mRNA_P-wetherbeei_contig58379.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58379.1.1
Unique NamemRNA_P-wetherbeei_contig58379.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58379.1.1 vs. uniprot
Match: A0A7V8WR88_9CHLR (Macro domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WR88_9CHLR)

HSP 1 Score: 116 bits (290), Expect = 5.700e-30
Identity = 69/130 (53.08%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 PLAAGTALATASGTLAEEGIRTIIHAVVSDALGAPVERADIVRSATGAALELAESLRLRTIAIPSLGGSMASIGLDGASAFPIMIDEVVAYQRRFSSRIERIVFVARDDREARVVRALLREVHSEWAGMR 390
            PLA GTA+AT+SG LAE G+  IIHAVV+DALGAP  R DIVR ATG AL LA+  R R++A+P LG  +    L   +   +MI+E++AY RRF+SR+E IV VAR + EA  +R LL +    W G R
Sbjct:   79 PLAIGTAIATSSGKLAERGVTLIIHAVVADALGAPT-RPDIVRQATGEALRLADRHRARSLALPPLGVGLGPGRLTTEAVAELMIEEILAYLRRFTSRLELIVLVARAEEEAAKLRRLLLDARHYWLGSR 207          
BLAST of mRNA_P-wetherbeei_contig58379.1.1 vs. uniprot
Match: A0A838GI14_9CHLR (Macro domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GI14_9CHLR)

HSP 1 Score: 103 bits (257), Expect = 4.190e-25
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 PLAAGTALATASGTLAEEGIRTIIHAVVSDALGAPVERADIVRSATGAALELAESLRLRTIAIPSLGGSMASIGLDGASAFPIMIDEVVAYQRRFSSRIERIVFVARDDREARVVRALLREVHSEWAGM 387
            PL  G+A++T +G L E G+R IIHAVVSDALGAP  R DIVRSAT AAL  A+ +R++++ +P LG  +    L   +    MI+E VAY RRF+ R++RIV    D R+   +R  L E    W G+
Sbjct:   71 PLTIGSAISTTAGALGERGVRAIIHAVVSDALGAPT-RLDIVRSATAAALREADRVRVKSLLLPPLGSGLGPGRLPVGTVTVAMIEETVAYLRRFTCRLDRIVLPQHDPRDVEDIRRALIEARKLWWGL 198          
BLAST of mRNA_P-wetherbeei_contig58379.1.1 vs. uniprot
Match: A0A6J4UWL8_9CHLR (Macro domain-containing protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UWL8_9CHLR)

HSP 1 Score: 101 bits (251), Expect = 3.320e-24
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 PLAAGTALATASGTLAEEGIRTIIHAVVSDALGAPVERADIVRSATGAALELAESLRLRTIAIPSLGGSMASIGLDGASAFPIMIDEVVAYQRRFSSRIERIVFVARDDREARVVRALLRE 363
            PL  GTA+ T SG+L+  G+R IIHA+VSDALGAP  R DIV  AT +ALE A+  R+R++ IP LG  +    L G +   +M++E++A+ RRF SRI+ IV    D RE+  VR  L E
Sbjct:   71 PLTIGTAIVTTSGSLSGRGVRCIIHAIVSDALGAPT-RKDIVAHATASALEQADRQRVRSVLIPRLGSGLGPGRLPGTTVTEVMLEEIIAHLRRFRSRIDTIVLHQPDRRESEFVREALEE 190          
BLAST of mRNA_P-wetherbeei_contig58379.1.1 vs. uniprot
Match: A0A7W0ABR4_9CHLR (Macro domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0ABR4_9CHLR)

HSP 1 Score: 99.8 bits (247), Expect = 1.320e-23
Identity = 60/130 (46.15%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    1 PLAAGTALATASGTLAEEGIRTIIHAVVSDALGAPVERADIVRSATGAALELAESLRLRTIAIPSLGGSMASIGLDGASAFPIMIDEVVAYQRRFSSRIERIVFVARDDREARVVRALLREVHSEWAGMR 390
            PL  G+A++T  G+L + G+  IIHAVVSDALGAP  R DIVR AT AAL  A+  R+++I +P LG  + +  L        MI+E+VAY RRF+ R++RIV    D REA  +R  L E    W G++
Sbjct:   71 PLTIGSAISTNPGSLVKNGVWCIIHAVVSDALGAPT-RLDIVRHATTAALTEADRRRVKSILLPPLGSGLGTGRLPTGKVAVAMIEEIVAYLRRFTCRLDRIVLAQHDAREAEEIRQALIEARELWWGLK 199          
BLAST of mRNA_P-wetherbeei_contig58379.1.1 vs. uniprot
Match: A0A7V9VB39_9CHLR (Macro domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VB39_9CHLR)

HSP 1 Score: 71.6 bits (174), Expect = 1.000e-12
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 1
Query:    1 PLAAGTALATASGTLAEEGIRTIIHAVVSDALGAPVERADIVRSATGAALELAESLRLRTIAIPSLGGSMASIGLDGASAFPIMIDEVVAYQRRFSSRIERIVFVARDDREARVV 345
            PLA G+   +  G LA  G+  I+HA++ +  GAP     + R+ T A LEL E+ R RT+  P  G  +    L   +   +MI+ +VAY RR SSR+E + FV RDD E   +
Sbjct:   78 PLALGSVAPSEPGLLAGRGVEVIVHAILREMPGAPTTLVTVQRT-TLAMLELCEARRWRTVTFPVFGTGIGHFPLAVDTVGEVMIETIVAYLRRVSSRLEVLTFVTRDDDEREAI 191          
BLAST of mRNA_P-wetherbeei_contig58379.1.1 vs. uniprot
Match: A0A497H638_9ARCH (Macro domain-containing protein n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A497H638_9ARCH)

HSP 1 Score: 50.1 bits (118), Expect = 6.950e-5
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 PLAAGTALATASGTLAEEGIRTIIHAVVSD--ALGAPVERADIVRSATGAALELAESLRLRTIAIPSLGGSMASIGLDGASAFPIMIDEVVAYQRRFSSRIERIVFVARDD 327
            P+A G A+AT +G+L     + +IHA   +  A+   VE    VR AT AAL++AE L L+ +AIP +G  +  +  D A+    M D + +++ RF    E+I+FV R++
Sbjct:   53 PIAVGDAVATTAGSLP---CQYVIHAPTMERPAMKINVEN---VRKATEAALQVAERLGLKCVAIPGMGTGVGGVSPDDAA--DAMADVIKSFEERF----EKIIFVDRNE 151          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58379.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7V8WR88_9CHLR5.700e-3053.08Macro domain-containing protein n=1 Tax=Chloroflex... [more]
A0A838GI14_9CHLR4.190e-2546.51Macro domain-containing protein n=1 Tax=Chloroflex... [more]
A0A6J4UWL8_9CHLR3.320e-2448.76Macro domain-containing protein n=1 Tax=uncultured... [more]
A0A7W0ABR4_9CHLR1.320e-2346.15Macro domain-containing protein n=1 Tax=Chloroflex... [more]
A0A7V9VB39_9CHLR1.000e-1238.26Macro domain-containing protein n=1 Tax=Chloroflex... [more]
A0A497H638_9ARCH6.950e-536.04Macro domain-containing protein n=1 Tax=Thermoplas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58379contigP-wetherbeei_contig58379:7..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog479434.Sthe_2246
PFAMsMacro
Model size396
Max annot lvl189775|Thermomicrobia
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.36e-06
EggNOG OGsCOG2110@1|root,COG2110@2|Bacteria,2G7ID@200795|Chloroflexi,27YKP@189775|Thermomicrobia
DescriptionMacro domain
Cds size396
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.5771337-CDS-P-wetherbeei_contig58379:6..4021683186864.5771337-CDS-P-wetherbeei_contig58379:6..402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58379 7..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58379.1.1prot_P-wetherbeei_contig58379.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58379 7..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58379.1.1

>prot_P-wetherbeei_contig58379.1.1 ID=prot_P-wetherbeei_contig58379.1.1|Name=mRNA_P-wetherbeei_contig58379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
PLAAGTALATASGTLAEEGIRTIIHAVVSDALGAPVERADIVRSATGAAL
ELAESLRLRTIAIPSLGGSMASIGLDGASAFPIMIDEVVAYQRRFSSRIE
RIVFVARDDREARVVRALLREVHSEWAGMRR*
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mRNA from alignment at P-wetherbeei_contig58379:7..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58379.1.1 ID=mRNA_P-wetherbeei_contig58379.1.1|Name=mRNA_P-wetherbeei_contig58379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig58379:7..402+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTCGCGGCGGGAACCGCCCTCGCCACCGCGTCCGGAACGCTGGCCGA GGAGGGCATCCGCACGATCATCCACGCGGTGGTCTCCGATGCGCTGGGCG CCCCGGTCGAACGGGCGGACATCGTGCGGAGCGCCACCGGGGCGGCGCTC GAGCTGGCGGAGTCCCTGCGGCTCCGCACCATCGCCATCCCCTCCCTGGG CGGGAGCATGGCCTCGATCGGCCTCGACGGGGCCAGCGCCTTTCCGATCA TGATCGATGAGGTGGTCGCCTATCAGCGCCGCTTCAGCTCACGCATCGAA CGCATCGTCTTCGTCGCACGCGATGACCGCGAGGCGCGGGTCGTGCGCGC CCTTCTCCGCGAGGTTCACAGCGAATGGGCCGGCATGCGCCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58379:7..402+

>mRNA_P-wetherbeei_contig58379.1.1 ID=mRNA_P-wetherbeei_contig58379.1.1|Name=mRNA_P-wetherbeei_contig58379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig58379:7..402+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTCGCGGCGGGAACCGCCCTCGCCACCGCGTCCGGAACGCTGGCCGA
GGAGGGCATCCGCACGATCATCCACGCGGTGGTCTCCGATGCGCTGGGCG
CCCCGGTCGAACGGGCGGACATCGTGCGGAGCGCCACCGGGGCGGCGCTC
GAGCTGGCGGAGTCCCTGCGGCTCCGCACCATCGCCATCCCCTCCCTGGG
CGGGAGCATGGCCTCGATCGGCCTCGACGGGGCCAGCGCCTTTCCGATCA
TGATCGATGAGGTGGTCGCCTATCAGCGCCGCTTCAGCTCACGCATCGAA
CGCATCGTCTTCGTCGCACGCGATGACCGCGAGGCGCGGGTCGTGCGCGC
CCTTCTCCGCGAGGTTCACAGCGAATGGGCCGGCATGCGCCGTTGA
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