mRNA_P-wetherbeei_contig5868.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5868.1.1
Unique NamemRNA_P-wetherbeei_contig5868.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5868.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5868contigP-wetherbeei_contig5868:2..2800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2799
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003830.1
Cds size2481
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186868.2126443-CDS-P-wetherbeei_contig5868:1..24821683186868.2126443-CDS-P-wetherbeei_contig5868:1..2482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5868 2..2482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186868.2234135-UTR-P-wetherbeei_contig5868:2482..28001683186868.2234135-UTR-P-wetherbeei_contig5868:2482..2800Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5868 2483..2800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5868.1.1prot_P-wetherbeei_contig5868.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5868 2..2482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5868.1.1

>prot_P-wetherbeei_contig5868.1.1 ID=prot_P-wetherbeei_contig5868.1.1|Name=mRNA_P-wetherbeei_contig5868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=827bp
MSSKPRKPTALVYRDGCGTDSVSSMALCIAFGLPAGPEEVSSLLGALFDL
PPSLRAAGLVVVAQTAGSGQEQEQEAVLPLAAACCFAGAVLDPSHPYRIV
IVGRNVALWDVTALTPPPPPGTGGRVDSTAFTSAPDSTLLDGDATARYRA
AHAAAAGGAAAAVAAAAARVAAEKGRGAASTTYLASALEVIALAMAGGSG
NGDSSGETIPGSNSGGGGIAVLEAQHHLITAAEALLAMARIGRAGYFWLL
DAVIRLNGALLGAYSELAEAPTWEVLRFAAATANAATSTTIAVSPAAGLT
TAARPVGRRTGLRRQRTTAGTPVVAVAGATAAIAAAAGPARLPSRSRTMA
TVSVADESSAAVAEEWEFFGTLAAGSGIGSAHADIMRQCFSAWAGHGRLN
EATRRLSIRAQSPKGDDGTSLCDGGGVAVTAAAAIAEPFSSPPARRRAGG
GSRGGAGSGGRHFFGGYRRRVALLRHVTYDESESADGGATTMDDPDDVAA
TATASASEGDAGPGCIARYNRGDDRGSGGRNAGRNRGYRAVFQNGSNGGN
GGQGGDRGGCGNRALITGGGSGGGGDGDGDDNEDSGQDGDGDHNGGQGGG
QGGGQGGGGGDDGAMAAFGEQLVRVVAHCMLLLRRRGEISEAGGAALAAA
AEVGAPEIVTALTSYATHRDVSELLAALAAFANGNAADEDSDGGGNDCCS
ENSDDRDGASTGGDLSTRASEALPVRRPRVAPAASFLAAAAAAPAYGNDR
GGGGGGGDGDGGGGGRGGIASGGKARADALVAARFASIRDAAAARSDQSA
VQWRNGRIAEACGGRESEKGHGDGGGL
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mRNA from alignment at P-wetherbeei_contig5868:2..2800-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5868.1.1 ID=mRNA_P-wetherbeei_contig5868.1.1|Name=mRNA_P-wetherbeei_contig5868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2799bp|location=Sequence derived from alignment at P-wetherbeei_contig5868:2..2800- (Phaeothamnion wetherbeei SAG_119_79)
TTTCAACTTGTAACATTTCGTGATAAAGATTTTGGAAGTGATGGCTGGAA
TCTCAAATGCGCTGCCCATCCAAATCTGTGTCGATTTTTGTGGTTTGAAG
AAAGATACTTCTGCTAGATTGCGAAAGTTTGGAACGATAGGCTAAGAGCC
AGCTGCCAACAAGCCTTTTCGAGCCTGGTAGGACAACCGCGTCCCTTTAA
TTCCATTATTGGTGGTTACGTGCCATGGAAGACACGCTTACCAAACCTTT
TCTCCCATCTTCCTTCACTCTCCTCCCCCATCTTCAGCTTACTACGGCAA
CCGAAAATTCAAGAACGGATGTCGTCGAAGCCACGAAAACCGACGGCACT
GGTATATCGGGACGGATGTGGCACCGATTCCGTGTCGTCGATGGCGCTGT
GCATCGCATTCGGCCTGCCGGCGGGGCCGGAAGAAGTATCTTCCCTCCTC
GGTGCGCTCTTCGATTTGCCACCATCCCTTCGCGCCGCCGGTCTCGTCGT
CGTCGCCCAGACCGCCGGTTCCGGGCAGGAGCAGGAGCAAGAGGCAGTGC
TTCCTCTGGCCGCGGCTTGCTGCTTCGCGGGAGCCGTCTTGGATCCTTCG
CATCCGTATCGGATAGTAATCGTCGGCCGCAACGTCGCCCTCTGGGACGT
CACGGCGCTGACTCCGCCACCCCCGCCGGGCACGGGTGGCCGGGTTGACT
CTACCGCGTTCACGTCAGCACCAGATTCAACCTTGCTGGATGGGGATGCA
ACGGCGCGGTACAGGGCAGCGCATGCTGCAGCGGCGGGAGGAGCGGCGGC
GGCCGTGGCGGCCGCCGCTGCTCGCGTGGCCGCCGAAAAGGGCCGTGGCG
CTGCCAGCACGACGTACCTCGCATCTGCCCTCGAGGTCATCGCATTGGCC
ATGGCTGGCGGAAGCGGAAACGGCGACAGCAGCGGCGAAACTATTCCTGG
CAGCAATTCCGGTGGCGGCGGCATAGCAGTTCTGGAAGCGCAGCACCATT
TGATCACGGCGGCAGAGGCACTGCTGGCGATGGCACGCATCGGCCGCGCA
GGTTACTTTTGGCTGCTCGACGCCGTCATCCGCCTCAACGGCGCCCTGCT
CGGCGCCTACTCCGAGCTGGCCGAGGCGCCGACATGGGAAGTCCTGCGGT
TTGCCGCCGCTACTGCCAACGCGGCAACGTCGACAACCATTGCGGTTTCA
CCCGCGGCGGGCCTCACGACTGCTGCTCGGCCGGTTGGCCGCAGGACGGG
CTTGCGTCGGCAGCGCACTACGGCTGGTACGCCGGTAGTGGCGGTGGCGG
GGGCGACGGCGGCCATCGCAGCTGCTGCTGGACCGGCGCGTTTGCCGTCC
CGGAGTCGGACAATGGCAACGGTGTCGGTGGCGGACGAATCGTCTGCAGC
CGTCGCAGAGGAATGGGAATTCTTTGGAACACTTGCGGCCGGAAGCGGCA
TCGGCAGCGCTCATGCCGACATCATGAGGCAGTGTTTCAGCGCTTGGGCG
GGCCATGGCCGCCTCAACGAAGCGACAAGACGGCTCTCGATTCGAGCACA
AAGCCCCAAGGGTGACGATGGCACCAGCCTGTGTGATGGTGGCGGCGTGG
CGGTGACGGCAGCAGCAGCAATAGCGGAACCGTTTAGCTCACCACCGGCG
CGTAGAAGAGCCGGTGGTGGCAGTAGAGGTGGCGCCGGCTCCGGCGGCCG
CCACTTTTTCGGCGGGTACCGCCGCCGCGTGGCCCTCCTCCGCCACGTCA
CGTACGACGAGAGCGAGAGCGCCGACGGAGGAGCCACCACGATGGATGAT
CCTGATGACGTCGCCGCCACGGCCACCGCCTCCGCGTCCGAAGGCGATGC
GGGCCCAGGGTGCATTGCGAGATACAATCGCGGCGATGATCGCGGCAGCG
GAGGAAGAAACGCTGGCCGCAACCGCGGGTACCGTGCCGTTTTTCAAAAC
GGGAGCAACGGCGGCAATGGCGGCCAAGGCGGCGACAGAGGCGGCTGCGG
AAACCGAGCTCTCATCACCGGCGGCGGCAGCGGCGGCGGCGGCGACGGCG
ACGGCGACGACAACGAAGACAGCGGCCAAGATGGCGACGGCGACCACAAC
GGCGGCCAAGGCGGCGGCCAAGGCGGCGGCCAAGGCGGCGGCGGCGGTGA
CGACGGCGCCATGGCGGCTTTCGGGGAGCAGCTGGTGCGCGTGGTGGCAC
ACTGCATGCTCCTGCTGCGGCGGCGCGGCGAAATCAGCGAGGCTGGCGGC
GCGGCGCTGGCGGCTGCGGCGGAGGTTGGGGCGCCCGAAATTGTCACCGC
ATTGACAAGTTACGCCACGCATCGGGATGTGTCTGAGCTGCTCGCGGCGC
TGGCCGCCTTTGCCAATGGCAATGCCGCCGACGAAGACAGCGACGGCGGT
GGCAACGACTGCTGCAGCGAGAACAGCGACGACAGGGACGGCGCCAGCAC
CGGTGGTGACCTTTCAACCCGAGCGTCCGAAGCGTTGCCAGTAAGGCGGC
CACGGGTTGCTCCCGCTGCTTCCTTTCTTGCAGCGGCGGCGGCCGCGCCT
GCCTACGGAAACGACCGCGGCGGCGGTGGCGGCGGCGGTGACGGCGACGG
CGGCGGCGGCGGCAGAGGCGGAATCGCGAGCGGCGGCAAGGCCCGTGCCG
ACGCGCTCGTGGCGGCGCGTTTCGCCAGCATCCGCGACGCGGCGGCCGCA
CGGTCGGACCAGAGCGCAGTCCAATGGCGGAACGGCAGGATCGCAGAAGC
GTGCGGCGGCAGGGAAAGCGAGAAGGGGCATGGTGACGGAGGGGGGTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5868:2..2800-

>mRNA_P-wetherbeei_contig5868.1.1 ID=mRNA_P-wetherbeei_contig5868.1.1|Name=mRNA_P-wetherbeei_contig5868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2481bp|location=Sequence derived from alignment at P-wetherbeei_contig5868:2..2800- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCGAAGCCACGAAAACCGACGGCACTGGTATATCGGGACGGATG
TGGCACCGATTCCGTGTCGTCGATGGCGCTGTGCATCGCATTCGGCCTGC
CGGCGGGGCCGGAAGAAGTATCTTCCCTCCTCGGTGCGCTCTTCGATTTG
CCACCATCCCTTCGCGCCGCCGGTCTCGTCGTCGTCGCCCAGACCGCCGG
TTCCGGGCAGGAGCAGGAGCAAGAGGCAGTGCTTCCTCTGGCCGCGGCTT
GCTGCTTCGCGGGAGCCGTCTTGGATCCTTCGCATCCGTATCGGATAGTA
ATCGTCGGCCGCAACGTCGCCCTCTGGGACGTCACGGCGCTGACTCCGCC
ACCCCCGCCGGGCACGGGTGGCCGGGTTGACTCTACCGCGTTCACGTCAG
CACCAGATTCAACCTTGCTGGATGGGGATGCAACGGCGCGGTACAGGGCA
GCGCATGCTGCAGCGGCGGGAGGAGCGGCGGCGGCCGTGGCGGCCGCCGC
TGCTCGCGTGGCCGCCGAAAAGGGCCGTGGCGCTGCCAGCACGACGTACC
TCGCATCTGCCCTCGAGGTCATCGCATTGGCCATGGCTGGCGGAAGCGGA
AACGGCGACAGCAGCGGCGAAACTATTCCTGGCAGCAATTCCGGTGGCGG
CGGCATAGCAGTTCTGGAAGCGCAGCACCATTTGATCACGGCGGCAGAGG
CACTGCTGGCGATGGCACGCATCGGCCGCGCAGGTTACTTTTGGCTGCTC
GACGCCGTCATCCGCCTCAACGGCGCCCTGCTCGGCGCCTACTCCGAGCT
GGCCGAGGCGCCGACATGGGAAGTCCTGCGGTTTGCCGCCGCTACTGCCA
ACGCGGCAACGTCGACAACCATTGCGGTTTCACCCGCGGCGGGCCTCACG
ACTGCTGCTCGGCCGGTTGGCCGCAGGACGGGCTTGCGTCGGCAGCGCAC
TACGGCTGGTACGCCGGTAGTGGCGGTGGCGGGGGCGACGGCGGCCATCG
CAGCTGCTGCTGGACCGGCGCGTTTGCCGTCCCGGAGTCGGACAATGGCA
ACGGTGTCGGTGGCGGACGAATCGTCTGCAGCCGTCGCAGAGGAATGGGA
ATTCTTTGGAACACTTGCGGCCGGAAGCGGCATCGGCAGCGCTCATGCCG
ACATCATGAGGCAGTGTTTCAGCGCTTGGGCGGGCCATGGCCGCCTCAAC
GAAGCGACAAGACGGCTCTCGATTCGAGCACAAAGCCCCAAGGGTGACGA
TGGCACCAGCCTGTGTGATGGTGGCGGCGTGGCGGTGACGGCAGCAGCAG
CAATAGCGGAACCGTTTAGCTCACCACCGGCGCGTAGAAGAGCCGGTGGT
GGCAGTAGAGGTGGCGCCGGCTCCGGCGGCCGCCACTTTTTCGGCGGGTA
CCGCCGCCGCGTGGCCCTCCTCCGCCACGTCACGTACGACGAGAGCGAGA
GCGCCGACGGAGGAGCCACCACGATGGATGATCCTGATGACGTCGCCGCC
ACGGCCACCGCCTCCGCGTCCGAAGGCGATGCGGGCCCAGGGTGCATTGC
GAGATACAATCGCGGCGATGATCGCGGCAGCGGAGGAAGAAACGCTGGCC
GCAACCGCGGGTACCGTGCCGTTTTTCAAAACGGGAGCAACGGCGGCAAT
GGCGGCCAAGGCGGCGACAGAGGCGGCTGCGGAAACCGAGCTCTCATCAC
CGGCGGCGGCAGCGGCGGCGGCGGCGACGGCGACGGCGACGACAACGAAG
ACAGCGGCCAAGATGGCGACGGCGACCACAACGGCGGCCAAGGCGGCGGC
CAAGGCGGCGGCCAAGGCGGCGGCGGCGGTGACGACGGCGCCATGGCGGC
TTTCGGGGAGCAGCTGGTGCGCGTGGTGGCACACTGCATGCTCCTGCTGC
GGCGGCGCGGCGAAATCAGCGAGGCTGGCGGCGCGGCGCTGGCGGCTGCG
GCGGAGGTTGGGGCGCCCGAAATTGTCACCGCATTGACAAGTTACGCCAC
GCATCGGGATGTGTCTGAGCTGCTCGCGGCGCTGGCCGCCTTTGCCAATG
GCAATGCCGCCGACGAAGACAGCGACGGCGGTGGCAACGACTGCTGCAGC
GAGAACAGCGACGACAGGGACGGCGCCAGCACCGGTGGTGACCTTTCAAC
CCGAGCGTCCGAAGCGTTGCCAGTAAGGCGGCCACGGGTTGCTCCCGCTG
CTTCCTTTCTTGCAGCGGCGGCGGCCGCGCCTGCCTACGGAAACGACCGC
GGCGGCGGTGGCGGCGGCGGTGACGGCGACGGCGGCGGCGGCGGCAGAGG
CGGAATCGCGAGCGGCGGCAAGGCCCGTGCCGACGCGCTCGTGGCGGCGC
GTTTCGCCAGCATCCGCGACGCGGCGGCCGCACGGTCGGACCAGAGCGCA
GTCCAATGGCGGAACGGCAGGATCGCAGAAGCGTGCGGCGGCAGGGAAAG
CGAGAAGGGGCATGGTGACGGAGGGGGGTTG
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