mRNA_P-wetherbeei_contig5852.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5852.3.1
Unique NamemRNA_P-wetherbeei_contig5852.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A7S2K268_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K268_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.220e-9
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            ISFEV G+WYN GGY+ VPWLELLDL KW
Sbjct:  118 ISFEVFGDWYNSGGYELVPWLELLDLAKW 146
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A7S1VLD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VLD0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.400e-9
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            I+FE  G+WYN GGYQ VPWLELLDL KW
Sbjct:   55 ITFEAFGDWYNSGGYQIVPWLELLDLAKW 83
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            ISFE VG WYN GG++ +PWLELLDL+KW
Sbjct:  202 ISFEDVGNWYNTGGFEVIPWLELLDLRKW 230
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            ISFE VG WYN GG++ +PWLELLDL+KW
Sbjct:  213 ISFEDVGNWYNTGGFEVIPWLELLDLRKW 241
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A1V9ZSX4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSX4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.080e-7
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            ISFE  GEWYNGGGY+ + W+ELLD+ KW
Sbjct: 1241 ISFEQFGEWYNGGGYETLSWVELLDVSKW 1269
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A7S4DHJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHJ8_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 6.140e-7
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            I FE  G WYN GG+Q +PWLELLDL KW
Sbjct:  139 IGFEEFGNWYNNGGFQQIPWLELLDLTKW 167
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A7S3UWA7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA7_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 6.780e-7
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            +SFE  G WYN GG++ VPWLELLDL+KW
Sbjct:  192 VSFEDFGGWYNSGGFEVVPWLELLDLRKW 220
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A067CBJ2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBJ2_SAPPC)

HSP 1 Score: 52.8 bits (125), Expect = 8.320e-7
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            ISFE  GEWYNGGGY+ + W+ELLD+ KW
Sbjct: 1258 ISFEQFGEWYNGGGYETLSWVELLDVAKW 1286
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A7S1G6W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6W4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.330e-7
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            IS+E  G+WYN GG++ +PWLELLDL+KW
Sbjct:  467 ISYEEFGQWYNEGGFEVIPWLELLDLRKW 495
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BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Match: A0A7S2K2V1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2V1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 1 
Query:   43 ISFEVVGEWYNGGGYQAVPWLELLDLQKW 129
            + F   GEWYNGGGY+  PWLELLDL KW
Sbjct:  411 VDFGDFGEWYNGGGYETAPWLELLDLGKW 439
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5852.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2K268_9STRA3.220e-979.31Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1VLD0_9STRA6.400e-975.86Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A6H5JYX4_9PHAE1.740e-772.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUX5_ECTSI1.740e-772.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9ZSX4_9STRA6.080e-768.97Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S4DHJ8_HETAK6.140e-768.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UWA7_HETAK6.780e-768.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A067CBJ2_SAPPC8.320e-768.97Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S1G6W4_9STRA8.330e-765.52Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2K2V1_9STRA1.140e-668.97Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5852contigP-wetherbeei_contig5852:3127..3255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps24544
Model size129
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.11e-08
EggNOG OGs2CU92@1|root,2RK0N@2759|Eukaryota,2XCFZ@2836|Bacillariophyta
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.4285514-CDS-P-wetherbeei_contig5852:3126..32551683186866.4285514-CDS-P-wetherbeei_contig5852:3126..3255Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5852 3127..3255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5852.3.1prot_P-wetherbeei_contig5852.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5852 3127..3255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5852.3.1

>prot_P-wetherbeei_contig5852.3.1 ID=prot_P-wetherbeei_contig5852.3.1|Name=mRNA_P-wetherbeei_contig5852.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
GASSSPASSSSSPPISFEVVGEWYNGGGYQAVPWLELLDLQKW
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mRNA from alignment at P-wetherbeei_contig5852:3127..3255-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5852.3.1 ID=mRNA_P-wetherbeei_contig5852.3.1|Name=mRNA_P-wetherbeei_contig5852.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig5852:3127..3255- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGTCTTCTTCCCCGGCCTCCTCCTCCTCCTCGCCACCGATCAGCTT
CGAGGTGGTGGGCGAGTGGTACAACGGCGGTGGCTACCAGGCGGTGCCGT
GGCTTGAACTCCTCGACCTGCAGAAATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5852:3127..3255-

>mRNA_P-wetherbeei_contig5852.3.1 ID=mRNA_P-wetherbeei_contig5852.3.1|Name=mRNA_P-wetherbeei_contig5852.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig5852:3127..3255- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGTCTTCTTCCCCGGCCTCCTCCTCCTCCTCGCCACCGATCAGCTT
CGAGGTGGTGGGCGAGTGGTACAACGGCGGTGGCTACCAGGCGGTGCCGT
GGCTTGAACTCCTCGACCTGCAGAAATGG
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