mRNA_P-wetherbeei_contig58479.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58479.1.1
Unique NamemRNA_P-wetherbeei_contig58479.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: H0TWX7_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TWX7_9BRAD)

HSP 1 Score: 57.0 bits (136), Expect = 1.960e-9
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    4 MNDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVREL 165
            M+D Y+IEV G AAG+ + +RGG+RF A +  + PL+G+ FR+ R AERA   L
Sbjct:    1 MSDTYIIEVGGQAAGIVVRDRGGYRFFAASHRFNPLEGQLFRNAREAERAAVRL 54
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: UPI001A9714CB (hypothetical protein n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A9714CB)

HSP 1 Score: 52.4 bits (124), Expect = 1.410e-7
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    7 NDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVREL 165
            ++AY IEV G AAG+ +A+RGG+ F      +  LDGR FR V  A+RAVR L
Sbjct:    4 SNAYAIEVQGRAAGIVVAQRGGYTFFVADHAFRELDGRFFRRVEQAQRAVRRL 56
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: UPI001BBAC4CA (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=UPI001BBAC4CA)

HSP 1 Score: 50.1 bits (118), Expect = 1.150e-6
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    4 MNDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVREL 165
            M++AY+IE  G+AAG+ + ERGG+RF A+A  +  ++ + FR    AERA R L
Sbjct:    1 MSEAYLIEAAGEAAGVVVRERGGYRFFASAPQFTAIEQQLFRRTTDAERAARIL 54
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: A0A516GYI3_9PROT (Uncharacterized protein n=1 Tax=Ferrovibrio terrae TaxID=2594003 RepID=A0A516GYI3_9PROT)

HSP 1 Score: 49.3 bits (116), Expect = 2.320e-6
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    4 MNDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVREL 165
            M++AY+IE  G+AAG+ + ERGG+RF A A  +  ++ + FR    AERA R L
Sbjct:    1 MSEAYLIEAAGEAAGVVVRERGGFRFFAAAPQFNAIEQQLFRRTADAERAARAL 54
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: A0A211ZPL4_9PROT (Uncharacterized protein n=2 Tax=Inquilinus limosus TaxID=171674 RepID=A0A211ZPL4_9PROT)

HSP 1 Score: 48.9 bits (115), Expect = 3.600e-6
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    7 NDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVRELRR 171
            ++A+ IEV G+A G+ +A++ G+RF A+ + +  L+G+ FR V  AERA R+L R
Sbjct:    4 SEAFTIEVAGEAIGIVVAQKRGFRFYASDSRFQHLEGQEFRSVPDAERAARDLGR 58
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: A0A0A0D2U1_9PROT (Uncharacterized protein n=2 Tax=Inquilinus limosus TaxID=171674 RepID=A0A0A0D2U1_9PROT)

HSP 1 Score: 48.9 bits (115), Expect = 3.600e-6
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    7 NDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVRELRR 171
            ++A+ IEV G+A G+ +A++ G+RF A+ + +  L+G+ FR V  AERA R+L R
Sbjct:    4 SEAFTIEVAGEAIGIVVAQKRGFRFYASDSRFQHLEGQEFRSVPDAERAARDLGR 58
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: A0A6A7KSF8_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KSF8_9PROT)

HSP 1 Score: 48.5 bits (114), Expect = 5.350e-6
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    4 MNDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVRELRRIKNAA 186
            M+DA+V+E+ G+  GLA+ ERGG+RF A A  Y+ LDG  +    H   A   +R+ K+ A
Sbjct:    1 MSDAFVVEIWGEQVGLAIRERGGFRFFAAAPGYFGLDGNLYPTFGHVRLAA--IRKAKSDA 59
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: A0A554UE75_9MYCO (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A554UE75_9MYCO)

HSP 1 Score: 47.8 bits (112), Expect = 1.030e-5
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    7 NDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVRELRR 171
            ++A+ IEV G+A G+ +A++ G+RF A+ + +  L+G  FR V  AERA R+L R
Sbjct:    4 SEAFTIEVAGEAVGIVVAQKRGFRFYASDSRFQHLEGHDFRTVPDAERAARDLGR 58
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: A0A2M8U4I8_9PROT (Uncharacterized protein n=1 Tax=Ferrovibrio sp. TaxID=1917215 RepID=A0A2M8U4I8_9PROT)

HSP 1 Score: 47.4 bits (111), Expect = 1.490e-5
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    4 MNDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVREL 165
            M++AY+IE  G+AAG+ + ERGG+RF A+A  +  ++ + FR    A RA R L
Sbjct:    1 MSEAYLIEAAGEAAGVVVRERGGYRFFASAPQFNVIEQQLFRRTADAARAARAL 54
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BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Match: A0A0Q9I3W3_9HYPH (Uncharacterized protein n=2 Tax=Bosea sp. Root381 TaxID=1736524 RepID=A0A0Q9I3W3_9HYPH)

HSP 1 Score: 46.2 bits (108), Expect = 4.970e-5
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:    1 PMNDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERAVRE 162
            PM+ A VIEV  +AAG+ +   G +RF ++   +   DGR FR V  A RAV E
Sbjct:   14 PMSQAIVIEVQDEAAGIVVGSSGHFRFFSSQPAFDSFDGRTFRSVEQARRAVAE 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58479.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
H0TWX7_9BRAD1.960e-950.00Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
UPI001A9714CB1.410e-750.94hypothetical protein n=1 Tax=Arenibaculum pallidil... [more]
UPI001BBAC4CA1.150e-646.30Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A516GYI3_9PROT2.320e-646.30Uncharacterized protein n=1 Tax=Ferrovibrio terrae... [more]
A0A211ZPL4_9PROT3.600e-643.64Uncharacterized protein n=2 Tax=Inquilinus limosus... [more]
A0A0A0D2U1_9PROT3.600e-643.64Uncharacterized protein n=2 Tax=Inquilinus limosus... [more]
A0A6A7KSF8_9PROT5.350e-642.62Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A554UE75_9MYCO1.030e-543.64Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A2M8U4I8_9PROT1.490e-544.44Uncharacterized protein n=1 Tax=Ferrovibrio sp. Ta... [more]
A0A0Q9I3W3_9HYPH4.970e-544.44Uncharacterized protein n=2 Tax=Bosea sp. Root381 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58479contigP-wetherbeei_contig58479:184..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog504832.OCAR_7025
Preferred nameMA20_44835
Model size189
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.31e-10
EggNOG OGs2EQ0D@1|root,33HKU@2|Bacteria,1N7ES@1224|Proteobacteria,2UF3T@28211|Alphaproteobacteria,3K0WY@41294|Bradyrhizobiaceae
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.847779-UTR-P-wetherbeei_contig58479:183..1861683186865.847779-UTR-P-wetherbeei_contig58479:183..186Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58479 184..186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.8603177-CDS-P-wetherbeei_contig58479:186..3721683186865.8603177-CDS-P-wetherbeei_contig58479:186..372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58479 187..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58479.1.1prot_P-wetherbeei_contig58479.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58479 187..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58479.1.1

>prot_P-wetherbeei_contig58479.1.1 ID=prot_P-wetherbeei_contig58479.1.1|Name=mRNA_P-wetherbeei_contig58479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MNDAYVIEVDGDAAGLALAERGGWRFAATATPYWPLDGRRFRDVRHAERA
VRELRRIKNAA*
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mRNA from alignment at P-wetherbeei_contig58479:184..372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58479.1.1 ID=mRNA_P-wetherbeei_contig58479.1.1|Name=mRNA_P-wetherbeei_contig58479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig58479:184..372+ (Phaeothamnion wetherbeei SAG_119_79)
CCGATGAACGACGCTTACGTGATCGAGGTCGACGGCGATGCCGCCGGTCT
CGCCCTTGCCGAACGCGGCGGCTGGCGCTTTGCCGCCACCGCGACCCCCT
ACTGGCCGCTCGACGGACGCCGTTTCCGCGACGTGCGCCATGCCGAACGC
GCGGTGCGCGAACTGCGCCGCATCAAGAACGCCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58479:184..372+

>mRNA_P-wetherbeei_contig58479.1.1 ID=mRNA_P-wetherbeei_contig58479.1.1|Name=mRNA_P-wetherbeei_contig58479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig58479:184..372+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGACGCTTACGTGATCGAGGTCGACGGCGATGCCGCCGGTCTCGC
CCTTGCCGAACGCGGCGGCTGGCGCTTTGCCGCCACCGCGACCCCCTACT
GGCCGCTCGACGGACGCCGTTTCCGCGACGTGCGCCATGCCGAACGCGCG
GTGCGCGAACTGCGCCGCATCAAGAACGCCGCCTGA
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