mRNA_P-wetherbeei_contig58663.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58663.1.1
Unique NamemRNA_P-wetherbeei_contig58663.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: UPI001FE2ABBE (NlpC/P60 family protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001FE2ABBE)

HSP 1 Score: 143 bits (361), Expect = 1.260e-39
Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    4 SGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHGLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTYSGYVGAVRP 270
            +GFDCSGLA+Y +A+ GKSVPHYT AIWNAFP V  ++LQVGDLVF+ GLGHMGIY+GG Q+V+AP TGDVVKVS  S+ S YVGAVRP
Sbjct:  286 TGFDCSGLASYAYAQIGKSVPHYTVAIWNAFPRVPADQLQVGDLVFYRGLGHMGIYIGGGQYVNAPQTGDVVKVSSMSSRSDYVGAVRP 374          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: UPI001C3D7B36 (NlpC/P60 family protein n=2 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D7B36)

HSP 1 Score: 140 bits (352), Expect = 4.560e-38
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    1 PSGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHG-LGHMGIYLGGDQFVHAPHTGDVVKVSQFSTYSGYVGAVRP 270
            PSGFDCSGLA+Y +A+ GKSVPHYTGAIW AFP V +++LQVGDLVF+   LGHMGIY+GG Q+VHAP TGDVVKVS  S  S Y GAVRP
Sbjct:  312 PSGFDCSGLASYAYAQIGKSVPHYTGAIWAAFPKVPSSDLQVGDLVFYRADLGHMGIYIGGGQYVHAPQTGDVVKVSSMSGRSDYQGAVRP 402          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: UPI001C3E38F3 (C40 family peptidase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E38F3)

HSP 1 Score: 139 bits (350), Expect = 1.130e-37
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    4 SGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHGLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTYSGYVGAVRP 270
            SGFDCSGLA++ +A+ GKSVPHYT AI+NAFP V + +LQ GDLVF+ GLGHMGIY+GG Q+VHAP TGDVVKVS  S+ S YVGAVRP
Sbjct:  327 SGFDCSGLASWAYAQIGKSVPHYTVAIYNAFPKVPSGQLQAGDLVFWRGLGHMGIYIGGGQYVHAPQTGDVVKVSSMSSRSDYVGAVRP 415          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: A0A7W1K018_9ACTN (C40 family peptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1K018_9ACTN)

HSP 1 Score: 129 bits (324), Expect = 1.050e-34
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 PSGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHGLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTY--SGYVGAVR 267
            PSGFDCSGL  YVFAK G S+PH T ++WN    VS ++LQ GDL+FF GLGHMGIY+GG QF+HAPHTGDVVK+S  S Y  S Y+GA R
Sbjct:  219 PSGFDCSGLVVYVFAKIGVSLPHSTYSLWNVGSPVSRDQLQAGDLIFFSGLGHMGIYIGGGQFIHAPHTGDVVKISSLSGYYSSAYMGARR 309          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: A0A7W0QLF4_9ACTN (C40 family peptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0QLF4_9ACTN)

HSP 1 Score: 127 bits (318), Expect = 4.680e-33
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    7 GFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHGLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTYSGYVGAVR 267
            GFDCSGL +Y FA+ G S+PH+    +     VS+++LQ  DLVFFHGLGHMG+Y+GGDQF+HAPHTGDVVK+S FS+YSG+VGA R
Sbjct:  318 GFDCSGLTSYAFAQIGVSLPHHAATQFGYGTPVSSDDLQPADLVFFHGLGHMGMYIGGDQFIHAPHTGDVVKISTFSSYSGFVGARR 404          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: UPI00199C2A7B (C40 family peptidase n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=UPI00199C2A7B)

HSP 1 Score: 120 bits (301), Expect = 7.600e-33
Identity = 57/89 (64.04%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 PSGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHGLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTYSGYVGAVR 267
            PSGFDCSGL  Y +A+ G S+P  T A WNA  HVS +ELQVGDLVFF+GLGHMG+Y+G  Q++H+PHTGDVVK+S     SG  GAVR
Sbjct:   76 PSGFDCSGLVMYSYAQVGVSLPRTTYAQWNAGRHVSASELQVGDLVFFYGLGHMGLYIGNGQYIHSPHTGDVVKISPLP--SGMDGAVR 162          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: A0A538JHV7_9ACTN (NlpC/P60 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JHV7_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 1.480e-32
Identity = 58/92 (63.04%), Postives = 71/92 (77.17%), Query Frame = 1
Query:    1 PSGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHGLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTY---SGYVGAVR 267
            PSGFDCSGL  YV+ + G S+PHYTGA W+    VS+++LQ GDLVFF+GLGH+GIY+GG QF+HAPHTGDVVK+S  S     S Y+GA R
Sbjct:  241 PSGFDCSGLVAYVYGQMGVSLPHYTGAQWSVGVPVSSSDLQPGDLVFFNGLGHVGIYIGGGQFIHAPHTGDVVKISSLSESWYASTYMGARR 332          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: A0A538IJK7_9ACTN (NlpC/P60 family protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538IJK7_9ACTN)

HSP 1 Score: 119 bits (297), Expect = 1.680e-32
Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 PSGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHGLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTYSGYVGAVR 267
            PSGFDCSGL  YV+A+ G S+PHYT A W++   +S++E+Q GDLVFF+GLGH+GIY+GG QFV APHTG VV++    ++ G+ GA R
Sbjct:   52 PSGFDCSGLVMYVYAQLGISLPHYTVAQWSSTIPISSSEMQPGDLVFFNGLGHVGIYIGGGQFVDAPHTGSVVRIDSLGSFGGFDGARR 140          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: UPI001C3DB8DB (C40 family peptidase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3DB8DB)

HSP 1 Score: 124 bits (311), Expect = 1.960e-32
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    7 GFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFH-GLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTYSGYVGAVRP 270
            GFDCSGLA++ + + GKSVPH+TGAIW+AFP V + +L  GDLVFF   LGHMGIY+GG Q+V+AP TGDVVKVS  +  S Y GAVRP
Sbjct:  262 GFDCSGLASWAYGQIGKSVPHFTGAIWSAFPRVPSGQLAPGDLVFFRPDLGHMGIYIGGGQYVNAPQTGDVVKVSSLAGRSDYQGAVRP 350          
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Match: A0A7V9CUN7_9ACTN (C40 family peptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9CUN7_9ACTN)

HSP 1 Score: 121 bits (303), Expect = 4.780e-31
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    1 PSGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHGLGHMGIYLGGDQFVHAPHTGDVVKVSQFSTY---SGYVGAVR 267
            P GFDCSGL  + F + G S+PHYTG++W     VS++ LQ GDLVFF+GLGHMGIY+GG QFVHAPHTGDVVK+S  S     S Y GA R
Sbjct:  286 PGGFDCSGLVVFAFGQLGISLPHYTGSLWQMGVPVSSDNLQAGDLVFFNGLGHMGIYMGGGQFVHAPHTGDVVKISSLSDSWYASTYEGARR 377          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58663.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FE2ABBE1.260e-3973.03NlpC/P60 family protein n=1 Tax=Miltoncostaea ocea... [more]
UPI001C3D7B364.560e-3872.53NlpC/P60 family protein n=2 Tax=Miltoncostaea ocea... [more]
UPI001C3E38F31.130e-3771.91C40 family peptidase n=1 Tax=Miltoncostaea marina ... [more]
A0A7W1K018_9ACTN1.050e-3465.93C40 family peptidase n=1 Tax=Actinomycetia bacteri... [more]
A0A7W0QLF4_9ACTN4.680e-3364.37C40 family peptidase n=1 Tax=Actinomycetia bacteri... [more]
UPI00199C2A7B7.600e-3364.04C40 family peptidase n=1 Tax=Thermoleophilia bacte... [more]
A0A538JHV7_9ACTN1.480e-3263.04NlpC/P60 domain-containing protein n=1 Tax=Actinom... [more]
A0A538IJK7_9ACTN1.680e-3258.43NlpC/P60 family protein (Fragment) n=1 Tax=Actinom... [more]
UPI001C3DB8DB1.960e-3265.17C40 family peptidase n=1 Tax=Miltoncostaea marina ... [more]
A0A7V9CUN7_9ACTN4.780e-3161.96C40 family peptidase n=1 Tax=Actinomycetia bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58663contigP-wetherbeei_contig58663:230..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1262449.CP6013_3053
PFAMsNLPC_P60
Model size273
Max annot lvl186801|Clostridia
KEGG koko:K21471
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.58e-25
EggNOG OGsCOG0791@1|root,COG3883@1|root,COG0791@2|Bacteria,COG3883@2|Bacteria,1TRU2@1239|Firmicutes,24K7H@186801|Clostridia
DescriptionNlpC/P60 family
Cds size273
COG categoryM
BRITEko00000,ko01000,ko01002,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.9684277-CDS-P-wetherbeei_contig58663:229..5021683186867.9684277-CDS-P-wetherbeei_contig58663:229..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58663 230..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58663.1.1prot_P-wetherbeei_contig58663.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58663 230..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58663.1.1

>prot_P-wetherbeei_contig58663.1.1 ID=prot_P-wetherbeei_contig58663.1.1|Name=mRNA_P-wetherbeei_contig58663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
PSGFDCSGLATYVFAKYGKSVPHYTGAIWNAFPHVSTNELQVGDLVFFHG
LGHMGIYLGGDQFVHAPHTGDVVKVSQFSTYSGYVGAVRP*
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mRNA from alignment at P-wetherbeei_contig58663:230..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58663.1.1 ID=mRNA_P-wetherbeei_contig58663.1.1|Name=mRNA_P-wetherbeei_contig58663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig58663:230..502- (Phaeothamnion wetherbeei SAG_119_79)
CCTTCCGGGTTCGACTGCAGCGGCCTCGCCACCTACGTCTTCGCCAAGTA CGGCAAGAGCGTGCCTCACTACACCGGCGCCATCTGGAACGCGTTCCCCC ACGTGTCCACAAATGAGCTCCAGGTCGGCGACCTCGTCTTCTTCCACGGC CTCGGCCACATGGGCATCTATCTCGGCGGCGACCAGTTCGTCCACGCCCC CCACACCGGTGACGTGGTCAAGGTGAGCCAGTTCTCCACCTACTCCGGCT ACGTGGGAGCCGTCCGCCCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58663:230..502-

>mRNA_P-wetherbeei_contig58663.1.1 ID=mRNA_P-wetherbeei_contig58663.1.1|Name=mRNA_P-wetherbeei_contig58663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig58663:230..502- (Phaeothamnion wetherbeei SAG_119_79)
CCTTCCGGGTTCGACTGCAGCGGCCTCGCCACCTACGTCTTCGCCAAGTA
CGGCAAGAGCGTGCCTCACTACACCGGCGCCATCTGGAACGCGTTCCCCC
ACGTGTCCACAAATGAGCTCCAGGTCGGCGACCTCGTCTTCTTCCACGGC
CTCGGCCACATGGGCATCTATCTCGGCGGCGACCAGTTCGTCCACGCCCC
CCACACCGGTGACGTGGTCAAGGTGAGCCAGTTCTCCACCTACTCCGGCT
ACGTGGGAGCCGTCCGCCCGTAG
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