mRNA_P-wetherbeei_contig5821.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5821.1.1
Unique NamemRNA_P-wetherbeei_contig5821.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5821contigP-wetherbeei_contig5821:28..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LF75
PFAMsPkinase,Pkinase_Tyr,Usp,zf-C3HC4_3
Model size240
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000464
EggNOG OGsCOG0515@1|root,2S11J@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_003760.1
DescriptionUniversal stress protein family
Cds size240
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.4863427-CDS-P-wetherbeei_contig5821:27..1501683186862.4863427-CDS-P-wetherbeei_contig5821:27..150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5821 28..150 -
1683186862.4961426-CDS-P-wetherbeei_contig5821:281..3981683186862.4961426-CDS-P-wetherbeei_contig5821:281..398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5821 282..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5821.1.1prot_P-wetherbeei_contig5821.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5821 28..398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5821.1.1

>prot_P-wetherbeei_contig5821.1.1 ID=prot_P-wetherbeei_contig5821.1.1|Name=mRNA_P-wetherbeei_contig5821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MANLDIHRAAEKGLLDDVKRFIAAGGDVNLRGLLSLTPLHAAAAGGQTEA
LGMLLAAGAAVDSRDRRGNTPLHRAVYFGQ
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mRNA from alignment at P-wetherbeei_contig5821:28..398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5821.1.1 ID=mRNA_P-wetherbeei_contig5821.1.1|Name=mRNA_P-wetherbeei_contig5821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=371bp|location=Sequence derived from alignment at P-wetherbeei_contig5821:28..398- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAACCTCGACATCCATCGCGCGGCAGAGAAGGGCCTTCTCGACGA
TGTGAAGCGCTTTATCGCTGCCGGAGGCGACGTTAACCTGCGAGGCCTAC
TTTCTCTCACGCCGCTGGTAAGTCCCACACCTCTTTTGCTGTGATTAGAT
CAGTACACGGCGAAACTCTGACATGCGCGTTTCCCTGGTGGTTTCGTAGG
ATGAATTAGTACATTTCACTCCCTCTTTTTGCCGTTTCCGATCGGCAGCA
CGCCGCAGCGGCGGGTGGCCAGACCGAAGCTCTCGGAATGCTGCTGGCCG
CTGGCGCAGCTGTTGACAGCCGCGATCGCCGTGGTAACACACCGCTGCAT
CGAGCGGTTTACTTTGGACAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5821:28..398-

>mRNA_P-wetherbeei_contig5821.1.1 ID=mRNA_P-wetherbeei_contig5821.1.1|Name=mRNA_P-wetherbeei_contig5821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig5821:28..398- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAACCTCGACATCCATCGCGCGGCAGAGAAGGGCCTTCTCGACGA
TGTGAAGCGCTTTATCGCTGCCGGAGGCGACGTTAACCTGCGAGGCCTAC
TTTCTCTCACGCCGCTGCACGCCGCAGCGGCGGGTGGCCAGACCGAAGCT
CTCGGAATGCTGCTGGCCGCTGGCGCAGCTGTTGACAGCCGCGATCGCCG
TGGTAACACACCGCTGCATCGAGCGGTTTACTTTGGACAG
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