mRNA_P-wetherbeei_contig58440.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58440.1.1
Unique NamemRNA_P-wetherbeei_contig58440.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7V9AKV2_9CHLR (DNA repair exonuclease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9AKV2_9CHLR)

HSP 1 Score: 210 bits (535), Expect = 1.270e-64
Identity = 97/124 (78.23%), Postives = 111/124 (89.52%), Query Frame = 1
Query:   28 IRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYEDVH 399
            IRIAH+SDTHLGYR LNK +PE+GRNQRT+DVD+AFER I DIL R VD VIH GDVFHH RPTW S+R FIRQMRRIE+AGIPT+VIAGNHDTPR+RTGGSAYSV++LAL E+RF A+YED+H
Sbjct:    5 IRIAHVSDTHLGYRALNKAEPESGRNQRTVDVDRAFERTIDDILGRRVDAVIHGGDVFHHARPTWQSMRHFIRQMRRIERAGIPTLVIAGNHDTPRIRTGGSAYSVIELALSEVRFVAEYEDIH 128          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7V9VTK1_9CHLR (Exonuclease SbcCD subunit D n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VTK1_9CHLR)

HSP 1 Score: 209 bits (531), Expect = 5.080e-64
Identity = 95/124 (76.61%), Postives = 110/124 (88.71%), Query Frame = 1
Query:   28 IRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYEDVH 399
            I+IAH SDTHLGYR LNK+DP++GRNQRT+DVD A+ R + DIL R+VD VIH+GDVFHH+RPTW SLR FIRQMRR+EQAGIPT++IAGNHDTPR+RTGGSAYSVL+LALPEI F  DYE VH
Sbjct:    5 IQIAHFSDTHLGYRALNKIDPDSGRNQRTLDVDNAYTRVVDDILERNVDAVIHAGDVFHHSRPTWQSLRHFIRQMRRLEQAGIPTLIIAGNHDTPRIRTGGSAYSVLELALPEIAFVCDYEHVH 128          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7W0PN42_9CHLR (Exonuclease SbcCD subunit D n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PN42_9CHLR)

HSP 1 Score: 202 bits (513), Expect = 2.140e-61
Identity = 93/121 (76.86%), Postives = 105/121 (86.78%), Query Frame = 1
Query:   37 AHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYEDVH 399
            AH SDTHLGYR  ++ DPET RNQRT+D+D AF R I DI+ R+VD VIHSGDVFHH RPTW ++R FIRQMRR+EQAGIPT+VIAGNHDTPR+RTGGSAYSVL+LALP IRF ADYEDVH
Sbjct:    1 AHFSDTHLGYRATSRFDPETSRNQRTVDIDNAFTRTIDDIIAREVDGVIHSGDVFHHARPTWQAMRHFIRQMRRLEQAGIPTLVIAGNHDTPRVRTGGSAYSVLELALPAIRFVADYEDVH 121          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7W0KC64_9CHLR (Metallophosphoesterase n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KC64_9CHLR)

HSP 1 Score: 198 bits (503), Expect = 8.060e-60
Identity = 92/123 (74.80%), Postives = 105/123 (85.37%), Query Frame = 1
Query:   28 IRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYEDV 396
            +R+AH SDTHLGYR   + DPETGRNQRT+DVD AF R I DI+RR+VD  IHSGDVFHH RPTW SLR FIRQMRR+E AGIPT+VIAGNHDTPR+RTGGSA+SVL+LALP IRF  ++EDV
Sbjct:    5 VRLAHFSDTHLGYRATARFDPETGRNQRTVDVDHAFTRTIDDIIRREVDGAIHSGDVFHHARPTWQSLRHFIRQMRRLEVAGIPTLVIAGNHDTPRVRTGGSAFSVLELALPAIRFVTEFEDV 127          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7V9AZL6_9CHLR (DNA repair exonuclease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9AZL6_9CHLR)

HSP 1 Score: 189 bits (480), Expect = 2.410e-56
Identity = 90/136 (66.18%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    1 MTERPTLP---PIRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYEDVH 399
            MTE P      PIRIAH SDTHLGYR ++K+DP TGRNQR +D++ AFER I D++ R VD+ IHSGDVFHHTRPTWHSL   IRQ+RR+E AGI T+VI+GNHDTPRLR  GSA+S+L L LPE+RF A YE  H
Sbjct:    1 MTEAPANAADRPIRIAHFSDTHLGYRAMSKLDPVTGRNQRAVDIEVAFERVIEDVVARGVDVAIHSGDVFHHTRPTWHSLGHLIRQLRRLEAAGIRTLVISGNHDTPRLRMSGSAFSLLALVLPEVRFVAGYESEH 136          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7V8X724_9CHLR (Exonuclease SbcCD subunit D n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8X724_9CHLR)

HSP 1 Score: 182 bits (463), Expect = 7.250e-54
Identity = 81/123 (65.85%), Postives = 106/123 (86.18%), Query Frame = 1
Query:   25 PIRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYED 393
            P+RIAH+SDTHLGYR L   D  TGRNQR++D+D+AF +A+ DIL+++VDLVIH GDVFH +RP+W+++R F+ +MRRIEQAGIPTVVIAGNHDTPR R GGS +S+L++ALP+IR +A YE+
Sbjct:    4 PLRIAHISDTHLGYRALPVQDAATGRNQRSVDIDRAFSKAVDDILKQNVDLVIHGGDVFHQSRPSWYAVRHFVTEMRRIEQAGIPTVVIAGNHDTPRYRAGGSVFSLLEVALPDIRISAGYEE 126          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A6J4V4T9_9CHLR (SbcD_Mre11 n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4V4T9_9CHLR)

HSP 1 Score: 182 bits (462), Expect = 1.120e-53
Identity = 82/122 (67.21%), Postives = 102/122 (83.61%), Query Frame = 1
Query:   25 PIRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYE 390
            P+RIAHL+DTHLGYR   + DPETGRNQR +DV++AFE A+  I+  DVDLVIH+GDVFH TRP+W +LR F+RQMRRIE AG+P++VI GNHDTPRLRT GSA+ +L++ALP + FAA YE
Sbjct:    6 PLRIAHLADTHLGYRAFGRADPETGRNQRAVDVERAFEAAVDAIVAADVDLVIHAGDVFHQTRPSWAALRCFVRQMRRIEAAGLPSLVIGGNHDTPRLRTTGSAFDLLEMALPGVTFAAGYE 127          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7V9KHW8_9CHLR (Metallophosphoesterase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9KHW8_9CHLR)

HSP 1 Score: 181 bits (460), Expect = 2.240e-53
Identity = 83/132 (62.88%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    1 MTERPTLPPIRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYEDV 396
            MT RP    +RIAHL+D+HLGYR L +  PETGRNQR++D++++F  AI DILRRDVDL++H+GD+FHHTRP+W +LR F+R MRR+E AGIPT++I GNHDTPRLRT GS + +L+LALP + F A YE V
Sbjct:    1 MTHRP----LRIAHLADSHLGYRALGRSCPETGRNQRSVDIERSFMAAIDDILRRDVDLILHAGDLFHHTRPSWSTLRCFVRTMRRVEAAGIPTIIIGGNHDTPRLRTTGSVFGLLELALPGMTFEAGYEIV 128          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7V9VC50_9CHLR (Exonuclease SbcCD subunit D n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VC50_9CHLR)

HSP 1 Score: 180 bits (457), Expect = 5.580e-53
Identity = 81/122 (66.39%), Postives = 102/122 (83.61%), Query Frame = 1
Query:   25 PIRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYE 390
            P+RIAH+SDTHLGYR  +++DP TGRNQR +D+++A+E AI  IL++DVDLVIH GDVFHHTRP+W SLR F+ Q RR+++A +P VVIAGNHDTPRLR  GSA+S+L+LALP I FA  YE
Sbjct:    4 PLRIAHVSDTHLGYRAASRIDPATGRNQRALDIERAYEAAIDSILKQDVDLVIHGGDVFHHTRPSWSSLRWFVVQTRRLQEAKLPAVVIAGNHDTPRLRISGSAFSLLELALPGIHFATGYE 125          
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Match: A0A7W0S4Y9_9CHLR (DNA repair exonuclease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0S4Y9_9CHLR)

HSP 1 Score: 178 bits (451), Expect = 4.190e-52
Identity = 84/123 (68.29%), Postives = 102/123 (82.93%), Query Frame = 1
Query:   28 IRIAHLSDTHLGY--RGLNKVDPETGRNQRTIDVDQAFERAITDILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGNHDTPRLRTGGSAYSVLDLALPEIRFAADYE 390
            +RIAHLSDTHLGY  RG  + DP +GRNQR++D++ A+E AI+DIL RDVDLV+H+GDVFHHTRPTWH+LR FIRQ RR+E+AG+  +VIAGNHDT RLRT G+A+SVLDLALPE  F    E
Sbjct:    1 MRIAHLSDTHLGYAYRGFTRTDPVSGRNQRSLDIEAAYEAAISDILTRDVDLVVHAGDVFHHTRPTWHALRCFIRQSRRLEEAGLRYIVIAGNHDTARLRTTGTAFSVLDLALPETMFVTGDE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58440.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9AKV2_9CHLR1.270e-6478.23DNA repair exonuclease n=1 Tax=Chloroflexia bacter... [more]
A0A7V9VTK1_9CHLR5.080e-6476.61Exonuclease SbcCD subunit D n=1 Tax=Chloroflexia b... [more]
A0A7W0PN42_9CHLR2.140e-6176.86Exonuclease SbcCD subunit D n=1 Tax=Chloroflexia b... [more]
A0A7W0KC64_9CHLR8.060e-6074.80Metallophosphoesterase n=2 Tax=Chloroflexia bacter... [more]
A0A7V9AZL6_9CHLR2.410e-5666.18DNA repair exonuclease n=1 Tax=Chloroflexia bacter... [more]
A0A7V8X724_9CHLR7.250e-5465.85Exonuclease SbcCD subunit D n=2 Tax=Chloroflexia b... [more]
A0A6J4V4T9_9CHLR1.120e-5367.21SbcD_Mre11 n=1 Tax=uncultured Thermomicrobiales ba... [more]
A0A7V9KHW8_9CHLR2.240e-5362.88Metallophosphoesterase n=1 Tax=Chloroflexia bacter... [more]
A0A7V9VC50_9CHLR5.580e-5366.39Exonuclease SbcCD subunit D n=1 Tax=Chloroflexia b... [more]
A0A7W0S4Y9_9CHLR4.190e-5268.29DNA repair exonuclease n=1 Tax=Chloroflexia bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58440contigP-wetherbeei_contig58440:58..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42256.RradSPS_2355
PFAMsMetallophos,Metallophos_2
Model size399
Max annot lvl2|Bacteria
KEGG koko:K03547,ko:K05970
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.5e-32
EggNOG OGsCOG0420@1|root,COG0420@2|Bacteria
Ec32 ortholog descriptionmeiotic recombination 11
Ec32 orthologEc-25_001310.1
EC3.1.1.53
Description3'-5' exonuclease activity
Cds size399
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.566834-CDS-P-wetherbeei_contig58440:57..4561683186865.566834-CDS-P-wetherbeei_contig58440:57..456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58440 58..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58440.1.1prot_P-wetherbeei_contig58440.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58440 58..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58440.1.1

>prot_P-wetherbeei_contig58440.1.1 ID=prot_P-wetherbeei_contig58440.1.1|Name=mRNA_P-wetherbeei_contig58440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MTERPTLPPIRIAHLSDTHLGYRGLNKVDPETGRNQRTIDVDQAFERAIT
DILRRDVDLVIHSGDVFHHTRPTWHSLRLFIRQMRRIEQAGIPTVVIAGN
HDTPRLRTGGSAYSVLDLALPEIRFAADYEDVH
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mRNA from alignment at P-wetherbeei_contig58440:58..456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58440.1.1 ID=mRNA_P-wetherbeei_contig58440.1.1|Name=mRNA_P-wetherbeei_contig58440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig58440:58..456+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGAGCGTCCCACCCTGCCGCCCATCCGCATCGCCCATCTCTCGGA CACCCATCTCGGCTACCGCGGTCTGAACAAGGTCGATCCCGAGACGGGGC GCAACCAGCGCACGATCGATGTCGATCAGGCCTTCGAGCGCGCCATCACC GACATCCTCCGCCGTGATGTCGATCTCGTGATCCACAGCGGCGATGTCTT CCATCACACCCGCCCGACCTGGCATTCGCTCCGCCTCTTCATCCGCCAGA TGCGCCGGATCGAGCAGGCCGGCATCCCGACCGTCGTCATCGCGGGCAAC CACGACACGCCGCGCCTGCGCACCGGCGGCTCCGCCTACTCCGTGCTCGA CCTCGCGCTGCCGGAGATCCGCTTCGCCGCCGACTACGAGGATGTCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58440:58..456+

>mRNA_P-wetherbeei_contig58440.1.1 ID=mRNA_P-wetherbeei_contig58440.1.1|Name=mRNA_P-wetherbeei_contig58440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig58440:58..456+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGAGCGTCCCACCCTGCCGCCCATCCGCATCGCCCATCTCTCGGA
CACCCATCTCGGCTACCGCGGTCTGAACAAGGTCGATCCCGAGACGGGGC
GCAACCAGCGCACGATCGATGTCGATCAGGCCTTCGAGCGCGCCATCACC
GACATCCTCCGCCGTGATGTCGATCTCGTGATCCACAGCGGCGATGTCTT
CCATCACACCCGCCCGACCTGGCATTCGCTCCGCCTCTTCATCCGCCAGA
TGCGCCGGATCGAGCAGGCCGGCATCCCGACCGTCGTCATCGCGGGCAAC
CACGACACGCCGCGCCTGCGCACCGGCGGCTCCGCCTACTCCGTGCTCGA
CCTCGCGCTGCCGGAGATCCGCTTCGCCGCCGACTACGAGGATGTCCAC
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