mRNA_P-wetherbeei_contig58292.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58292.1.1
Unique NamemRNA_P-wetherbeei_contig58292.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: UPI001989FD49 (Glutamine synthetase n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI001989FD49)

HSP 1 Score: 316 bits (809), Expect = 6.650e-107
Identity = 151/167 (90.42%), Postives = 159/167 (95.21%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSL 501
            EPGMLFFLAEF +EAKAPCPRGVLRRV+ KA KMGFEV+AGFEYEYF+FDETPDSVRAKHYRDLKPMAPG+FGYSVIRNTVHS YY ETL+LCE+MRFPLEALHEETGPGVLEAAIAVDEGL+AADKAGLFKTFIKVHAQ  GRMATFMAKWNP LPGQSGHIHVSL
Sbjct:   99 EPGMLFFLAEFTEEAKAPCPRGVLRRVLDKAHKMGFEVYAGFEYEYFIFDETPDSVRAKHYRDLKPMAPGYFGYSVIRNTVHSGYYNETLELCEQMRFPLEALHEETGPGVLEAAIAVDEGLSAADKAGLFKTFIKVHAQLNGRMATFMAKWNPNLPGQSGHIHVSL 265          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: A0A4R3JFH3_9PROT (L-glutamine synthetase n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3JFH3_9PROT)

HSP 1 Score: 240 bits (612), Expect = 6.260e-75
Identity = 116/167 (69.46%), Postives = 136/167 (81.44%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSL 501
            E  ML FL EF+  A+  CPRG L+R++A A +MG+ V+AG EYE+FVFDETPDSVR K++R+LKP+AP +FGYSV+RNTVHSD Y + L  CE M   LE LHEETGPGVLEAAIAVD+ LAAADKA LFKTFIKV AQ+RG MATFMAKW+P  PGQSGHIH+SL
Sbjct:   99 EDNMLLFLGEFSGAAEEICPRGTLKRILALADEMGYRVNAGVEYEFFVFDETPDSVREKNFRNLKPIAPDYFGYSVVRNTVHSDLYRDILSGCEAMDMGLEGLHEETGPGVLEAAIAVDDALAAADKAALFKTFIKVMAQKRGLMATFMAKWSPDWPGQSGHIHISL 265          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: K2JM00_9PROT (Glutamine synthetase n=3 Tax=Oceanibaculum TaxID=659693 RepID=K2JM00_9PROT)

HSP 1 Score: 239 bits (609), Expect = 1.720e-74
Identity = 113/167 (67.66%), Postives = 133/167 (79.64%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSL 501
            E  MLFFL EFAD+A+  CPRG LRRV+ KA  MGF+  A FEYE+F+FDETPDS+R K Y  LKP+ PG FGYSV+R+TVH+D+Y   L+L E+M FP+E LH ETGPGVLEAAI VD+ LAAADKA LFK+F KV AQR G MATFMAKW+P  PGQSGH+H+SL
Sbjct:   99 EDNMLFFLGEFADKAETVCPRGTLRRVLDKAESMGFKARAAFEYEFFLFDETPDSIREKGYYGLKPITPGMFGYSVLRSTVHADFYHALLELSERMDFPIEGLHTETGPGVLEAAITVDDALAAADKAALFKSFTKVLAQRNGMMATFMAKWSPDYPGQSGHLHLSL 265          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: A0A7X1L6N8_9DELT (Glutamine synthetase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7X1L6N8_9DELT)

HSP 1 Score: 239 bits (609), Expect = 1.720e-74
Identity = 115/168 (68.45%), Postives = 132/168 (78.57%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSLR 504
            E  MLFFL EFA+ A+A CPRGVLRRV+ +A KMG    AGFEYE+FVF+E   S+R K YRDLKPMAPG+FGYSV+RN+VH ++Y   LD CE M F LE LHEETGPGVLE AI VD  LAAADKA LFKTF K+ AQR G +ATFMAKW+P  PGQSGHIH+SL+
Sbjct:   99 EDNMLFFLGEFAEAAEAICPRGVLRRVLERAGKMGISALAGFEYEFFVFEENAHSIREKRYRDLKPMAPGYFGYSVLRNSVHQEFYRALLDTCEAMDFSLEGLHEETGPGVLEGAITVDTALAAADKAALFKTFTKILAQRCGFLATFMAKWSPDWPGQSGHIHISLK 266          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: A0A6P1TD21_9GAMM (Glutamine synthetase n=1 Tax=Microbulbifer hydrolyticus TaxID=48074 RepID=A0A6P1TD21_9GAMM)

HSP 1 Score: 238 bits (607), Expect = 7.220e-74
Identity = 118/168 (70.24%), Postives = 131/168 (77.98%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSLR 504
            E GML FLAEFA  A+A CPR +LRRVI +  K GF   A  EYE+F+FDETPDS RAK YRDLKP  PG+FGYSVIRN+VH+D Y E L L E+M FP+E LH ETGPGVLEAAI VD   AAADKA LFKTFIKV A+RRG MATFMAKW+   PGQSGHIH+SLR
Sbjct:  127 EDGMLLFLAEFAGAAEAVCPRALLRRVIERCEKAGFAPFAALEYEFFLFDETPDSARAKGYRDLKPFTPGWFGYSVIRNSVHADLYHEILALAERMDFPIEGLHTETGPGVLEAAITVDNAAAAADKAALFKTFIKVLAERRGLMATFMAKWSNEYPGQSGHIHLSLR 294          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: A0A2A4LBS6_9HYPH (Glutamine synthetase (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4LBS6_9HYPH)

HSP 1 Score: 230 bits (587), Expect = 9.420e-74
Identity = 111/168 (66.07%), Postives = 132/168 (78.57%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSLR 504
            E GML F+ EF  E +A CPRG LRR++ KA +MG++V AG EYE+F+F+ETPD+VR K+Y++LKP+ PGFFGYS+IRNTV SD Y + LD C KM   LEALHEETGPG +EAAI VD  L AADKA LFKTF KV AQ+ G MATFMAKW+   PGQSGHIH+SLR
Sbjct:   13 EDGMLLFICEFVGEHEAVCPRGTLRRILEKADRMGYQVLAGVEYEFFLFEETPDTVREKNYKNLKPIQPGFFGYSMIRNTVDSDLYQDLLDGCLKMDMALEALHEETGPGCIEAAIQVDSALHAADKAALFKTFTKVMAQKNGLMATFMAKWSNDFPGQSGHIHISLR 180          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: A0A3L8B770_9GAMM (Glutamine synthetase n=7 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3L8B770_9GAMM)

HSP 1 Score: 236 bits (601), Expect = 2.870e-73
Identity = 115/167 (68.86%), Postives = 133/167 (79.64%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSL 501
            EPGMLFFLAEF   A A CPRG+L+R++  A  MGFE  A FEYE+F+F+ETP SVRAK Y++L P+ PGFFGYSV+RN+VH++ Y E L LCE+M FPLE LH ETGPGVLEAAI VDE +AAADKA LFKTF KV AQR   MATFMAKW+   PGQSGHIH+SL
Sbjct:  101 EPGMLFFLAEFESAAAAICPRGLLKRILDMAGAMGFEAKAAFEYEFFLFNETPHSVRAKGYQNLVPITPGFFGYSVLRNSVHAELYQELLALCEQMDFPLEGLHTETGPGVLEAAITVDEAMAAADKALLFKTFTKVWAQRHDMMATFMAKWSNDYPGQSGHIHISL 267          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: A0A352GNE6_9PROT (Glutamine synthetase (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A352GNE6_9PROT)

HSP 1 Score: 229 bits (585), Expect = 4.440e-73
Identity = 113/167 (67.66%), Postives = 133/167 (79.64%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSL 501
            E  MLFFL EF  + +  CPR VLRR +AKA KMGF+V AG EYE+F+F+ETP++VR K+YRDLKP+ PGFFGYS++R+TV SD Y + LD C KM   LE LHEETGPGVLEAAI VD  LAAADKA LFKTF K+ AQ+RG MATFMA+W+P  PGQSGHIH+SL
Sbjct:   99 EDDMLFFLGEFDGKYEDVCPRAVLRRTLAKADKMGFKVLAGLEYEFFMFEETPETVREKNYRDLKPIQPGFFGYSMLRSTVDSDLYRDILDGCVKMDMALEGLHEETGPGVLEAAIQVDGALAAADKAVLFKTFAKIMAQKRGLMATFMARWSPDWPGQSGHIHMSL 265          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: UPI001054FFC7 (glutamine synthetase n=1 Tax=Legionella sp. W10-070 TaxID=1117709 RepID=UPI001054FFC7)

HSP 1 Score: 234 bits (598), Expect = 7.890e-73
Identity = 113/168 (67.26%), Postives = 134/168 (79.76%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSLR 504
            E   L F+AEFA  A+A CPR +LRR+I KA  MGFE +A  EYE+F+FDETPDSVRAK +R+LKP+ P FFGYS+IRNTVH+D Y + L++ E M FP+E LH ETGPGVLEAAIAVD+  AAADKA LFKTF+K+ AQR   MATFMAKW+P  PGQSGHIH+SLR
Sbjct:  100 EDNQLLFMAEFAGAAEALCPRALLRRMIEKAALMGFEAYAALEYEFFLFDETPDSVRAKGFRNLKPITPDFFGYSIIRNTVHADLYHQILNMAEAMDFPIEGLHAETGPGVLEAAIAVDKAEAAADKAALFKTFMKILAQRNNTMATFMAKWSPHYPGQSGHIHLSLR 267          
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Match: UPI00124E60C0 (glutamine synthetase n=1 Tax=Nitrincola alkalilacustris TaxID=1571224 RepID=UPI00124E60C0)

HSP 1 Score: 234 bits (598), Expect = 8.100e-73
Identity = 111/168 (66.07%), Postives = 134/168 (79.76%), Query Frame = 1
Query:    1 EPGMLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETPDSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEALHEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWNPALPGQSGHIHVSLR 504
            E G L FLAE +D+A+  CPRG LRRV+ KA +MGF+ +A  EYE+F+FDETPDS+R K YR+LKP  PGFFGYSVIRN+VH++ Y + +++ E M FP+E LH ETGPGVLEAA+AVD   AAADKA LFKTF+KV AQR   MATFMAKW+P  PGQSGHIH+SLR
Sbjct:  100 EEGQLLFLAELSDQAEKICPRGTLRRVLEKASQMGFDAYAALEYEFFMFDETPDSIREKGYRNLKPFTPGFFGYSVIRNSVHAELYHQIMEMAEVMDFPIEGLHTETGPGVLEAALAVDAAEAAADKAALFKTFMKVLAQRNDLMATFMAKWSPNYPGQSGHIHLSLR 267          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001989FD496.650e-10790.42Glutamine synthetase n=1 Tax=Prolixibacteraceae ba... [more]
A0A4R3JFH3_9PROT6.260e-7569.46L-glutamine synthetase n=1 Tax=Varunaivibrio sulfu... [more]
K2JM00_9PROT1.720e-7467.66Glutamine synthetase n=3 Tax=Oceanibaculum TaxID=6... [more]
A0A7X1L6N8_9DELT1.720e-7468.45Glutamine synthetase n=1 Tax=Desulfobacteraceae ba... [more]
A0A6P1TD21_9GAMM7.220e-7470.24Glutamine synthetase n=1 Tax=Microbulbifer hydroly... [more]
A0A2A4LBS6_9HYPH9.420e-7466.07Glutamine synthetase (Fragment) n=1 Tax=Hyphomicro... [more]
A0A3L8B770_9GAMM2.870e-7368.86Glutamine synthetase n=7 Tax=Gammaproteobacteria T... [more]
A0A352GNE6_9PROT4.440e-7367.66Glutamine synthetase (Fragment) n=1 Tax=Rhodospiri... [more]
UPI001054FFC77.890e-7367.26glutamine synthetase n=1 Tax=Legionella sp. W10-07... [more]
UPI00124E60C08.100e-7366.07glutamine synthetase n=1 Tax=Nitrincola alkalilacu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58292contigP-wetherbeei_contig58292:1..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207063.P24_08399
PFAMsGln-synt_C
Model size504
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00010,RC02798
KEGG koko:K01915
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.98e-75
EggNOG OGsCOG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TU6U@28211|Alphaproteobacteria,2JPVH@204441|Rhodospirillales
EC6.3.1.2
DescriptionGlutamine synthetase, catalytic domain
Cds size495
COG categoryE
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.4203963-CDS-P-wetherbeei_contig58292:0..4951683186863.4203963-CDS-P-wetherbeei_contig58292:0..495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58292 1..495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.429805-UTR-P-wetherbeei_contig58292:495..5041683186863.429805-UTR-P-wetherbeei_contig58292:495..504Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58292 496..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58292.1.1prot_P-wetherbeei_contig58292.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58292 1..495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58292.1.1

>prot_P-wetherbeei_contig58292.1.1 ID=prot_P-wetherbeei_contig58292.1.1|Name=mRNA_P-wetherbeei_contig58292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MLFFLAEFADEAKAPCPRGVLRRVIAKARKMGFEVHAGFEYEYFVFDETP
DSVRAKHYRDLKPMAPGFFGYSVIRNTVHSDYYLETLDLCEKMRFPLEAL
HEETGPGVLEAAIAVDEGLAAADKAGLFKTFIKVHAQRRGRMATFMAKWN
PALPGQSGHIHVSLR
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mRNA from alignment at P-wetherbeei_contig58292:1..504-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58292.1.1 ID=mRNA_P-wetherbeei_contig58292.1.1|Name=mRNA_P-wetherbeei_contig58292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58292:1..504- (Phaeothamnion wetherbeei SAG_119_79)
GAACCGGGCATGCTGTTCTTCCTCGCCGAATTCGCCGACGAGGCCAAGGC ACCCTGCCCGCGCGGCGTACTCAGACGCGTGATCGCCAAGGCGCGCAAGA TGGGCTTCGAGGTTCACGCCGGTTTCGAATACGAATACTTCGTGTTCGAC GAAACGCCGGATTCCGTACGCGCCAAGCACTACCGCGACCTCAAGCCCAT GGCGCCTGGATTCTTCGGCTACTCGGTCATTCGCAACACGGTGCACTCGG ACTACTACCTCGAGACGCTCGACCTGTGCGAAAAAATGCGCTTCCCCCTC GAGGCCTTGCACGAGGAAACCGGTCCCGGCGTGCTCGAAGCCGCGATCGC GGTCGACGAGGGCCTCGCCGCCGCCGACAAGGCGGGACTATTCAAGACCT TCATCAAAGTGCACGCGCAGCGTCGCGGCCGCATGGCCACGTTCATGGCC AAGTGGAATCCGGCGCTGCCGGGCCAGAGCGGTCATATTCACGTTTCGCT CAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58292:1..504-

>mRNA_P-wetherbeei_contig58292.1.1 ID=mRNA_P-wetherbeei_contig58292.1.1|Name=mRNA_P-wetherbeei_contig58292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig58292:1..504- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTTCTTCCTCGCCGAATTCGCCGACGAGGCCAAGGCACCCTGCCC
GCGCGGCGTACTCAGACGCGTGATCGCCAAGGCGCGCAAGATGGGCTTCG
AGGTTCACGCCGGTTTCGAATACGAATACTTCGTGTTCGACGAAACGCCG
GATTCCGTACGCGCCAAGCACTACCGCGACCTCAAGCCCATGGCGCCTGG
ATTCTTCGGCTACTCGGTCATTCGCAACACGGTGCACTCGGACTACTACC
TCGAGACGCTCGACCTGTGCGAAAAAATGCGCTTCCCCCTCGAGGCCTTG
CACGAGGAAACCGGTCCCGGCGTGCTCGAAGCCGCGATCGCGGTCGACGA
GGGCCTCGCCGCCGCCGACAAGGCGGGACTATTCAAGACCTTCATCAAAG
TGCACGCGCAGCGTCGCGGCCGCATGGCCACGTTCATGGCCAAGTGGAAT
CCGGCGCTGCCGGGCCAGAGCGGTCATATTCACGTTTCGCTCAGG
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