mRNA_P-wetherbeei_contig58794.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58794.1.1
Unique NamemRNA_P-wetherbeei_contig58794.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: A0A7C3AMC7_9CHLR (Polysaccharide deacetylase n=2 Tax=Thermorudis TaxID=1649508 RepID=A0A7C3AMC7_9CHLR)

HSP 1 Score: 159 bits (403), Expect = 1.530e-45
Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    1 LDEPVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQF 477
            LD+P   S G +   VGTP IL+L++   +K+TFF PGW  EQ+P ++EA+   GHE+  HGYLHE P  L  EQE EV+ +G  AL  +TG+ P GYRSP W+FSANT++LL E GF+Y+S+ M   LP  +       ++I LP  W+L DA +F F
Sbjct:   32 LDKPGMLSHGTYGARVGTPLILQLLRQNDIKATFFVPGWTVEQHPDIIEAIRDQGHELAHHGYLHERPTELTREQEAEVLVKGIEALRRITGEAPRGYRSPAWEFSANTLQLLEEHGFRYSSNLMSHFLPWQHP----DTEIIELPVQWLLDDAPFFLF 186          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: A0A3A0AYM7_9CHLR (Ribulose phosphate epimerase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AYM7_9CHLR)

HSP 1 Score: 154 bits (389), Expect = 1.650e-43
Identity = 74/159 (46.54%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    1 LDEPVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQF 477
            L+ P   S G +   V  P IL+L++   LK+TFFTPGW AE +P ++EAV + GHEIG HG++HE   +L+ + E EV+++G  AL+A+TG  P GYRSP W+FS NT+ LLH  GF Y+S+ M   +P  +  SG    ++ LP SW+L DA +F F
Sbjct:   32 LNRPGMLSQGTYGARVAVPLILDLLRRHELKATFFTPGWTAENHPLIIEAVHRQGHEIGHHGWIHEHTTTLSRDGEEEVLQKGIRALKAITGVNPRGYRSPSWEFSTNTLDLLHAYGFTYSSNLMSHFIPWVHTESG----IVELPVSWLLDDAPFFMF 186          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: A0A7C5RTW7_THERO (Polysaccharide deacetylase n=3 Tax=Bacteria TaxID=2 RepID=A0A7C5RTW7_THERO)

HSP 1 Score: 152 bits (383), Expect = 1.350e-42
Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   22 SAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQF 477
            S G +   VG P +L +++ F L++TFF PGW+AE +P +V A+   GHEIG HGYLHEP   L+EE ER V+ RG  AL+ +TG+ P+GYRSP W+ +  T+RLL + GF+Y+S+ M   LP  +        +I LP  W+L DA +F F
Sbjct:   39 SQGTYGARVGVPLVLHVLRRFDLQATFFVPGWVAEHHPDIVAAIVDQGHEIGHHGYLHEPMSDLSEEDERRVLERGIEALQRVTGRTPLGYRSPSWELTGRTLRLLEQYGFRYSSNLMSHFLPWQHP----DTRLIELPVQWLLDDAPFFLF 186          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: D1CA38_SPHTD (Polysaccharide deacetylase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) TaxID=479434 RepID=D1CA38_SPHTD)

HSP 1 Score: 151 bits (381), Expect = 1.640e-42
Identity = 72/159 (45.28%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    1 LDEPVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQF 477
            L++P   S G +   V  P IL+L++  G+++TFF PGW AE +  ++ AV + GHEIG HGYLHE P +L  E+E EV+ RG  AL+A++G+ PVGYRSP W+FSA+T+ LL   GF+Y+S+ M   +P  +       D++ LP  W+L DA +F F
Sbjct:   32 LNQPGMLSQGTYGARVAVPLILDLLERAGIRATFFVPGWTAETHADVIRAVHERGHEIGHHGYLHEQPTALAPEEEAEVLVRGINALQAISGEAPVGYRSPAWEFSAHTLDLLQRHGFRYSSNLMSDFVPWVHP----GTDIVELPVQWLLDDAPFFLF 186          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: UPI00196229A1 (polysaccharide deacetylase n=1 Tax=Nakamurella flavida TaxID=363630 RepID=UPI00196229A1)

HSP 1 Score: 149 bits (377), Expect = 1.020e-41
Identity = 72/159 (45.28%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    1 LDEPVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQF 477
            +D P A S G +  N G P IL+L+  + L +TFF PG  A+++P   + +A  GHE+G HGYLHEPPP L  EQERE++ RG  AL+  TGQRP GYRSP W+ S NT  LL E G +Y +  +    P +    G+  D++ +PG+W L D+  F F
Sbjct:   36 VDTPSALSRGAYGANEGVPRILKLLDKYDLPATFFIPGDTADRHPAETKDIAAAGHELGHHGYLHEPPPGLTLEQEREMLERGFDALDRQTGQRPRGYRSPAWELSHNTFALLGEMGIEYDASQLAADRPYWVHDQGERTDIVEIPGAWELCDSSLFMF 194          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: A0A7C7TRE9_9CHLR (Polysaccharide deacetylase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C7TRE9_9CHLR)

HSP 1 Score: 148 bits (373), Expect = 3.380e-41
Identity = 73/159 (45.91%), Postives = 102/159 (64.15%), Query Frame = 1
Query:    4 DEPVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLN-EEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQF 477
            D P A S G+F   VGT  IL+L++   +++TFF PGW+AE++  +V+ VA  GH++  HGYLHEPP SL   E E  ++  GS  LE +TG+RP GYRSP W+ SA+++RLLHE GF Y S  M   +P +    G+S+  + LP  W L DA Y+ +
Sbjct:   37 DHPSAISMGEFGPRVGTARILDLLEKHDIQATFFVPGWVAERHESIVKYVAASGHQVAHHGYLHEPPSSLGPHESEGGILDLGSDILEGITGERPKGYRSPSWELSADSLRLLHERGFVYDSSLMGDDIPYFVGEEGQSL--VELPVHWALDDAPYYTY 193          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: A0A6G1SUC8_9CHLR (Polysaccharide deacetylase family protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6G1SUC8_9CHLR)

HSP 1 Score: 147 bits (371), Expect = 7.480e-41
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 1
Query:   10 PVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQFH 480
            P ARS G+F   V  P ILEL+  + + ++F+ PGW+AE++P+ V ++A  GHE+G HGYLHE P SL+ E E EV+ RGSA L+A+TGQ P GYRSP W+ S +++ LL E GF Y S  M    P     S     ++ +P  W L DA  F F+
Sbjct:   36 PSARSMGEFGPRVAVPRILELLHEYDVPASFYVPGWVAERWPEAVTSIAAAGHEVGHHGYLHEAPASLSRETEAEVLDRGSAILQAITGQPPEGYRSPSWELSEHSLALLAERGFLYDSSLMGDDAPYAVSASEDGAVLVEVPVHWSLDDAPAFAFN 192          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: UPI00174D9FBB (polysaccharide deacetylase n=1 Tax=Neobacillus kokaensis TaxID=2759023 RepID=UPI00174D9FBB)

HSP 1 Score: 145 bits (366), Expect = 2.580e-40
Identity = 71/157 (45.22%), Postives = 101/157 (64.33%), Query Frame = 1
Query:   10 PVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQFH 480
            PVA S G +   VG P IL L++ + +++TFF PGWI EQY   ++ + + GHEIG HGYLHE P +L EE+ERE+++ G   +  LTG++P+GYRSP W+FS  T+  L E  FKY+S+ M    P Y   +G    ++ LP  W++ DA +F FH
Sbjct:   30 PVALSHGTYGPRVGLPRILRLLQKYSIEATFFVPGWIIEQYESNIKEIVEAGHEIGHHGYLHEYPDTLTEEKEREILQVGIDRITELTGRKPMGYRSPAWEFSPRTMDYLKEFDFKYSSNMMDDDQP-YIHSNG----IVELPVHWLMDDAPFFLFH 181          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: A0A2E2RHD7_9CHLR (NodB homology domain-containing protein n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A2E2RHD7_9CHLR)

HSP 1 Score: 145 bits (367), Expect = 2.620e-40
Identity = 71/159 (44.65%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    4 DEPVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLN-EEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQF 477
            D P A S G+F    GTP ILEL+    + +TFF PGW+AE+  ++++ +   GHE+  HGYLHEPP SL  +E E +++   S  LE++TG+RP GYRSP W+ SAN+++LLH+ GF Y S  M   +P Y  V  K   ++ LP  W L DA Y+ +
Sbjct:   34 DHPSAISMGEFGPRTGTPRILELLNRHDISATFFIPGWVAERNRELLKNIGGHGHEVAHHGYLHEPPSSLEPDEDEGQILDHASDILESITGERPQGYRSPSWELSANSLQLLHDRGFVYDSSLMGDDIPYY--VGEKDRRIVELPVHWSLDDAPYYTY 190          
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Match: A0A7V1RJA2_9ACTN (Polysaccharide deacetylase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V1RJA2_9ACTN)

HSP 1 Score: 145 bits (367), Expect = 3.370e-40
Identity = 69/152 (45.39%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   22 SAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEAVAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRSPIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWVLADAVYFQF 477
            S G +   VG P +L  ++ + +++TFF PGW+AE +P +V A+A  GHEI  HGYLHE    L+E  ER V+ RG  AL  +TGQ P+GYRSP W+ +A T+RLL E GF+Y+S+ M   LP  +        +I LP  W+L DA +F F
Sbjct:   39 SQGTYGARVGVPLVLHALRRYDIQATFFIPGWVAEHHPDIVAAIADQGHEIAHHGYLHETVTDLDEAAERHVLERGIEALRRVTGQVPIGYRSPAWEVTARTLRLLAEHGFRYSSNLMSHFLPWQHP----DTQLIELPVQWLLDDAPFFLF 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58794.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3AMC7_9CHLR1.530e-4547.80Polysaccharide deacetylase n=2 Tax=Thermorudis Tax... [more]
A0A3A0AYM7_9CHLR1.650e-4346.54Ribulose phosphate epimerase n=1 Tax=Chloroflexi b... [more]
A0A7C5RTW7_THERO1.350e-4246.05Polysaccharide deacetylase n=3 Tax=Bacteria TaxID=... [more]
D1CA38_SPHTD1.640e-4245.28Polysaccharide deacetylase n=1 Tax=Sphaerobacter t... [more]
UPI00196229A11.020e-4145.28polysaccharide deacetylase n=1 Tax=Nakamurella fla... [more]
A0A7C7TRE9_9CHLR3.380e-4145.91Polysaccharide deacetylase n=1 Tax=Dehalococcoidia... [more]
A0A6G1SUC8_9CHLR7.480e-4145.86Polysaccharide deacetylase family protein n=1 Tax=... [more]
UPI00174D9FBB2.580e-4045.22polysaccharide deacetylase n=1 Tax=Neobacillus kok... [more]
A0A2E2RHD7_9CHLR2.620e-4044.65NodB homology domain-containing protein n=3 Tax=Ch... [more]
A0A7V1RJA2_9ACTN3.370e-4045.39Polysaccharide deacetylase n=1 Tax=Actinomycetia b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58794contigP-wetherbeei_contig58794:9..494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1382356.JQMP01000001_gene1056
PFAMsPolysacc_deac_1
Model size486
Max annot lvl189775|Thermomicrobia
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.19e-46
EggNOG OGsCOG0726@1|root,COG0726@2|Bacteria,2GB8A@200795|Chloroflexi,27XZW@189775|Thermomicrobia
Descriptionpolysaccharide deacetylase
Cds size486
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.77344-CDS-P-wetherbeei_contig58794:8..4941683186869.77344-CDS-P-wetherbeei_contig58794:8..494Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58794 9..494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58794.1.1prot_P-wetherbeei_contig58794.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58794 9..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58794.1.1

>prot_P-wetherbeei_contig58794.1.1 ID=prot_P-wetherbeei_contig58794.1.1|Name=mRNA_P-wetherbeei_contig58794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
LDEPVARSAGQFEVNVGTPCILELMKWFGLKSTFFTPGWIAEQYPKMVEA
VAKDGHEIGLHGYLHEPPPSLNEEQEREVIRRGSAALEALTGQRPVGYRS
PIWQFSANTVRLLHEAGFKYTSDFMHTMLPTYNEVSGKSIDMINLPGSWV
LADAVYFQFHIT
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mRNA from alignment at P-wetherbeei_contig58794:9..494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58794.1.1 ID=mRNA_P-wetherbeei_contig58794.1.1|Name=mRNA_P-wetherbeei_contig58794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig58794:9..494- (Phaeothamnion wetherbeei SAG_119_79)
CTGGATGAGCCGGTGGCCCGGTCTGCCGGCCAGTTCGAGGTCAATGTGGG CACGCCGTGCATCCTCGAATTGATGAAGTGGTTTGGGCTGAAATCGACGT TTTTCACGCCAGGCTGGATCGCCGAGCAGTATCCGAAGATGGTCGAGGCT GTGGCCAAGGACGGCCACGAGATCGGGCTGCACGGTTACTTGCATGAGCC GCCGCCGAGCCTGAACGAAGAGCAGGAGCGGGAAGTCATCCGCCGCGGTT CGGCCGCGCTTGAGGCGCTCACCGGCCAGCGACCGGTCGGCTATCGCTCG CCGATCTGGCAATTCAGCGCCAACACGGTTCGCCTGCTGCACGAGGCGGG CTTCAAGTACACCAGCGACTTCATGCACACGATGCTGCCGACCTACAACG AGGTGTCGGGCAAGAGCATCGACATGATCAATCTGCCGGGCAGTTGGGTG CTCGCTGACGCGGTCTATTTCCAGTTCCACATCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58794:9..494-

>mRNA_P-wetherbeei_contig58794.1.1 ID=mRNA_P-wetherbeei_contig58794.1.1|Name=mRNA_P-wetherbeei_contig58794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig58794:9..494- (Phaeothamnion wetherbeei SAG_119_79)
CTGGATGAGCCGGTGGCCCGGTCTGCCGGCCAGTTCGAGGTCAATGTGGG
CACGCCGTGCATCCTCGAATTGATGAAGTGGTTTGGGCTGAAATCGACGT
TTTTCACGCCAGGCTGGATCGCCGAGCAGTATCCGAAGATGGTCGAGGCT
GTGGCCAAGGACGGCCACGAGATCGGGCTGCACGGTTACTTGCATGAGCC
GCCGCCGAGCCTGAACGAAGAGCAGGAGCGGGAAGTCATCCGCCGCGGTT
CGGCCGCGCTTGAGGCGCTCACCGGCCAGCGACCGGTCGGCTATCGCTCG
CCGATCTGGCAATTCAGCGCCAACACGGTTCGCCTGCTGCACGAGGCGGG
CTTCAAGTACACCAGCGACTTCATGCACACGATGCTGCCGACCTACAACG
AGGTGTCGGGCAAGAGCATCGACATGATCAATCTGCCGGGCAGTTGGGTG
CTCGCTGACGCGGTCTATTTCCAGTTCCACATCACC
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