prot_P-wetherbeei_contig586.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig586.3.1
Unique Name	prot_P-wetherbeei_contig586.3.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	200

Homology

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: A0A3M6U4E5_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U4E5_POCDA)

HSP 1 Score: 119 bits (299), Expect = 1.030e-27
Identity = 76/183 (41.53%), Postives = 99/183 (54.10%), Query Frame = 0

Query:   23 RPAFEPKGHGPEEPFELGAGG-----QIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADV-----DRIEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRGKKDLEATLDRARRGKVEIVLMSYPMLQ 195
            RP+F     GP  PF L   G     QIP  IN +L  +QR+GVSFL++ Y++ TG   AIL DDMGLGKTVQVI+F+SA+  KTGT  D+     DR+         PE                 LVV P SV+ +W   LE WG F      G    E+TLDRA RG++++VL +Y  ++
Sbjct:  221 RPSFTEPALGPSVPFILSKPGVVPVIQIPATINSYLRQYQRDGVSFLFQHYSENTG---AILGDDMGLGKTVQVISFISAILGKTGTKVDIFRKFMDRMAHEKQEKVNPETGT-------------FLVVSPGSVMFNWRDELETWGHFKTGLFHGTTR-ESTLDRASRGRLDVVLTTYETMR 386

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: A0A8C1F5E1_CYPCA (Excision repair cross-complementation group 6-like 2 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1F5E1_CYPCA)

HSP 1 Score: 117 bits (293), Expect = 4.610e-27
Identity = 72/166 (43.37%), Postives = 95/166 (57.23%), Query Frame = 0

Query:   32 GPEEPFEL-GAGGQIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDRIEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRG-KKDLEATLDRARRGKVEIVLMSYPMLQ 195
            GP EPF L G   ++P  INR+L D+QREG+ F++  YA     +G IL DDMGLGKTVQVI FL+AV +KTGT  DV+  +      + P   V           +  L+V P SVL +W   L+ WG F V  + G +KD E  L R +RG+ EI L +Y  L+
Sbjct:   36 GPSEPFLLSGNDVKVPYTINRYLRDYQREGIQFIYHNYAKS---RGCILGDDMGLGKTVQVIGFLAAVLRKTGTWKDVENNKPQFLLSQKPSEQVQ----------KVFLIVAPLSVLYNWKDELDTWGHFRVVVVHGVRKDEE--LARVQRGRCEIALTTYETLR 186

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: I2G6X8_USTH4 (Related to RAD26-DNA repair and recombination protein n=2 Tax=Ustilago TaxID=5269 RepID=I2G6X8_USTH4)

HSP 1 Score: 117 bits (294), Expect = 4.660e-27
Identity = 73/173 (42.20%), Postives = 101/173 (58.38%), Query Frame = 0

Query:   21 GDRPAFE-PKGHGPEEPFELGAGGQIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDR-IEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRGKKDLEATLDRARRGKVEIVLMSY 191
            G RPAF  P      +P EL  G  +P  INR L  +QR+GV FL+R YA+    +GA+L DDMGLGKT+QVIAFLSA+ +KTG   D DR IE + S  +  +Y          A     L++CP+SV+ +W   L+ WG F  A   G +   A L+  RRG+++I++ S+
Sbjct:  255 GQRPAFPVPAELRDTDPLELAPGFAVPASINRFLRSYQRDGVRFLYRSYAEN---RGALLGDDMGLGKTIQVIAFLSAIMRKTGREEDADRRIEAVRSDRQRADYHR------ANAVWPTCLIICPSSVIDNWRHELDTWGYFEHAAFSGTRAKNA-LESFRRGRLDILVTSH 417

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: A0A8C1TDG0_CYPCA (Excision repair cross-complementation group 6-like 2 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1TDG0_CYPCA)

HSP 1 Score: 117 bits (293), Expect = 5.930e-27
Identity = 72/166 (43.37%), Postives = 95/166 (57.23%), Query Frame = 0

Query:   32 GPEEPFEL-GAGGQIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDRIEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRG-KKDLEATLDRARRGKVEIVLMSYPMLQ 195
            GP EPF L G   ++P  INR+L D+QREG+ F++  YA     +G IL DDMGLGKTVQVI FL+AV +KTGT  DV+  +      + P   V           +  L+V P SVL +W   L+ WG F V  + G +KD E  L R +RG+ EI L +Y  L+
Sbjct:   36 GPSEPFLLSGNDVKVPYTINRYLRDYQREGIQFIYHNYAKS---RGCILGDDMGLGKTVQVIGFLAAVLRKTGTWKDVENNKPQFLLSQKPSEQVQ----------KVFLIVAPLSVLYNWKDELDTWGHFRVVVVHGVRKDEE--LARVQRGRCEIALTTYETLR 186

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: A0A672RND9_SINGR (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672RND9_SINGR)

HSP 1 Score: 117 bits (293), Expect = 6.120e-27
Identity = 71/166 (42.77%), Postives = 96/166 (57.83%), Query Frame = 0

Query:   32 GPEEPFEL-GAGGQIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDRIEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRG-KKDLEATLDRARRGKVEIVLMSYPMLQ 195
            GP EPF L G+  ++P  INR+L D+QREG+ F++  YA     +G IL DDMGLGKTVQVI FL+AV +KTGT  DV+  +      + P   V           +  L+V P S+L +W   L+ WG F V  + G +KD E  L R +RG+ EI L +Y  L+
Sbjct:   77 GPSEPFLLSGSDVKVPYTINRYLRDYQREGIKFIYHNYAKS---RGCILGDDMGLGKTVQVIGFLAAVLRKTGTWKDVENNKPQFLLSQKPSEQVQ----------KVFLIVAPLSLLYNWKDELDTWGHFRVVVVHGVRKDEE--LARVQRGRCEIALTTYETLR 227

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: A0A671LC05_9TELE (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671LC05_9TELE)

HSP 1 Score: 117 bits (292), Expect = 8.400e-27
Identity = 71/166 (42.77%), Postives = 96/166 (57.83%), Query Frame = 0

Query:   32 GPEEPFEL-GAGGQIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDRIEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRG-KKDLEATLDRARRGKVEIVLMSYPMLQ 195
            GP EPF L G+  ++P  INR+L D+QREG+ F++  YA     +G IL DDMGLGKTVQVI FL+AV +KTGT  DV+  +      + P   V           +  L+V P S+L +W   L+ WG F V  + G +KD E  L R +RG+ EI L +Y  L+
Sbjct:   50 GPSEPFLLSGSDVKVPYTINRYLRDYQREGIKFIYHNYAKS---RGCILGDDMGLGKTVQVIGFLAAVLRKTGTWKDVENNKPQFLLSQKPSEQVQ----------KVFLIVAPLSLLYNWKDELDTWGHFRVVVVHGVRKDEE--LVRVQRGRCEIALTTYETLR 200

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: A0A851KS74_VIDCH (ER6L2 protein (Fragment) n=1 Tax=Vidua chalybeata TaxID=81927 RepID=A0A851KS74_VIDCH)

HSP 1 Score: 116 bits (290), Expect = 1.560e-26
Identity = 68/161 (42.24%), Postives = 95/161 (59.01%), Query Frame = 0

Query:   37 FELGAGGQ-IPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDRIEELASAGELPEYAVDAGAGGKGA-PGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRGKKDLEATLDRARRGKVEIVLMSYPMLQ 195
            F+L   G  IP  INR+L D+QREGV FL+R YA+    +G IL DDMGLGKT+QVI+FL+AV  K GT  D++          +PE+ +     G    P +  L+V P SVL +W   L+ WG F V+ L G K  +  + R ++GK E+ L +Y +L+
Sbjct:   97 FKLSDNGNFIPYTINRYLRDYQREGVQFLYRHYANK---RGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIEN--------NMPEFLLRTMKKGSDCNPKKTFLIVAPLSVLYNWKDELDTWGYFKVSVLHGSKK-DDDMSRIKQGKCEVALTTYEILR 245

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: M9LUE3_PSEA3 (Transcription-coupled repair protein CSB/RAD26 n=3 Tax=Moesziomyces TaxID=63261 RepID=M9LUE3_PSEA3)

HSP 1 Score: 116 bits (290), Expect = 1.590e-26
Identity = 76/188 (40.43%), Postives = 107/188 (56.91%), Query Frame = 0

Query:    6 ASSASGATSGAFWASGDRPAFE-PKGHGPEEPFELGAGGQIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDR-IEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRGKKDLEATLDRARRGKVEIVLMSY 191
            AS+  G+ + A +  G +P+F  PK      P  LG G Q+P  INR L  +QR+GV FL+R YA     +GA+L DDMGLGKT+QVIAFLSA+  KTG   D +R IE + S  +   Y          A     L++CP+SV+ +W   L+ WG F  A   G +  E  L+  RRG+++I++ S+
Sbjct:  224 ASATHGSIAPAAFLEGQKPSFPVPKELRDVGPLVLGPGIQVPAAINRFLRSYQRDGVRFLYRSYAQN---RGALLGDDMGLGKTIQVIAFLSAIMLKTGGENDENRRIEAVRSDRQRAGYHC------ANAVWPTCLIICPSSVIDNWRHELDTWGYFEHAAFSGARAKEEALESFRRGRLDILVTSH 402

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BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: A0A8C2KLF5_CYPCA (Excision repair cross-complementation group 6-like 2 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2KLF5_CYPCA)

HSP 1 Score: 115 bits (289), Expect = 2.100e-26
Identity = 71/166 (42.77%), Postives = 94/166 (56.63%), Query Frame = 0

Query:   32 GPEEPFEL-GAGGQIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDRIEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRG-KKDLEATLDRARRGKVEIVLMSYPMLQ 195
            GP EPF L G   ++P  INR+L D+QREG+ F++  YA     +G IL DDMGLGKTVQVI FL+A  +KTGT  DV+  +      + P   V           +  L+V P SVL +W   L+ WG F V  + G +KD E  L R +RG+ EI L +Y  L+
Sbjct:   47 GPSEPFLLSGNDVKVPYTINRYLRDYQREGIQFIYHNYAKS---RGCILGDDMGLGKTVQVIGFLAAALRKTGTWKDVENNKPQFLLSQKPSEQVQ----------KVFLIVAPLSVLYNWKDELDTWGHFRVVVVHGVRKDEE--LARVQRGRCEIALTTYETLR 197

[Close]

BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Match: A0A8C2KIT5_CYPCA (Excision repair cross-complementation group 6-like 2 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2KIT5_CYPCA)

HSP 1 Score: 115 bits (289), Expect = 2.170e-26
Identity = 71/166 (42.77%), Postives = 94/166 (56.63%), Query Frame = 0

Query:   32 GPEEPFEL-GAGGQIPRPINRHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFKKTGTAADVDRIEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLASWLKHLEEWGRFAVAPLRG-KKDLEATLDRARRGKVEIVLMSYPMLQ 195
            GP EPF L G   ++P  INR+L D+QREG+ F++  YA     +G IL DDMGLGKTVQVI FL+A  +KTGT  DV+  +      + P   V           +  L+V P SVL +W   L+ WG F V  + G +KD E  L R +RG+ EI L +Y  L+
Sbjct:   55 GPSEPFLLSGNDVKVPYTINRYLRDYQREGIQFIYHNYAKS---RGCILGDDMGLGKTVQVIGFLAAALRKTGTWKDVENNKPQFLLSQKPSEQVQ----------KVFLIVAPLSVLYNWKDELDTWGHFRVVVVHGVRKDEE--LARVQRGRCEIALTTYETLR 205

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig586.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3M6U4E5_POCDA	1.030e-27	41.53	Uncharacterized protein n=2 Tax=Pocillopora damico...	[more]
A0A8C1F5E1_CYPCA	4.610e-27	43.37	Excision repair cross-complementation group 6-like...	[more]
I2G6X8_USTH4	4.660e-27	42.20	Related to RAD26-DNA repair and recombination prot...	[more]
A0A8C1TDG0_CYPCA	5.930e-27	43.37	Excision repair cross-complementation group 6-like...	[more]
A0A672RND9_SINGR	6.120e-27	42.77	DNA excision repair protein ERCC-6-like 2 n=1 Tax=...	[more]
A0A671LC05_9TELE	8.400e-27	42.77	DNA excision repair protein ERCC-6-like 2 n=1 Tax=...	[more]
A0A851KS74_VIDCH	1.560e-26	42.24	ER6L2 protein (Fragment) n=1 Tax=Vidua chalybeata ...	[more]
M9LUE3_PSEA3	1.590e-26	40.43	Transcription-coupled repair protein CSB/RAD26 n=3...	[more]
A0A8C2KLF5_CYPCA	2.100e-26	42.77	Excision repair cross-complementation group 6-like...	[more]
A0A8C2KIT5_CYPCA	2.170e-26	42.77	Excision repair cross-complementation group 6-like...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 38..198 e-value: 3.9E-25 score: 90.1
IPR000330	SNF2, N-terminal	PFAM	PF00176	SNF2-rel_dom	coord: 71..195 e-value: 1.1E-16 score: 60.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR45629	SNF2/RAD54 FAMILY MEMBER	coord: 31..195
None	No IPR available	PANTHER	PTHR45629:SF7	DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED	coord: 31..195
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 44..195

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig586	contig	P-wetherbeei_contig586:5888..6745 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig586.3.1	mRNA_P-wetherbeei_contig586.3.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig586 5888..6745 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig586.3.1 ID=prot_P-wetherbeei_contig586.3.1|Name=mRNA_P-wetherbeei_contig586.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp
TGGRGASSASGATSGAFWASGDRPAFEPKGHGPEEPFELGAGGQIPRPIN
RHLWDFQREGVSFLWRRYADPTGPKGAILSDDMGLGKTVQVIAFLSAVFK
KTGTAADVDRIEELASAGELPEYAVDAGAGGKGAPGRPVLVVCPASVLAS
WLKHLEEWGRFAVAPLRGKKDLEATLDRARRGKVEIVLMSYPMLQASSV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038718	SNF2-like_sf
IPR000330	SNF2_N
IPR027417	P-loop_NTPase