mRNA_P-wetherbeei_contig5838.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5838.1.2
Unique NamemRNA_P-wetherbeei_contig5838.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A6H5KPI6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPI6_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 2.910e-63
Identity = 136/312 (43.59%), Postives = 176/312 (56.41%), Query Frame = 1
Query:  226 ATTGTRSPREDAALLDRFDVVDADGDGVLEKSEIRELVAGTGGVSLDSPGEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQPADGNN---FPVHKYVLRRRAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLPAGLGLGFGPTAATAEAAWVKVMDGPERSHRDAGLVPGAVYTYSLQAWNALGHSETVLFEAITASRNC 1152
            A  G + P  +A + D F+  D D +GV+   EI+ LV   GG  LD   EI+AGVA +++ LD N D  LSRSD+  +W RLG+LLTV E A+WVLH+ QLP  VA+ F  + VTGYDFPEL A  GALLE D+GI+   F+R LVRSM+WKLWGMGE+P   +G+    ++ACG++ L W+Q    N+   FPVHK+VLRR                                      ALL A             +  WV VM GP  +  DAGL PGA Y Y+LQAWNALGHS +V  + + +S +C
Sbjct:   75 AAGGVQLP--EAVVDDIFEHADKDKNGVIGDEEIQYLVERAGGSRLDDASEIEAGVASVIKNLDRNADHALSRSDLNVYWDRLGTLLTVDEAAQWVLHAAQLPQEVADAFVNNMVTGYDFPELAARQGALLEQDLGITRPAFKRNLVRSMQWKLWGMGEEPAAPAGLRA-TSSACGAVSLEWDQTCPANSELSFPVHKHVLRR--------------------------------------ALLGA---------EGERDGGWVTVMAGPGGTFFDAGLQPGAAYRYALQAWNALGHSGSVEVDVVASSEDC 336          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A7S4R769_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R769_9STRA)

HSP 1 Score: 157 bits (396), Expect = 6.810e-37
Identity = 93/291 (31.96%), Postives = 152/291 (52.23%), Query Frame = 1
Query:  250 REDAALLDRFDVVDADGDGVLEKSEIRELVAGT-GGVSLDSPGEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQPADGNNFPVHKYVLRRRAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLPAGLGLGFGPTAATAEAAWVKVMDGPERSHRDAGLVPGAVYTYSLQAWNALGHSETV 1119
            R++A+    F  VD DGDG+LE  E+   ++ + GG + D+  E++AGV +++ +LD N D  L +SDV + W +L SLL   EVA+WV+++VQLP+++   FR++SVTGYDFPELI +GG  +++++ I  ++FRR+L+  ++  L G+G  P   + +      +  ++   W++ +   +FPVH Y ++RRA                                                P ++   + WV V  G E    D+GL  G  Y Y  QAWN++G S+ V
Sbjct:  108 RDEASAFSFFRSVDHDGDGMLEPQELGNFLSESIGGSAFDTQAEVEAGVNKVMEKLDRNHDSGLDKSDVDAFWVQLESLLNADEVADWVIYAVQLPEYLGNIFRENSVTGYDFPELIENGGEAMQTELRIEQSSFRRKLIWHIKACLLGVGSTPTVPTKIK-HKLESFSTVSFSWDK-STAESFPVHSYRIQRRAVGLHDDGDGTRKVVNSHHTADPPSTVQ---------------------PLSSPPTSEWVTVYVGGECEFVDSGLELGHNYVYRAQAWNSIGRSDWV 375          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A7S4V3N0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V3N0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.810e-36
Identity = 89/288 (30.90%), Postives = 145/288 (50.35%), Query Frame = 1
Query:  250 REDAALLDRFDVVDADGDGVLEKSEIRELVAGT-GGVSLDSPGEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQPADGNNFPVHKYVLRRRAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLPAGLGLGFGPTAATAEAAWVKVMDGPERSHRDAGLVPGAVYTYSLQAWNALGHS 1110
            R++A+    F  VD DGDG+LE  E+   +  + GG + D+  E++ GV +++ +LD N D  L +SDV ++W  L SLL   EVA+WV+H+VQLP+++   FR++ VTGYDFPEL+ + G  + +++GI  ++FR+++VR +  ++ G+G  P   S +      +C ++ + W++ +    FPVH Y ++RRA                                     L                   W  +  G E    D+GL  G  Y Y +QAWN++G S
Sbjct:  132 RDEASAFSFFSSVDEDGDGMLEPPEVANFLRESIGGTAFDTQAEVETGVNKIMEKLDRNHDLGLDKSDVEAYWKHLESLLNADEVADWVVHAVQLPEYLGNIFRENMVTGYDFPELVENDGEAIRTELGIERSSFRKKIVRHIHARMLGIGSTPTIPSEIK-HKLESCSTVNISWDR-STAEGFPVHSYRIKRRAVGLHDGDGPRKVITLDAGPGTHHMVNSPSNVQSLSLPLASD----------------WATIYVGGESEFVDSGLELGHNYVYRVQAWNSVGRS 401          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A7S4R8Z4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R8Z4_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.180e-35
Identity = 94/294 (31.97%), Postives = 157/294 (53.40%), Query Frame = 1
Query:  250 REDAALLDRFDVVDADGDGVLEKSEIRELVAGT-GGVSLDSPGEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQPADGNNFPVHKYVLRRRAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLPAGLGLGFGPTAATAEAAWVKVMDGPERSHRDAGLVPGAVYTYSLQAWNALGHSETVLFE 1128
            R++A+    F  VD DGDG+LE  E+   ++ + GG + D+  E++AGV +++ +LD N D  L +SDV + W +L SLL   EVA+WV+++VQLP+++   FR++SVTGYDFPELI +GG  +++++ I  ++FRR+L+  ++ +L G+G  P   S +  +  ++  ++   W++ +   +FPVH Y ++RR                                     +            + +T+E  WV V  G E    D+GL  G  Y Y  QAWN++G S+ V  +
Sbjct:  108 RDEASAFSFFRSVDHDGDGMLEPQELGNFLSESIGGSAFDTQAEVEAGVNKVMEKLDRNHDSGLDKSDVDAFWVQLESLLNADEVADWVIYAVQLPEYLGNIFRENSVTGYDFPELIENGGEAMKTELRIEQSSFRRKLIWHIKARLLGVGSTPTVPSKMKYKLESSS-TVSFSWDK-SSAESFPVHIYRIQRRDVGLHHDGDGTRKVVNHLAARPRTHQTADPPSTVQRLS------------SPSTSE--WVTVYVGGECEFVDSGLELGHNYVYRAQAWNSIGRSDWVTVD 385          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A7S2KT34_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KT34_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.460e-35
Identity = 97/280 (34.64%), Postives = 142/280 (50.71%), Query Frame = 1
Query:  283 VVDADGDGVLEKSEIRELVAGT-GGVSLDSPGEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQPADGNNFPVHKYVLRRRAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLPAGLGLG---FGPTAATAEAAWVKVMDGPERSHRDAGLVPGAVYTYSLQAWNALGHS 1110
            V+D + DGV++ +E+   +  + GG + D+  E++  V R++ +LD N D  L  SDV SHW +L S+LTV EV +WVL++VQLP+ VA  F +HSVTGYDFPELI + G  +  ++GI   +FR++L+RS+  KL G+G  P         N  +C  + L W++PA   +FPVH Y ++RRA +                                                    + + A WV V  G + S  D+ L     Y Y LQAWN +GHS
Sbjct:  125 VLDTNRDGVVKPNEMANFIRNSIGGSAFDTETEVNFEVERIMGELDQNQDENLDLSDVFSHWKQLESVLTVDEVKDWVLYAVQLPEKVANTFVEHSVTGYDFPELIENDGDAMRVELGIEKQSFRKKLLRSIHAKLLGIGSVPTTPPSFK-HNLESCSVVNLTWKKPA-AISFPVHSYRVQRRAVSQRRPTRNNLDFCEEKRNEIDAVQDIFGEGKCNTYLSDKEAHEQNDKFISKEYSASSADWVTVYIGVDTSFLDSNLEHDHKYVYRLQAWNPIGHS 402          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A7S1VXY7_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VXY7_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.900e-34
Identity = 91/288 (31.60%), Postives = 146/288 (50.69%), Query Frame = 1
Query:  277 FDVVDADGDGVLEKSEIRELVAGTGGVSLDSPGEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQPADGNNFPVHKYVLRRRAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLPAGLGLGFGPTAATAEAAWVKVMDGPERSHRDAGLVPGAVYTYSLQAWNALGHSETVLFEAITA 1140
            FD +D DGDG +E  E+   +    G  L++   +D+ V  ++ +LD N D  L  +D+  +W +L +LLT  EVAEW++++VQLP  V + F +HSVTGYDFPE++ +GG +L  D+GIS ++FR ++VR M+ ++ G+G +P   S    +   +C ++ L WE+ A G  FPVH Y ++RR                                          G G+ +   A  + + W  +  G +    D+ L  G  Y Y +QAWN++G S   + +   A
Sbjct:  111 FDSIDKDGDGQIEPEEVAMFLKNQIG-ELETQQAVDSEVVTVMARLDQNHDNGLGMADMHEYWMQLETLLTAEEVAEWIVYAVQLPGSVGKMFLEHSVTGYDFPEIVENGGKILSDDLGISKSSFRNKIVRQMQARMLGIGGNPEMPSKFDFK-LQSCNAVSLSWER-ATGRVFPVHSYRIQRRG-----------------------INLFGNTQAIENGGTTANGHGVYYS-AAIGSNSDWKTIYVGNDLEFVDSSLETGHNYMYRIQAWNSVGKSGWEIIDLSKA 371          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A7S3V9U2_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9U2_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.030e-34
Identity = 84/199 (42.21%), Postives = 121/199 (60.80%), Query Frame = 1
Query:  250 REDAALLDRFDVVDADGDGVLEKSEIRELVA-GTGGVSLDSP-GEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQP-ADGNNFPVHKY-VLRRRAG 834
            R  A+    F+ VD DGDG + + E+ + V    GG   D    E+   V RM++ LD N+D  L   DV S+W +L SLLTV EVA+WV+H+VQLP ++ +  R   VTGYDFPEL+ D G  L  ++ I+  +FR +++R M+ ++ G+G  PR  SG+ V    +C ++ L W++  ADG  FPVHKY V+RR  G
Sbjct:  212 RSSASSTSFFNFVDRDGDGKIRRPELIDFVMENIGGSDFDDEVNEVKPEVDRMMKNLDLNNDDGLDTGDVTSYWEKLESLLTVDEVADWVVHAVQLPSYIGDIVRDKHVTGYDFPELVEDNGKALVDELHITEKSFRTKIIRLMQARMLGIGSVPRKPSGI-VATVESCEAIKLTWDRTLADG--FPVHKYRVMRRTVG 407          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A7S1B4T7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4T7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.210e-33
Identity = 94/290 (32.41%), Postives = 137/290 (47.24%), Query Frame = 1
Query:  244 SPREDAALLDRFDVVDADGDGVLEKSEIRELVAGT-GGVSLDSPGEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQPADGNNFPVHKYVLRRRAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLPAGLGLGFGPTAATAEAAWVKVMDGPERSHRDAGLVPGAVYTYSLQAWNALGHS 1110
            S R D      F  VD D D  ++  E+   V    GG   D+P EI + V  M + LD N D+ +S  DV  HW +L  LLT  EVAEWV ++VQLP++VA  FR ++VTG+DF EL+ + G  LE  +GI    FR++L+R ++ ++ G+G  P     +   +  +C S+   W++P     FPVH Y ++RRA                                    + + A + L        ++  W  V  G +    D GL  G  Y Y +QAWNA+G S
Sbjct:   46 SRRSDRTSTSFFSAVDTDHDDTIDLEELSNFVGKVIGGTQFDTPLEIQSEVNAMFKSLDLNHDKRISFKDVKEHWNKLECLLTADEVAEWVKYAVQLPENVANTFRDNAVTGFDFSELVVNNGEALERYLGIEKELFRKKLLRLIKARMLGVGTVPDSVLNIK-HSVDSCSSVSFTWDKPI-ARGFPVHSYRIQRRA--------IMKVPRFIAVDSTGAQNKSVDLDATPNESTVVAQIKL--------SDENWADVFIGADTEFVDTGLELGYSYIYRIQAWNAVGRS 317          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: A0A7S2CAD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAD4_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.050e-33
Identity = 81/210 (38.57%), Postives = 126/210 (60.00%), Query Frame = 1
Query:  205 CAAAVDIATTGTRSPREDAALLDRFDVVDADGDGVLEKSEIRELVAGTGGVSLDSPGE-IDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPR-PASGVAVENTTACGSLLLRWEQPADGNNFPVHKYVLRRR 828
            C A  D+   G  S    A+  + F  +D D DG +E+ EIRE VA  G     +  E I++ V  ++ ++D+N D LLS  ++ ++  R+G++LTVS VAEWV+H +QLP+ V E FR +SVTGYDF EL+ D GA L  D+GI+    R++++R+M+  + G+G  P  P+  +      +C ++ L+W + + G  F VHKY + RR
Sbjct:   17 CLARADVIGDGRSSV---ASTDEFFTTMDTDADGQVEEFEIREAVAAFGSDGGATKVEDIESTVEDIMSRMDSNTDGLLSDEEIETYSKRIGAVLTVSAVAEWVIHGLQLPEEVGELFRSNSVTGYDFAELVEDDGAALGHDIGITRVVHRKKVLRAMKMLMTGVGNVPTTPSPFIPTIVPGSCETMELQWGR-SQGRGFNVHKYRVFRR 222          
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Match: B8C5W8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5W8_THAPS)

HSP 1 Score: 141 bits (356), Expect = 1.530e-30
Identity = 90/290 (31.03%), Postives = 145/290 (50.00%), Query Frame = 1
Query:  244 SPREDAALLDRFDVVDADGDGVLEKSEIRELVAGT-GGVSLDSPGEIDAGVARMLRQLDANDDRLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGYDFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVAVENTTACGSLLLRWEQPADGNNFPVHKYVLRRRAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLPAGLGLGFGPTAATAEAAWVKVMDGPERSHRDAGLVPGAVYTYSLQAWNALGHS 1110
            S R D A    F  +D+D DG+LE  E+   +    GG   D+   +D  V+ ++++LD N D +   SDVL +W +L SLLT  EV+EWV+++VQLP  V + F ++ +TGYDFPE++ +GG +L +++GI  T+FR ++VR M+ ++ G+G  P   +    +    C ++   WE+ +    FPVH Y ++RRA                                      +     +   P  +T++  W  V  G E    D+ +  G  Y Y +QAWN++G S
Sbjct:   73 SIRSDEASDTFFHSLDSDHDGILEPEEVASFLKDQIGGSQFDTQSAVDKEVSTVMKRLDQNHDGI-EMSDVLDYWMQLESLLTAEEVSEWVVYAVQLPKTVGKIFLENGITGYDFPEIVENGGEVLLNELGIDKTSFRNKIVRQMQARMLGIGSIPDKPTQFYYKLDN-CKAVSFTWER-SSARVFPVHSYRIQRRA-----------------------INLFENGSTNENNMPIANDFSMVTYPPVSTSD--WKTVYVGGENEFVDSSVETGHNYIYRIQAWNSVGRS 334          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5838.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KPI6_9PHAE2.910e-6343.59EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S4R769_9STRA6.810e-3731.96Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4V3N0_9STRA1.810e-3630.90Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4R8Z4_9STRA1.180e-3531.97Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2KT34_9STRA3.460e-3534.64Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1VXY7_9STRA1.900e-3431.60Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S3V9U2_9STRA7.030e-3442.21Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S1B4T7_9STRA1.210e-3332.41Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2CAD4_9STRA2.050e-3338.57Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
B8C5W8_THAPS1.530e-3031.03Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5838contigP-wetherbeei_contig5838:60..3133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBP1
PFAMsSAM_1,SAM_2
Model size2947
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.52e-64
EggNOG OGs2CXRS@1|root,2RZA2@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_003260.1
DescriptionFibronectin type 3 domain
Cds size2328
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.604199-UTR-P-wetherbeei_contig5838:59..1881683186864.604199-UTR-P-wetherbeei_contig5838:59..188Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5838 60..188 +
1683186864.6296573-UTR-P-wetherbeei_contig5838:2643..31331683186864.6296573-UTR-P-wetherbeei_contig5838:2643..3133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5838 2644..3133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.6136444-CDS-P-wetherbeei_contig5838:188..3921683186864.6136444-CDS-P-wetherbeei_contig5838:188..392Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5838 189..392 +
1683186864.621828-CDS-P-wetherbeei_contig5838:519..26431683186864.621828-CDS-P-wetherbeei_contig5838:519..2643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5838 520..2643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5838.1.2prot_P-wetherbeei_contig5838.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5838 189..2643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5838.1.2

>prot_P-wetherbeei_contig5838.1.2 ID=prot_P-wetherbeei_contig5838.1.2|Name=mRNA_P-wetherbeei_contig5838.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=776bp
MVWCTASAAVLILNAIGAGWLDVEPCAAAVDIATTGTRSPREDAALLDRF
DVVDADGDGVLEKSEIRELVAGTGGVSLDSPGEIDAGVARMLRQLDANDD
RLLSRSDVLSHWARLGSLLTVSEVAEWVLHSVQLPDHVAERFRQHSVTGY
DFPELIADGGALLESDMGISHTTFRRRLVRSMEWKLWGMGEDPRPASGVA
VENTTACGSLLLRWEQPADGNNFPVHKYVLRRRAGAAAAAAAAAASAATA
GASGAVVAANAASAAPTAAPALLPAGLGLGFGPTAATAEAAWVKVMDGPE
RSHRDAGLVPGAVYTYSLQAWNALGHSETVLFEAITASRNCGGSGDDSGS
WRSSGWNGGRGGGNNGILRAVIGGTTATSAFAAAFVLVLSSAYLRRRRGE
ADGRSGSGKNGGSNSGGSGKSARSAEEAAAALMAETRPAAAAAALGGTTA
SFGPASAGQAGAGGPRVASSLWLDKRRARAAAAGLSPAVAGRSLSPAPGT
RAAAVAPTVATTTGPTAAALAPAAAMLNGLTRLPTPVRSTSNSSRSSLVS
TPRSLDDKGCGTGGGGGSFSWDASPVPPAGTSTGVGMTASRSLTRLADQF
KAARRGSLSSSSESIAATGAAAAAAAGALSAPPPPPLWPAAHSIGSGDNC
GSGNVGGDSGASAGLNSAPWRRGSVEVAAPPDLRRQAVRRLLSQQQRTGS
GEDSPQPSHGACSICLRERKWYRVQHTCSRCHRFFCDKHGVSTHVLPGCP
VGGGCTCSSCLDTARFRVLRPSESI*
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mRNA from alignment at P-wetherbeei_contig5838:60..3133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5838.1.2 ID=mRNA_P-wetherbeei_contig5838.1.2|Name=mRNA_P-wetherbeei_contig5838.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3074bp|location=Sequence derived from alignment at P-wetherbeei_contig5838:60..3133+ (Phaeothamnion wetherbeei SAG_119_79)
AGATCGCCTCGTGATCATATTAAAAGTTTCACTGTTGGTCGCACAAAGAA CAACCGGGTGATGCGTCCCAAACCTCCATCTCCTTTTTGAGTGCTTTGAA AACTGCCACCGAAGTGCCGGAGGGCAACAATGGTTTGGTGCACGGCATCG GCAGCCGTTCTCATCCTCAATGCAATCGGCGCCGGCTGGCTTGATGTGGA GCCATGCGCAGCCGCTGTTGATATAGCTACTACTGGAACACGGAGTCCTC GAGAAGATGCCGCGTTGCTAGACCGTTTTGATGTCGTCGATGCCGACGGC GATGGAGTCCTCGAGAAGAGCGAGATTAGAGAGGTAACGTTGGGGTTTCG AATTGCAAAATTGACGCAATTTTGGTCGAATGCAGTTGTCCGTTTCACTC TGGGCCCCAATGCTTCCGACTCACTCACCTCTTCGACTTCTGCTCTCTGC GCCACTGTAGTTGGTCGCCGGCACGGGCGGCGTGAGCCTCGACTCGCCGG GAGAGATTGATGCCGGCGTGGCGCGTATGCTGCGGCAACTGGACGCGAAT GACGATCGCCTCCTCAGCCGCAGCGACGTCCTCAGCCACTGGGCCCGGCT GGGCTCGCTGCTGACCGTTTCGGAGGTCGCCGAGTGGGTGCTGCACTCCG TGCAGCTGCCGGACCATGTGGCTGAACGGTTCCGGCAGCACTCGGTGACG GGCTACGATTTTCCAGAGCTTATTGCGGACGGCGGCGCCCTTCTTGAATC CGACATGGGCATTTCCCACACCACCTTCCGCCGCCGCCTCGTCCGGAGCA TGGAATGGAAGCTCTGGGGTATGGGGGAGGACCCGCGGCCGGCGTCGGGA GTCGCCGTCGAGAACACGACGGCATGCGGGTCGCTGCTCCTGCGCTGGGA GCAGCCGGCGGACGGCAACAACTTCCCCGTGCACAAGTACGTGCTGCGCC GCCGGGCCGGTGCAGCCGCCGCAGCCGCCGCCGCTGCTGCATCTGCTGCC ACCGCAGGTGCTTCCGGGGCTGTGGTCGCCGCAAACGCTGCTTCCGCCGC CCCCACTGCCGCGCCAGCGCTGCTGCCCGCCGGGCTTGGCCTGGGATTTG GCCCGACGGCCGCGACAGCCGAGGCGGCGTGGGTGAAGGTGATGGACGGG CCGGAACGGTCCCATCGCGACGCCGGCCTGGTGCCGGGCGCCGTTTACAC ATACAGTCTCCAGGCCTGGAACGCGCTCGGTCACAGCGAGACGGTCTTAT TCGAGGCCATCACGGCCTCGAGGAACTGCGGCGGCAGCGGCGACGATAGC GGCAGCTGGCGCAGCAGCGGTTGGAACGGCGGGAGGGGCGGCGGCAACAA CGGCATCCTCCGCGCCGTAATCGGAGGGACTACAGCCACGAGCGCTTTCG CGGCAGCCTTTGTTCTCGTTCTCTCGAGCGCGTACCTGCGGCGGCGGCGG GGAGAAGCCGACGGCCGCAGCGGCAGCGGTAAAAATGGCGGTAGCAATAG TGGCGGCAGCGGTAAGTCTGCGCGAAGTGCCGAAGAAGCAGCGGCAGCGT TAATGGCGGAAACGCGGCCAGCAGCCGCAGCAGCAGCGTTGGGAGGAACA ACGGCCAGTTTCGGACCGGCATCGGCCGGGCAGGCGGGCGCCGGCGGCCC CCGGGTTGCGTCGTCGTTGTGGCTGGATAAGCGGCGCGCGCGGGCCGCCG CAGCAGGGCTTTCTCCGGCAGTTGCGGGGAGGTCACTTTCGCCGGCGCCG GGGACGAGAGCGGCGGCGGTGGCGCCGACTGTAGCAACGACGACAGGGCC GACAGCGGCGGCGCTAGCGCCGGCGGCGGCGATGCTAAACGGCCTGACGC GCCTGCCGACGCCGGTCCGCTCGACGTCCAATTCGTCGCGGTCGTCGCTC GTGTCCACGCCGCGATCCTTGGATGACAAAGGCTGCGGCACTGGCGGCGG TGGCGGCTCGTTTAGTTGGGACGCGAGCCCTGTGCCGCCGGCCGGTACCT CCACTGGCGTGGGCATGACCGCATCGCGGTCGCTGACCCGCCTGGCGGAC CAGTTCAAAGCCGCCCGCCGGGGTTCGCTGTCCTCTTCCTCCGAGAGCAT TGCGGCGACAGGCGCGGCCGCCGCTGCGGCCGCCGGGGCCCTGTCGGCGC CGCCCCCGCCGCCGCTTTGGCCAGCTGCGCACAGCATCGGCAGTGGCGAC AACTGTGGCAGCGGGAACGTCGGCGGCGACTCTGGCGCTTCTGCAGGTTT GAATAGCGCGCCGTGGCGGCGCGGCTCAGTGGAGGTGGCGGCGCCGCCGG ACCTGCGGCGACAGGCCGTGCGGCGGCTGCTGAGCCAGCAGCAGCGCACC GGCTCCGGGGAGGACTCGCCGCAGCCGAGCCATGGCGCCTGCTCCATCTG CCTGCGGGAGCGCAAATGGTACCGGGTGCAGCACACGTGCAGCCGGTGCC ACCGCTTCTTCTGTGACAAGCACGGCGTCTCCACGCACGTCCTGCCAGGC TGTCCCGTCGGCGGCGGCTGCACCTGCAGCAGCTGCCTCGACACCGCCCG CTTCCGGGTCCTTCGGCCGAGCGAGAGCATTTGACATTTTGGCTGTTTTT GGTTGTGCGAGGAAGGAGCTGTACCTGCCGTAACTAATCGCTTCGACAAC AGCTGCCGGCCGGCTCAGGCGCAGCGCGCGCGCAAACCAAACCTCGGCAG GCAAAAGGGAGAGACACACCAGGGAGCTAAATGGGGAGAGAGCAAAGCTA ACGTTGCACGGCGACTGTTTTCAAGCATGCCTTGGATGTGCGCCGGAAAC GGAAGCCGGTAACAGCAGCTCTCTGGCGGCATCTCTGGCGGTGGCAGCTG CAGTGCTCTTGGGCTCCTTCTGAACAGCACGCCGGCGGTGATTGGTTGCC GGCGGCGCAGTAACGCAGCCGCCCCTATACAAAAAGATTGGCGCGACCCC GCGGAGTCCGGCCCGCCCGGGAGCGCCGTGCAGCACGCGCGGCAGAAGGC TGCGGGCGTTGTGAGGGATGCATCGAGATATACAAAGTAGCGTAGCGACA AAACAACATTTAAAACGACGATTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5838:60..3133+

>mRNA_P-wetherbeei_contig5838.1.2 ID=mRNA_P-wetherbeei_contig5838.1.2|Name=mRNA_P-wetherbeei_contig5838.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2328bp|location=Sequence derived from alignment at P-wetherbeei_contig5838:60..3133+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTTGGTGCACGGCATCGGCAGCCGTTCTCATCCTCAATGCAATCGG
CGCCGGCTGGCTTGATGTGGAGCCATGCGCAGCCGCTGTTGATATAGCTA
CTACTGGAACACGGAGTCCTCGAGAAGATGCCGCGTTGCTAGACCGTTTT
GATGTCGTCGATGCCGACGGCGATGGAGTCCTCGAGAAGAGCGAGATTAG
AGAGTTGGTCGCCGGCACGGGCGGCGTGAGCCTCGACTCGCCGGGAGAGA
TTGATGCCGGCGTGGCGCGTATGCTGCGGCAACTGGACGCGAATGACGAT
CGCCTCCTCAGCCGCAGCGACGTCCTCAGCCACTGGGCCCGGCTGGGCTC
GCTGCTGACCGTTTCGGAGGTCGCCGAGTGGGTGCTGCACTCCGTGCAGC
TGCCGGACCATGTGGCTGAACGGTTCCGGCAGCACTCGGTGACGGGCTAC
GATTTTCCAGAGCTTATTGCGGACGGCGGCGCCCTTCTTGAATCCGACAT
GGGCATTTCCCACACCACCTTCCGCCGCCGCCTCGTCCGGAGCATGGAAT
GGAAGCTCTGGGGTATGGGGGAGGACCCGCGGCCGGCGTCGGGAGTCGCC
GTCGAGAACACGACGGCATGCGGGTCGCTGCTCCTGCGCTGGGAGCAGCC
GGCGGACGGCAACAACTTCCCCGTGCACAAGTACGTGCTGCGCCGCCGGG
CCGGTGCAGCCGCCGCAGCCGCCGCCGCTGCTGCATCTGCTGCCACCGCA
GGTGCTTCCGGGGCTGTGGTCGCCGCAAACGCTGCTTCCGCCGCCCCCAC
TGCCGCGCCAGCGCTGCTGCCCGCCGGGCTTGGCCTGGGATTTGGCCCGA
CGGCCGCGACAGCCGAGGCGGCGTGGGTGAAGGTGATGGACGGGCCGGAA
CGGTCCCATCGCGACGCCGGCCTGGTGCCGGGCGCCGTTTACACATACAG
TCTCCAGGCCTGGAACGCGCTCGGTCACAGCGAGACGGTCTTATTCGAGG
CCATCACGGCCTCGAGGAACTGCGGCGGCAGCGGCGACGATAGCGGCAGC
TGGCGCAGCAGCGGTTGGAACGGCGGGAGGGGCGGCGGCAACAACGGCAT
CCTCCGCGCCGTAATCGGAGGGACTACAGCCACGAGCGCTTTCGCGGCAG
CCTTTGTTCTCGTTCTCTCGAGCGCGTACCTGCGGCGGCGGCGGGGAGAA
GCCGACGGCCGCAGCGGCAGCGGTAAAAATGGCGGTAGCAATAGTGGCGG
CAGCGGTAAGTCTGCGCGAAGTGCCGAAGAAGCAGCGGCAGCGTTAATGG
CGGAAACGCGGCCAGCAGCCGCAGCAGCAGCGTTGGGAGGAACAACGGCC
AGTTTCGGACCGGCATCGGCCGGGCAGGCGGGCGCCGGCGGCCCCCGGGT
TGCGTCGTCGTTGTGGCTGGATAAGCGGCGCGCGCGGGCCGCCGCAGCAG
GGCTTTCTCCGGCAGTTGCGGGGAGGTCACTTTCGCCGGCGCCGGGGACG
AGAGCGGCGGCGGTGGCGCCGACTGTAGCAACGACGACAGGGCCGACAGC
GGCGGCGCTAGCGCCGGCGGCGGCGATGCTAAACGGCCTGACGCGCCTGC
CGACGCCGGTCCGCTCGACGTCCAATTCGTCGCGGTCGTCGCTCGTGTCC
ACGCCGCGATCCTTGGATGACAAAGGCTGCGGCACTGGCGGCGGTGGCGG
CTCGTTTAGTTGGGACGCGAGCCCTGTGCCGCCGGCCGGTACCTCCACTG
GCGTGGGCATGACCGCATCGCGGTCGCTGACCCGCCTGGCGGACCAGTTC
AAAGCCGCCCGCCGGGGTTCGCTGTCCTCTTCCTCCGAGAGCATTGCGGC
GACAGGCGCGGCCGCCGCTGCGGCCGCCGGGGCCCTGTCGGCGCCGCCCC
CGCCGCCGCTTTGGCCAGCTGCGCACAGCATCGGCAGTGGCGACAACTGT
GGCAGCGGGAACGTCGGCGGCGACTCTGGCGCTTCTGCAGGTTTGAATAG
CGCGCCGTGGCGGCGCGGCTCAGTGGAGGTGGCGGCGCCGCCGGACCTGC
GGCGACAGGCCGTGCGGCGGCTGCTGAGCCAGCAGCAGCGCACCGGCTCC
GGGGAGGACTCGCCGCAGCCGAGCCATGGCGCCTGCTCCATCTGCCTGCG
GGAGCGCAAATGGTACCGGGTGCAGCACACGTGCAGCCGGTGCCACCGCT
TCTTCTGTGACAAGCACGGCGTCTCCACGCACGTCCTGCCAGGCTGTCCC
GTCGGCGGCGGCTGCACCTGCAGCAGCTGCCTCGACACCGCCCGCTTCCG
GGTCCTTCGGCCGAGCGAGAGCATTTGA
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