical protein n=1 Tax=Polymorphobacter glacialis TaxID=1614636 RepID=UPI0016641677)

HSP 1 Score: 65.5 bits (158), Expect = 2.760e-10
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:  193 RQQLSGRRP---SQGDASLTAIEAVGTPVAIEELVDRVESMGVKLTGRKLVNLSSSLSRDPRFVSISWRGGRKWWLAGKELPSS 435
            ++ LSG+ P   SQGDA+   +     P+ + +L+  VE  G+ LTG K+ N  S++SRD RF S+ + G   WW AG ELP +
Sbjct:   72 KEILSGKPPKPLSQGDAAEIVLRTTDMPLRLGDLLAGVEEQGLVLTGDKVANFRSNISRDRRFYSLKFDGQYLWWFAGVELPKA 155
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BLAST of mRNA_P-wetherbeei_contig58864.1.1 vs. uniprot
Match: UPI001EE1C35A (winged helix-turn-helix domain-containing protein n=1 Tax=Methylobacterium gregans TaxID=374424 RepID=UPI001EE1C35A)

HSP 1 Score: 62.4 bits (150), Expect = 2.920e-9
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 1 
Query:   22 VRDLQRLRNEASARLKSNPDYLAIQEIDRSI-----AAVMKQLEASGTVTASVAAPSTPAATRQQL--SGRRPSQGDASLTAIEAVGTPVAIEELVDRVESMGVKLTGRKL-VNLSSSLSRDPRFVSISWRGGRKWWL 411
            V +L++L +    RLK N D++A+Q + R+I     A ++  + +S +  ++V+  +  A  RQ    SG  PSQ DA+   ++  G  ++I ELV    + G  + G    +NLSSSLSRD RF+S+   G   W L
Sbjct:    4 VDELRKLEDAIEQRLKLNSDFVALQAVKRAIRDIVNAGMVADMPSSPSTASNVSFSNVRARLRQAQTPSGGSPSQADAAFAILKEKGEVLSISELVPLARARGAIVGGNNPELNLSSSLSRDGRFISLRIAGRPMWGL 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58864.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00166416772.760e-1040.48hypothetical protein n=1 Tax=Polymorphobacter glac... [more]
UPI001EE1C35A2.920e-934.06winged helix-turn-helix domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58864contigP-wetherbeei_contig58864:42..488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size447
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.506323-CDS-P-wetherbeei_contig58864:41..4881683186870.506323-CDS-P-wetherbeei_contig58864:41..488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58864 42..488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58864.1.1prot_P-wetherbeei_contig58864.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58864 42..488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58864.1.1

>prot_P-wetherbeei_contig58864.1.1 ID=prot_P-wetherbeei_contig58864.1.1|Name=mRNA_P-wetherbeei_contig58864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MVDTPPVVRDLQRLRNEASARLKSNPDYLAIQEIDRSIAAVMKQLEASGT
VTASVAAPSTPAATRQQLSGRRPSQGDASLTAIEAVGTPVAIEELVDRVE
SMGVKLTGRKLVNLSSSLSRDPRFVSISWRGGRKWWLAGKELPSSGGSL
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mRNA from alignment at P-wetherbeei_contig58864:42..488-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58864.1.1 ID=mRNA_P-wetherbeei_contig58864.1.1|Name=mRNA_P-wetherbeei_contig58864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig58864:42..488- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGATACCCCACCCGTTGTTCGAGATCTTCAGCGGCTCAGGAACGA
GGCCTCTGCGCGGCTTAAATCGAACCCCGACTATTTGGCGATTCAGGAGA
TCGACAGATCGATCGCAGCAGTGATGAAGCAACTTGAAGCTTCGGGCACG
GTTACGGCTTCCGTAGCTGCGCCAAGCACACCTGCTGCTACTCGTCAGCA
ACTCAGCGGTCGTAGGCCCAGTCAGGGTGACGCTTCACTCACAGCCATCG
AAGCAGTCGGCACACCTGTGGCGATTGAGGAACTGGTCGACCGCGTGGAA
TCCATGGGTGTTAAGCTGACCGGCCGGAAACTAGTCAACCTATCGTCTTC
GCTATCGCGCGATCCGAGGTTTGTTTCGATATCTTGGCGCGGGGGCAGAA
AATGGTGGCTAGCTGGCAAAGAGCTTCCTAGCAGCGGAGGATCACTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58864:42..488-

>mRNA_P-wetherbeei_contig58864.1.1 ID=mRNA_P-wetherbeei_contig58864.1.1|Name=mRNA_P-wetherbeei_contig58864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig58864:42..488- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGATACCCCACCCGTTGTTCGAGATCTTCAGCGGCTCAGGAACGA
GGCCTCTGCGCGGCTTAAATCGAACCCCGACTATTTGGCGATTCAGGAGA
TCGACAGATCGATCGCAGCAGTGATGAAGCAACTTGAAGCTTCGGGCACG
GTTACGGCTTCCGTAGCTGCGCCAAGCACACCTGCTGCTACTCGTCAGCA
ACTCAGCGGTCGTAGGCCCAGTCAGGGTGACGCTTCACTCACAGCCATCG
AAGCAGTCGGCACACCTGTGGCGATTGAGGAACTGGTCGACCGCGTGGAA
TCCATGGGTGTTAAGCTGACCGGCCGGAAACTAGTCAACCTATCGTCTTC
GCTATCGCGCGATCCGAGGTTTGTTTCGATATCTTGGCGCGGGGGCAGAA
AATGGTGGCTAGCTGGCAAAGAGCTTCCTAGCAGCGGAGGATCACTA
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