mRNA_P-wetherbeei_contig5867.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5867.4.1
Unique NamemRNA_P-wetherbeei_contig5867.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5867.4.1 vs. uniprot
Match: A0A3C1L2M3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L2M3_9ACTN)

HSP 1 Score: 189 bits (479), Expect = 2.530e-58
Identity = 108/131 (82.44%), Postives = 110/131 (83.97%), Query Frame = 1 
Query:    1 KEATMKPRTRTLGAIGAAVVTTGLVLGLAFAGNSAASGTDRTTPTTVSMPMSQMPEMGSMMTGDSTWMATMMGSTDMSAMHSMMHQKMKGTVDDEVLAQCDQAHAAMAGSMTTAPTQGQSNHEAHHGGTGS 393
            KEATMKPRTRTLGA+GAAVVTTGLVLGLAFAGNSAASGTDRTTPTTVSMPMSQMP MGSMMTGDST M                   MKGTVDD+VLAQCDQAHAAMAGSMTTAPTQGQSNHEAHHGGTGS
Sbjct:    5 KEATMKPRTRTLGALGAAVVTTGLVLGLAFAGNSAASGTDRTTPTTVSMPMSQMPGMGSMMTGDSTGMXXXXXXXXXXXXXXXXXXXMKGTVDDDVLAQCDQAHAAMAGSMTTAPTQGQSNHEAHHGGTGS 135
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BLAST of mRNA_P-wetherbeei_contig5867.4.1 vs. uniprot
Match: A0A7X9Q2W1_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9Q2W1_9ACTN)

HSP 1 Score: 150 bits (378), Expect = 9.130e-44
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 3 
Query:  393 MNHRHHLICVVAAVGLAVWFLVAGNGGAALAGVSLALLICPLVMGAVMWMLMRQPKSASAPPQTEHLTHDEHISAGPR 626
            MNHRHHLICVVAAVGLAVWFLVAGN GAALAGVSLALLICPLVMGAVMWMLMRQPKSASAPPQTEH+ HDEHISAGPR
Sbjct:    1 MNHRHHLICVVAAVGLAVWFLVAGNRGAALAGVSLALLICPLVMGAVMWMLMRQPKSASAPPQTEHVNHDEHISAGPR 78
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BLAST of mRNA_P-wetherbeei_contig5867.4.1 vs. uniprot
Match: A0A7X9Q2K9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9Q2K9_9ACTN)

HSP 1 Score: 132 bits (333), Expect = 5.960e-37
Identity = 69/78 (88.46%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:  160 MPEMGSMMTGDSTWMATMMGSTDMSAMHSMMHQKMKGTVDDEVLAQCDQAHAAMAGSMTTAPTQGQSNHEAHHGGTGS 393
            MP M SMMTGD   MA MMGS DMSAMHSMMHQ MKGTVDD+VLAQCDQAHAAMAGSMTTAPTQGQSNHEAHHGGTGS
Sbjct:    1 MPNMDSMMTGDMDGMAAMMGSADMSAMHSMMHQMMKGTVDDDVLAQCDQAHAAMAGSMTTAPTQGQSNHEAHHGGTGS 78
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5867.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3C1L2M3_9ACTN2.530e-5882.44Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X9Q2W1_9ACTN9.130e-4496.15Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A7X9Q2K9_9ACTN5.960e-3788.46Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5867contigP-wetherbeei_contig5867:2877..3502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size626
Hectar predicted targeting categorysignal peptide
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186868.1599295-UTR-P-wetherbeei_contig5867:2876..28881683186868.1599295-UTR-P-wetherbeei_contig5867:2876..2888Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5867 2877..2888 +
1683186868.1843305-UTR-P-wetherbeei_contig5867:3272..35021683186868.1843305-UTR-P-wetherbeei_contig5867:3272..3502Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5867 3273..3502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186868.1751018-CDS-P-wetherbeei_contig5867:2888..32721683186868.1751018-CDS-P-wetherbeei_contig5867:2888..3272Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5867 2889..3272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5867.4.1prot_P-wetherbeei_contig5867.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5867 2889..3272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5867.4.1

>prot_P-wetherbeei_contig5867.4.1 ID=prot_P-wetherbeei_contig5867.4.1|Name=mRNA_P-wetherbeei_contig5867.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MKPRTRTLGAIGAAVVTTGLVLGLAFAGNSAASGTDRTTPTTVSMPMSQM
PEMGSMMTGDSTWMATMMGSTDMSAMHSMMHQKMKGTVDDEVLAQCDQAH
AAMAGSMTTAPTQGQSNHEAHHGGTGS*
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mRNA from alignment at P-wetherbeei_contig5867:2877..3502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5867.4.1 ID=mRNA_P-wetherbeei_contig5867.4.1|Name=mRNA_P-wetherbeei_contig5867.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=626bp|location=Sequence derived from alignment at P-wetherbeei_contig5867:2877..3502+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGAGGCAACCATGAAGCCACGAACTCGAACACTCGGTGCCATCGGCGC
TGCAGTGGTCACGACAGGGCTGGTGCTCGGACTGGCGTTTGCGGGTAACT
CCGCCGCCAGCGGCACCGACCGAACCACCCCGACCACGGTCTCGATGCCG
ATGAGTCAGATGCCCGAAATGGGCTCGATGATGACCGGCGACTCGACCTG
GATGGCCACCATGATGGGCTCGACCGACATGTCGGCAATGCACTCGATGA
TGCACCAGAAGATGAAGGGCACCGTCGACGACGAGGTCCTCGCCCAGTGC
GACCAGGCCCATGCCGCGATGGCCGGCTCGATGACGACCGCGCCCACCCA
AGGGCAGTCGAACCATGAGGCGCATCACGGGGGGACAGGGTCATGAACCA
CCGCCACCACCTCATCTGTGTCGTTGCGGCCGTCGGGCTCGCAGTGTGGT
TCCTCGTCGCCGGTAACGGCGGCGCCGCCCTCGCCGGCGTCAGTCTCGCC
CTGTTGATCTGCCCGCTGGTGATGGGTGCCGTGATGTGGATGCTGATGCG
CCAACCCAAGTCGGCATCAGCGCCCCCTCAGACCGAGCACCTCACCCATG
ACGAACACATCTCGGCGGGACCGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5867:2877..3502+

>mRNA_P-wetherbeei_contig5867.4.1 ID=mRNA_P-wetherbeei_contig5867.4.1|Name=mRNA_P-wetherbeei_contig5867.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig5867:2877..3502+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCCACGAACTCGAACACTCGGTGCCATCGGCGCTGCAGTGGTCAC
GACAGGGCTGGTGCTCGGACTGGCGTTTGCGGGTAACTCCGCCGCCAGCG
GCACCGACCGAACCACCCCGACCACGGTCTCGATGCCGATGAGTCAGATG
CCCGAAATGGGCTCGATGATGACCGGCGACTCGACCTGGATGGCCACCAT
GATGGGCTCGACCGACATGTCGGCAATGCACTCGATGATGCACCAGAAGA
TGAAGGGCACCGTCGACGACGAGGTCCTCGCCCAGTGCGACCAGGCCCAT
GCCGCGATGGCCGGCTCGATGACGACCGCGCCCACCCAAGGGCAGTCGAA
CCATGAGGCGCATCACGGGGGGACAGGGTCATGA
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