mRNA_P-wetherbeei_contig58454.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58454.1.1
Unique NamemRNA_P-wetherbeei_contig58454.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: UPI001C3C9EAB (c-type cytochrome n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3C9EAB)

HSP 1 Score: 234 bits (596), Expect = 2.110e-75
Identity = 117/153 (76.47%), Postives = 129/153 (84.31%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPGGTVAATLPLSGLDADATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTNEGGKG 459
            E+GE VNPASTDFVPRPEWYFFFLFELLKIF+GQNALMP+IMATFI+PNILM LLI TPFIDR PERRIQ+RPIAL +GIAVIVFLAYMT  G E+P       LPLSGL+ADA A AGAQ+FL  GCTSCH + GVGA+GPGP L NEG +G
Sbjct:   52 EMGEPVNPASTDFVPRPEWYFFFLFELLKIFKGQNALMPVIMATFIIPNILMALLILTPFIDRNPERRIQRRPIALLSGIAVIVFLAYMTILGGESPESLGGEGLPLSGLEADADAQAGAQLFLANGCTSCHAVGGVGASGPGPALDNEGSRG 204          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: UPI001C3D984D (c-type cytochrome n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D984D)

HSP 1 Score: 217 bits (553), Expect = 6.700e-69
Identity = 111/152 (73.03%), Postives = 127/152 (83.55%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPGGTVAATLPLSGLDADATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTNEGGK 456
            E+GE VNPASTDFVPRPEWYFFFLFELLKIF+GQNALMP+IMATFI+PNILMVLLI TPFIDR PERRI+KRPIAL TGI VI FLAY+TNKG+     + A  LPLSGL+++A A AG+Q++L   CTSCH I GVG  GPGPNL++ G K
Sbjct:   52 EMGEPVNPASTDFVPRPEWYFFFLFELLKIFKGQNALMPVIMATFIIPNILMVLLILTPFIDRNPERRIEKRPIALVTGIVVIAFLAYLTNKGASEEA-SAADGLPLSGLESNAAALAGSQLWLE-NCTSCHMIAGVGQPGPGPNLSDVGTK 201          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: A0A538BZ27_9ACTN (C-type cytochrome n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538BZ27_9ACTN)

HSP 1 Score: 130 bits (327), Expect = 8.850e-35
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPGGTVAATLPLSGLDADATAA-----AGAQIFLTAGCTSCHQIKGVGATGPGPNLTNEGGK 456
            ELG + NP +T +VPRPEWYFFFLFE+L++ +  N L P+  AT  VP I +V+L   PFIDRGPERR ++RPIA  TGI VI  +A +T +G++A   T   T   S + A   A      AG Q+   +GC +CH++   G  GPGPNLT+ G K
Sbjct:   52 ELGSKANPTTTTYVPRPEWYFFFLFEVLRVIKPPN-LTPL--ATIGVPTIGLVILFLLPFIDRGPERRPERRPIATLTGIFVIGAMALLTYEGAQAGSPTAIETPTPSRVRAAGGALLREFEAGKQVVAQSGCLACHKLGDNGNDGPGPNLTHIGSK 205          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: A0A7V9K5C8_9ACTN (C-type cytochrome n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7V9K5C8_9ACTN)

HSP 1 Score: 130 bits (326), Expect = 1.100e-34
Identity = 71/148 (47.97%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPGGTVAATLPLSGLDADATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTN 444
            ELG + +P +TDFVPRPEWYFFFLFELL++ +       ++MAT  +P I MVLLI  PFIDR PER   KRPIA   GI  I  +AY+T  G+      +A T  +  L+      AG  +   +GC +CHQI   G +GPGPNLT+
Sbjct:   52 ELGPKADPTTTDFVPRPEWYFFFLFELLRVVKPPEL---VVMATVGIPTICMVLLILLPFIDRNPERNPLKRPIATLAGITTIGAMAYLTLLGA------LAGTPTVIELETKPQFEAGRDVAAQSGCLACHQIGENGNSGPGPNLTD 190          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: A0A6I2V6W0_9ACTN (C-type cytochrome n=2 Tax=root TaxID=1 RepID=A0A6I2V6W0_9ACTN)

HSP 1 Score: 126 bits (317), Expect = 3.010e-33
Identity = 71/155 (45.81%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPGGT-----VAATLPLSGLDADATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTNEG 450
            ELG + +P ST + PRPEWYFFFLFELL++ +   AL+P+  AT  VP I ++LL   PF DRGPERR ++RPIA   GI V+  + Y+T  G+ A   T     V A +   G +A A   AG+Q+   +GC +CH+    G +GPGP+LT  G
Sbjct:   52 ELGPKADPTSTTYTPRPEWYFFFLFELLRVIKPP-ALVPL--ATIGVPTICLILLFLLPFYDRGPERRPERRPIATTAGIFVVCAIGYLTYLGAAAGPPTQIDIPVPANVSSQGPEAVANFEAGSQVVAQSGCAACHKFGENGNSGPGPSLTKIG 203          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: UPI0003FC32F0 (c-type cytochrome n=1 Tax=Solirubrobacter sp. URHD0082 TaxID=1298857 RepID=UPI0003FC32F0)

HSP 1 Score: 126 bits (316), Expect = 4.920e-33
Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEA--PGGTVAATLPLSGLDADATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTNEGGK 456
            ELG + +P +T +VPRPEWYFFFLFELL++ +    L+P+  AT  +P + ++LLIA PFIDRGPERR ++RPIA  TGI VI  + Y+T  G+ A  P     A  P           AG ++   +GC +CH+I   G  GPGP+LT+ G K
Sbjct:   52 ELGPKADPTTTTYVPRPEWYFFFLFELLRVIKPA-VLVPV--ATIGIPTVCLILLIALPFIDRGPERRPERRPIATLTGIFVICAMGYLTYLGAAAGSPNSIDMAVQPQF--------EAGKEVAAQSGCLACHKIGENGNDGPGPHLTDIGDK 194          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: A0A2W6C163_9ACTN (Cytochrome B n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A2W6C163_9ACTN)

HSP 1 Score: 124 bits (310), Expect = 3.190e-32
Identity = 68/154 (44.16%), Postives = 91/154 (59.09%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPGGTVAATLPLSGLDAD--ATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTNEGGK 456
            E G + +P +T +VPRP+WYF+FLFE+L++ R      P+  A   VP I MVLL   PF DR PERRI++RP+AL  GIA I  +A++T  G++          P S L A   AT  AG+ +   +GC +CH I   G  GPGP LT+ G K
Sbjct:   52 EFGPKADPTTTTYVPRPDWYFYFLFEVLRVMRNVPEFTPL--AAIGVPTIAMVLLFLLPFYDRSPERRIERRPVALVAGIATIAAIAFLTYSGADTGSPNSVDLKPPSNLSAAQVATFRAGSLVVGESGCLACHVIGTNGNNGPGPPLTHIGSK 203          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: A0A7W1M3J8_9ACTN (C-type cytochrome n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7W1M3J8_9ACTN)

HSP 1 Score: 122 bits (307), Expect = 8.760e-32
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEA-PGGTVAATLPLSGLDADATAA----AGAQIFLTAGCTSCHQIKGVGATGPGPNLTN 444
            ELG + NP +T +VPRPEWYFFFLFE+L++ +  +    + +AT  VP + MVLL   PF DR PERR    PIA  TGIAVI  +A++T  G+ A P  T+    P +   A + +     AG ++   +GC +CH+I   G  GPGP+LT+
Sbjct:   52 ELGSKANPTTTTYVPRPEWYFFFLFEVLRVVKPPSL---VGLATIGVPTLCMVLLFLLPFYDRSPERRXXXXPIATITGIAVIAAMAFLTYSGAAAGPPTTIETATPAAVKSAGSASLTEYEAGKKVVAQSGCLACHKIGENGNAGPGPDLTH 201          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: UPI00040D3419 (c-type cytochrome n=1 Tax=Solirubrobacter soli TaxID=363832 RepID=UPI00040D3419)

HSP 1 Score: 122 bits (305), Expect = 1.540e-31
Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPG-GTVAATLPLSGLDADATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTNEG 450
            ELG + +P +T +VPRPEWYFFFLFE+L++ +    L+P   AT  VP I M++L   PFIDRGPERR ++RPIA  +GI VIV + Y+T  G+EA    ++   +P       A    G  +   +GC +CH+I   G  GPGP+L+N G
Sbjct:   52 ELGPKADPTTTTYVPRPEWYFFFLFEVLRVIKPPE-LVPF--ATIGVPTICMIMLFLLPFIDRGPERRPERRPIATLSGILVIVAMGYLTFMGAEAGSPNSIDMVVP-------ANLEKGKLVAAQSGCLACHKIGENGNDGPGPHLSNIG 192          
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Match: A0A6J4RSU6_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=uncultured Solirubrobacteraceae bacterium TaxID=1162706 RepID=A0A6J4RSU6_9ACTN)

HSP 1 Score: 121 bits (304), Expect = 1.570e-31
Identity = 68/153 (44.44%), Postives = 91/153 (59.48%), Query Frame = 1
Query:    1 ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNILMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPGGT-----VAATLPLSGLDADATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTN 444
            ELG + +P +T + PRPEWYF+FLFELLK+ +    L+P+  AT  VP I M+LL   PF DRGPERR ++RP+A   GI  I+ + Y+T  G+EA   T       A +   G    A   AG Q+   +GC +CH+I   G  GPGP LT+
Sbjct:   27 ELGPKADPTTTTYTPRPEWYFYFLFELLKVIKPPE-LVPL--ATIGVPTICMILLFLLPFYDRGPERRPERRPVATTAGILTIIAMGYLTYLGAEAGPPTQIDMPTPARIEAQGGQMLAEYNAGKQVVAQSGCQACHKIGANGNDGPGPPLTD 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C9EAB2.110e-7576.47c-type cytochrome n=1 Tax=Miltoncostaea marina Tax... [more]
UPI001C3D984D6.700e-6973.03c-type cytochrome n=1 Tax=Miltoncostaea oceani Tax... [more]
A0A538BZ27_9ACTN8.850e-3547.77C-type cytochrome n=1 Tax=Actinomycetia bacterium ... [more]
A0A7V9K5C8_9ACTN1.100e-3447.97C-type cytochrome n=1 Tax=Thermoleophilaceae bacte... [more]
A0A6I2V6W0_9ACTN3.010e-3345.81C-type cytochrome n=2 Tax=root TaxID=1 RepID=A0A6I... [more]
UPI0003FC32F04.920e-3346.10c-type cytochrome n=1 Tax=Solirubrobacter sp. URHD... [more]
A0A2W6C163_9ACTN3.190e-3244.16Cytochrome B n=1 Tax=Solirubrobacterales bacterium... [more]
A0A7W1M3J8_9ACTN8.760e-3243.79C-type cytochrome n=1 Tax=Solirubrobacterales bact... [more]
UPI00040D34191.540e-3145.03c-type cytochrome n=1 Tax=Solirubrobacter soli Tax... [more]
A0A6J4RSU6_9ACTN1.570e-3144.44Uncharacterized protein (Fragment) n=1 Tax=uncultu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58454contigP-wetherbeei_contig58454:31..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1283299.AUKG01000001_gene1796
PFAMsCytochrom_B_C,Cytochrom_C,Cytochrome_CBB3
Model size462
Max annot lvl84995|Rubrobacteria
KEGG koko:K03888
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00151
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.9e-30
EggNOG OGsCOG1290@1|root,COG2010@1|root,COG1290@2|Bacteria,COG2010@2|Bacteria,2HDYV@201174|Actinobacteria,4CQSB@84995|Rubrobacteria
DescriptionCytochrome b subunit of the bc
Cds size462
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.5912333-CDS-P-wetherbeei_contig58454:30..4921683186865.5912333-CDS-P-wetherbeei_contig58454:30..492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58454 31..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58454.1.1prot_P-wetherbeei_contig58454.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58454 31..492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58454.1.1

>prot_P-wetherbeei_contig58454.1.1 ID=prot_P-wetherbeei_contig58454.1.1|Name=mRNA_P-wetherbeei_contig58454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
ELGEQVNPASTDFVPRPEWYFFFLFELLKIFRGQNALMPIIMATFIVPNI
LMVLLIATPFIDRGPERRIQKRPIALFTGIAVIVFLAYMTNKGSEAPGGT
VAATLPLSGLDADATAAAGAQIFLTAGCTSCHQIKGVGATGPGPNLTNEG
GKGR
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mRNA from alignment at P-wetherbeei_contig58454:31..492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58454.1.1 ID=mRNA_P-wetherbeei_contig58454.1.1|Name=mRNA_P-wetherbeei_contig58454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig58454:31..492- (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGGGCGAGCAGGTCAACCCGGCGAGCACCGACTTCGTGCCGCGGCC GGAGTGGTACTTCTTCTTCCTGTTCGAGCTGCTGAAGATCTTCCGCGGCC AGAACGCGCTGATGCCGATCATCATGGCCACGTTCATCGTGCCGAACATC CTGATGGTGCTGCTCATCGCGACCCCGTTCATCGACCGGGGGCCCGAGCG TCGGATCCAGAAGCGTCCGATCGCCCTCTTCACCGGGATCGCGGTCATCG TCTTCCTGGCGTACATGACCAACAAGGGCTCCGAGGCTCCGGGTGGCACC GTGGCGGCGACCCTGCCGCTCAGCGGGCTCGACGCCGACGCCACCGCAGC GGCGGGCGCTCAGATCTTCCTCACCGCCGGCTGTACGAGCTGCCACCAGA TCAAGGGGGTCGGAGCCACCGGCCCCGGTCCGAACCTCACCAACGAGGGG GGAAAGGGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58454:31..492-

>mRNA_P-wetherbeei_contig58454.1.1 ID=mRNA_P-wetherbeei_contig58454.1.1|Name=mRNA_P-wetherbeei_contig58454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig58454:31..492- (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGGGCGAGCAGGTCAACCCGGCGAGCACCGACTTCGTGCCGCGGCC
GGAGTGGTACTTCTTCTTCCTGTTCGAGCTGCTGAAGATCTTCCGCGGCC
AGAACGCGCTGATGCCGATCATCATGGCCACGTTCATCGTGCCGAACATC
CTGATGGTGCTGCTCATCGCGACCCCGTTCATCGACCGGGGGCCCGAGCG
TCGGATCCAGAAGCGTCCGATCGCCCTCTTCACCGGGATCGCGGTCATCG
TCTTCCTGGCGTACATGACCAACAAGGGCTCCGAGGCTCCGGGTGGCACC
GTGGCGGCGACCCTGCCGCTCAGCGGGCTCGACGCCGACGCCACCGCAGC
GGCGGGCGCTCAGATCTTCCTCACCGCCGGCTGTACGAGCTGCCACCAGA
TCAAGGGGGTCGGAGCCACCGGCCCCGGTCCGAACCTCACCAACGAGGGG
GGAAAGGGGAGG
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